Lsi02G012220 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGTCCTTGTCCTTCCTACAGACTGTATATAAAGGATCACCCATAGGCCTACAAAACCTCAACATTCTTAACTCCATCATTATTTCCCAGGGAAAATTATTTAACTAACCGCCCCTCCGGCAGCCTGTGATCGGAATTACGAAACTGGCAAACTCAGAGTGGTCGTCGGAGCAGAGGGAGAGCGTTCGGAGAGTGAGGGCCCTTTACAAGGCGTTGGGTTCCAAAGACGTGGAGACGGTGCACCGCCTTCTGGCGCCGGACCTGGAGTGGTGGTTCCATGGTCCACCGTCGCACCAATACTTGATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTCTTCGCCCCAATCTCCGTCGTCCCATTTGGGCCCACTGTCGTGCTGGCGGAAGGCTACGACACAAAACGCGCCGTTTCGTGGGTCCACGCCTGGACCATTACTGATGGGATAATCACTCACGTGAAGGAATATCTCAACACCTCTGTTACCGTCAAGCGCTTCGCCTCCGCCGCGGACGGGGATTCGCCGTCCGCATCGCTGCCGCCTAACTGCCAGAGTGTGTGGCAGAGCAAGGTGTGGGGAGAATCGGTGGTGCCTGCTCTTGTTTTGGCTCTTTAG ATGCAGTCCTTGTCCTTCCTACAGACTCCTGTGATCGGAATTACGAAACTGGCAAACTCAGAGTGGTCGTCGGAGCAGAGGGAGAGCGTTCGGAGAGTGAGGGCCCTTTACAAGGCGTTGGGTTCCAAAGACGTGGAGACGGTGCACCGCCTTCTGGCGCCGGACCTGGAGTGGTGGTTCCATGGTCCACCGTCGCACCAATACTTGATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTCTTCGCCCCAATCTCCGTCGTCCCATTTGGGCCCACTGTCGTGCTGGCGGAAGGCTACGACACAAAACGCGCCGTTTCGTGGGTCCACGCCTGGACCATTACTGATGGGATAATCACTCACGTGAAGGAATATCTCAACACCTCTGTTACCGTCAAGCGCTTCGCCTCCGCCGCGGACGGGGATTCGCCGTCCGCATCGCTGCCGCCTAACTGCCAGAGTGTGTGGCAGAGCAAGGTGTGGGGAGAATCGGTGGTGCCTGCTCTTGTTTTGGCTCTTTAG ATGCAGTCCTTGTCCTTCCTACAGACTCCTGTGATCGGAATTACGAAACTGGCAAACTCAGAGTGGTCGTCGGAGCAGAGGGAGAGCGTTCGGAGAGTGAGGGCCCTTTACAAGGCGTTGGGTTCCAAAGACGTGGAGACGGTGCACCGCCTTCTGGCGCCGGACCTGGAGTGGTGGTTCCATGGTCCACCGTCGCACCAATACTTGATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTCTTCGCCCCAATCTCCGTCGTCCCATTTGGGCCCACTGTCGTGCTGGCGGAAGGCTACGACACAAAACGCGCCGTTTCGTGGGTCCACGCCTGGACCATTACTGATGGGATAATCACTCACGTGAAGGAATATCTCAACACCTCTGTTACCGTCAAGCGCTTCGCCTCCGCCGCGGACGGGGATTCGCCGTCCGCATCGCTGCCGCCTAACTGCCAGAGTGTGTGGCAGAGCAAGGTGTGGGGAGAATCGGTGGTGCCTGCTCTTGTTTTGGCTCTTTAG MQSLSFLQTPVIGITKLANSEWSSEQRESVRRVRALYKALGSKDVETVHRLLAPDLEWWFHGPPSHQYLMRLLTGASSSFVFAPISVVPFGPTVVLAEGYDTKRAVSWVHAWTITDGIITHVKEYLNTSVTVKRFASAADGDSPSASLPPNCQSVWQSKVWGESVVPALVLAL Homology
BLAST of Lsi02G012220 vs. ExPASy Swiss-Prot
Match: Q94AK6 (Senescence associated gene 20 OS=Arabidopsis thaliana OX=3702 GN=SAG20 PE=2 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21 Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy Swiss-Prot
Match: P20144 (Wound-induced protein 1 OS=Solanum tuberosum OX=4113 GN=WUN1 PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16 Identity = 54/112 (48.21%), Postives = 74/112 (66.07%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy TrEMBL
Match: A0A5A7UY51 (Putative Senescence associated protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00340 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 7.5e-76 Identity = 144/172 (83.72%), Postives = 157/172 (91.28%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy TrEMBL
Match: A0A061GYQ0 (Senescence associated gene 20, putative OS=Theobroma cacao OX=3641 GN=TCM_042245 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45 Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy TrEMBL
Match: A0A1U7ZU64 (uncharacterized protein LOC104597350 OS=Nelumbo nucifera OX=4432 GN=LOC104597350 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44 Identity = 100/165 (60.61%), Postives = 120/165 (72.73%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy TrEMBL
Match: A0A2N9EI45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2202 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 7.6e-44 Identity = 103/172 (59.88%), Postives = 122/172 (70.93%), Query Frame = 0
BLAST of Lsi02G012220 vs. ExPASy TrEMBL
Match: A0A6A1WK91 (Wound-induced protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR1G008920 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 4.9e-43 Identity = 104/169 (61.54%), Postives = 118/169 (69.82%), Query Frame = 0
BLAST of Lsi02G012220 vs. NCBI nr
Match: KAA0059984.1 (putative Senescence associated protein 20 [Cucumis melo var. makuwa] >TYJ97243.1 putative Senescence associated protein 20 [Cucumis melo var. makuwa]) HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75 Identity = 144/172 (83.72%), Postives = 157/172 (91.28%), Query Frame = 0
BLAST of Lsi02G012220 vs. NCBI nr
Match: KAG7037026.1 (Senescence associated protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 255.0 bits (650), Expect = 4.7e-64 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 0
BLAST of Lsi02G012220 vs. NCBI nr
Match: KAG6607351.1 (Senescence associated protein 20, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 255.0 bits (650), Expect = 4.7e-64 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 0
BLAST of Lsi02G012220 vs. NCBI nr
Match: XP_038893485.1 (senescence associated gene 20-like [Benincasa hispida]) HSP 1 Score: 193.4 bits (490), Expect = 1.7e-45 Identity = 96/106 (90.57%), Postives = 100/106 (94.34%), Query Frame = 0
BLAST of Lsi02G012220 vs. NCBI nr
Match: XP_017982445.1 (PREDICTED: uncharacterized protein LOC18591051 [Theobroma cacao]) HSP 1 Score: 191.8 bits (486), Expect = 4.9e-45 Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = 0
BLAST of Lsi02G012220 vs. TAIR 10
Match: AT3G10985.1 (senescence associated gene 20 ) HSP 1 Score: 102.1 bits (253), Expect = 4.7e-22 Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 0
BLAST of Lsi02G012220 vs. TAIR 10
Match: AT5G01740.1 (Nuclear transport factor 2 (NTF2) family protein ) HSP 1 Score: 101.7 bits (252), Expect = 6.2e-22 Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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