Lsi02G003550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi02G003550
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor PAR1-like
Locationchr02: 3037762 .. 3038013 (+)
RNA-Seq ExpressionLsi02G003550
SyntenyLsi02G003550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAGCAGATGTGATGGCTAATTCCAGCTCCTCGTCTCATCATAATGTGGCTGATTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTCCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACGAGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

mRNA sequence

ATGGCTTTAGCAGATGTGATGGCTAATTCCAGCTCCTCGTCTCATCATAATGTGGCTGATTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTCCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACGAGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

Coding sequence (CDS)

ATGGCTTTAGCAGATGTGATGGCTAATTCCAGCTCCTCGTCTCATCATAATGTGGCTGATTCAAGCTTGAAGAGGAAGAGGAGAGAAGCACGAGAGGTTCGCCGGAAAGTTCAGAAGCTCCGGTGGGTGGTGCCCGGTGGTCGAGGGTTGCGACGAGAACATCTCTTCGCCAAAACAGCTCATTATATATTGCATTTGAGATTGAAAGTTTGTGCTCTTGAAACTGTTCTCAAATTGCAGGAAGAGGCTTGA

Protein sequence

MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQEEA
Homology
BLAST of Lsi02G003550 vs. ExPASy TrEMBL
Match: A0A5A7UGX9 (Transcription factor PAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003490 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTA 60
          MALAD+MANSS   HHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLRREHLFA+TA
Sbjct: 1  MALADLMANSSPPCHHNVAPSSSKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFARTA 60

Query: 61 HYILHLRLKVCALETVLKLQ 81
          +YILHL+LKVCALE+VLKLQ
Sbjct: 61 YYILHLKLKVCALESVLKLQ 80

BLAST of Lsi02G003550 vs. ExPASy TrEMBL
Match: A0A5N6RR97 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019086 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 25 RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE 82
          R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Sbjct: 28 RGKRRQRAVQMKVQKLQRIVPGGDGLQPDNLFAQTANYILHLRLQVYALESVLRLNQ 84

BLAST of Lsi02G003550 vs. ExPASy TrEMBL
Match: A0A0A0LQU9 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045930 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 1  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLR 42
          MALAD+MANSSSS HH+V  SSLKRKRREAREVRRKVQKLR
Sbjct: 1  MALADLMANSSSSCHHSVTASSLKRKRREAREVRRKVQKLR 41

BLAST of Lsi02G003550 vs. ExPASy TrEMBL
Match: A0A438EHL0 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070132 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 21 SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL 80
          S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Sbjct: 10 SGEKLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQVNVLQALSKI 68

BLAST of Lsi02G003550 vs. ExPASy TrEMBL
Match: A0A438JND2 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_016970 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 21 SSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKL 80
          S  K +RR  R VRRKV+KL+ ++PGGRGL+ + LF +TA YILHLRL+V  L+ + K+
Sbjct: 10 SGEKLRRRRRRSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQVNVLQALSKI 68

BLAST of Lsi02G003550 vs. NCBI nr
Match: KAA0055213.1 (transcription factor PAR1-like [Cucumis melo var. makuwa] >TYJ99143.1 transcription factor PAR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 7.6e-28
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0

Query: 1  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTA 60
          MALAD+MANSS   HHNVA SS KRKRREAREVRRKVQKLRWVVPGGRGLRREHLFA+TA
Sbjct: 1  MALADLMANSSPPCHHNVAPSSSKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFARTA 60

Query: 61 HYILHLRLKVCALETVLKLQ 81
          +YILHL+LKVCALE+VLKLQ
Sbjct: 61 YYILHLKLKVCALESVLKLQ 80

BLAST of Lsi02G003550 vs. NCBI nr
Match: KAG7019830.1 (hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-22
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 12  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVC 71
           SS H NV   +LKRKRREAR+VRRKVQKLRWVVPGGRGL++EHLFAKTAHYILHLRLKVC
Sbjct: 76  SSCHLNV--PALKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVC 135

Query: 72  ALETVLKLQEEA 84
           AL+T+LKLQ+EA
Sbjct: 136 ALQTILKLQDEA 145

BLAST of Lsi02G003550 vs. NCBI nr
Match: KAG6584233.1 (hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-22
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 0

Query: 12  SSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVC 71
           SS H NV   +LKRKRREAR+VRRKVQKLRWVVPGGRGL++EHLFAKTAHYILHLRLKVC
Sbjct: 81  SSCHLNV--PALKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVC 140

Query: 72  ALETVLKLQEEA 84
           AL+T+LKLQ+EA
Sbjct: 141 ALQTILKLQDEA 150

BLAST of Lsi02G003550 vs. NCBI nr
Match: KAG6573044.1 (Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-15
Identity = 53/79 (67.09%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 1  MALADVMANSSSSSHHNVADSSLKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTA 60
          MA  D++ NS+SS + NVA S LKRKRREARE+RRKVQKLRWVV GGR LRREHLFAKTA
Sbjct: 1  MASPDLVPNSTSSFYDNVAPSRLKRKRREAREIRRKVQKLRWVVAGGRALRREHLFAKTA 60

Query: 61 HYILHLRLKVCALETVLKL 80
           YIL+L   +     VL L
Sbjct: 61 SYILYLSFPLLFSPFVLHL 79

BLAST of Lsi02G003550 vs. NCBI nr
Match: KAE8124179.1 (hypothetical protein FH972_019086 [Carpinus fangiana])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 25 RKRREAREVRRKVQKLRWVVPGGRGLRREHLFAKTAHYILHLRLKVCALETVLKLQE 82
          R +R  R V+ KVQKL+ +VPGG GL+ ++LFA+TA+YILHLRL+V ALE+VL+L +
Sbjct: 28 RGKRRQRAVQMKVQKLQRIVPGGDGLQPDNLFAQTANYILHLRLQVYALESVLRLNQ 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UGX93.7e-2887.50Transcription factor PAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5N6RR972.1e-0759.65Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019086 PE=4 SV=1[more]
A0A0A0LQU93.6e-0787.80UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045930 PE... [more]
A0A438EHL03.9e-0654.24BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070132 PE=4 S... [more]
A0A438JND23.9e-0654.24BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_016970 PE=4 S... [more]
Match NameE-valueIdentityDescription
KAA0055213.17.6e-2887.50transcription factor PAR1-like [Cucumis melo var. makuwa] >TYJ99143.1 transcript... [more]
KAG7019830.13.6e-2283.33hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584233.13.6e-2283.33hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573044.11.9e-1567.09Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8124179.14.3e-0759.65hypothetical protein FH972_019086 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableCOILSCoilCoilcoord: 69..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePANTHERPTHR33124:SF9TRANSCRIPTION FACTORcoord: 24..77
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 24..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G003550.1Lsi02G003550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated