Lsi02G002470 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACGACGTCAGTGGGTCCCACTCGCGAGATCTCAACGGTCTCCATGTGCATACGGTGACAATCTCTGAGCGACAAACATGTCATTTTATCATCTCCTCAACTCTCCAATCCTTTAGTTGCAGGAGCAAAGAAGAAGAATAGAAAGAAACAAACAAACGCCATGGGAAGACTCAGAGCTAAAACCGACTACGAAGATCTCAGAAACGCTCGCATTTTAGAGAATAAGGTCTCTCTTTCAATCCTTTTTCTTCTTCTTCTTCTTCTTCTTCATTCTTTGTGTGTTCTGATTTGATGGAAATTTGCTAGATCAGGAGCGATTGGCGTCGCTAGGGTTGAAGAAGGCAGCATCCGAACTTCGTTCCATTATTTCCTCTGCCAAATCGGCAAAGATCCACGCTAGAAAATGTCACAACACGCTCTCCCGGATTTCTCTTCCTCTTCGTCGTTCCGATCGATTGAAGCAGATTTCACCGGACTCCACTCCGGTGCGTTGCCAGCTTTCTTCTGGAGGTCCGACAGATTGAAGGGGAGATTAGTTCACAGTCTAAAATTCGAGTGTAATGAAGGTAGATCTCAATGGAGAAATAGTTGAAGAGTATAGTATATTCAAGTAGGTAATGATTTTTTGTTTACCGATGTTTGCTTTTGCAGTGGGGGAAGATATTATGAAGAGGCCTGCGAATGCTCCTTTAGTGGAAATCAGTGATTTGGAACATCGGCTTTCGCCGGACGCTTCGGCACGGAGGTGTAATAGTAAGGGACGAGGGAGTGTTTATGATGCAATTTTTTGAATCTGCTGCCATTTCTGCAGGTACATTCAAATTCAATCTTCTGTTCTTCCAGTTCTGATGAATGGTGTTGAAATTTAGTTGGTGTGTAGGCAGAAGAAATTATGTGGCGAAGAAGATTGCAAGAGATGTGGCGATTTCGATATGGATAAACCATGCATCGGTCAGTGATTTAAACGAAATATATCTCAGTTATAATATATCAGTAGTCGAAATGAACTGACTGTTACCCTATAGGAAAAACGGATTGCTCTGTTTGTCATTCCTCCAATGGTGTCTTTTGCCGAGCTTGTCTGAAGGTCAGATATGGCGAAGGTAAAACATCTCTCTCCAATACAAAATGCTGATCAAAATCTTTAAGACATAGAGTGAATATTGAAATGGTGTTGTGTTGTTTGTTGATTAGAAATGGAAGGAGTGATTAAGAACAAGAAATGGATGTGCCCTCATTGTATGGAGGAGAAAGGAATCAACCCATATTGGATATGCAACAGGTTTGTTTGATTTTGAGGTCTTTAGAAACAGGGTATTGGATAATTGTTGTGTAGCTGTTTTTGCAGTTCATTGTGCTTGAAGAAGCGCAAGATGGCTCCAACTGGGCTTGCCATTTACAGAGGTTATTGAATTTTCTCTATTTTAGTATATGAATTTGATGTGTTATTGTTTGGTTTCGGGTCATCATTTTTTGTTTTGAATTTTGCAGCTCGGGAAATGGGTTACGAATCTGTTGCACATTTGTTAATGGATGAGCTTAAGCGAGCAGATTTATGCAACAGATAAGCCTTCGTTCTCTCTTTTTTATTTCTGATCGACTAGGGTTTCTAGTGATGTGAAGTGTAACAGTAGGAGCTTTTTCTCTAGTCTGTATCATATATTTCATAATCATCAATGCATAAAGTATTAGATTTCCCCAGTTTGAGTTCAACACTGCTTGATGTCTCTTTGGGCCACATACTTTGATTTGACTTATAATTTTAG AACGACGTCAGTGGGTCCCACTCGCGAGATCTCAACGGTCTCCATGTGCATACGGTGACAATCTCTGAGCGACAAACATGTCATTTTATCATCTCCTCAACTCTCCAATCCTTTAGTTGCAGGAGCAAAGAAGAAGAATAGAAAGAAACAAACAAACGCCATGGGAAGACTCAGAGCTAAAACCGACTACGAAGATCTCAGAAACGCTCGCATTTTAGAGAATAAGGAGCGATTGGCGTCGCTAGGGTTGAAGAAGGCAGCATCCGAACTTCGTTCCATTATTTCCTCTGCCAAATCGGCAAAGATCCACGCTAGAAAATGTCACAACACGCTCTCCCGGATTTCTCTTCCTCTTCGTCGTTCCGATCGATTGAAGCAGATTTCACCGGACTCCACTCCGGTGCGTTGCCAGCTTTCTTCTGGAGTGGGGGAAGATATTATGAAGAGGCCTGCGAATGCTCCTTTAGTGGAAATCAGTGATTTGGAACATCGGCTTTCGCCGGACGCTTCGGCACGGAGGCAGAAGAAATTATGTGGCGAAGAAGATTGCAAGAGATGTGGCGATTTCGATATGGATAAACCATGCATCGGAAAAACGGATTGCTCTGTTTGTCATTCCTCCAATGGTGTCTTTTGCCGAGCTTGTCTGAAGGTCAGATATGGCGAAGAAATGGAAGGAGTGATTAAGAACAAGAAATGGATGTGCCCTCATTGTATGGAGGAGAAAGGAATCAACCCATATTGGATATGCAACAGTTCATTGTGCTTGAAGAAGCGCAAGATGGCTCCAACTGGGCTTGCCATTTACAGAGCTCGGGAAATGGGTTACGAATCTGTTGCACATTTGTTAATGGATGAGCTTAAGCGAGCAGATTTATGCAACAGATAAGCCTTCGTTCTCTCTTTTTTATTTCTGATCGACTAGGGTTTCTAGTGATGTGAAGTGTAACAGTAGGAGCTTTTTCTCTAGTCTGTATCATATATTTCATAATCATCAATGCATAAAGTATTAGATTTCCCCAGTTTGAGTTCAACACTGCTTGATGTCTCTTTGGGCCACATACTTTGATTTGACTTATAATTTTAG ATGGGAAGACTCAGAGCTAAAACCGACTACGAAGATCTCAGAAACGCTCGCATTTTAGAGAATAAGGAGCGATTGGCGTCGCTAGGGTTGAAGAAGGCAGCATCCGAACTTCGTTCCATTATTTCCTCTGCCAAATCGGCAAAGATCCACGCTAGAAAATGTCACAACACGCTCTCCCGGATTTCTCTTCCTCTTCGTCGTTCCGATCGATTGAAGCAGATTTCACCGGACTCCACTCCGGTGCGTTGCCAGCTTTCTTCTGGAGTGGGGGAAGATATTATGAAGAGGCCTGCGAATGCTCCTTTAGTGGAAATCAGTGATTTGGAACATCGGCTTTCGCCGGACGCTTCGGCACGGAGGCAGAAGAAATTATGTGGCGAAGAAGATTGCAAGAGATGTGGCGATTTCGATATGGATAAACCATGCATCGGAAAAACGGATTGCTCTGTTTGTCATTCCTCCAATGGTGTCTTTTGCCGAGCTTGTCTGAAGGTCAGATATGGCGAAGAAATGGAAGGAGTGATTAAGAACAAGAAATGGATGTGCCCTCATTGTATGGAGGAGAAAGGAATCAACCCATATTGGATATGCAACAGTTCATTGTGCTTGAAGAAGCGCAAGATGGCTCCAACTGGGCTTGCCATTTACAGAGCTCGGGAAATGGGTTACGAATCTGTTGCACATTTGTTAATGGATGAGCTTAAGCGAGCAGATTTATGCAACAGATAA MGRLRAKTDYEDLRNARILENKERLASLGLKKAASELRSIISSAKSAKIHARKCHNTLSRISLPLRRSDRLKQISPDSTPVRCQLSSGVGEDIMKRPANAPLVEISDLEHRLSPDASARRQKKLCGEEDCKRCGDFDMDKPCIGKTDCSVCHSSNGVFCRACLKVRYGEEMEGVIKNKKWMCPHCMEEKGINPYWICNSSLCLKKRKMAPTGLAIYRAREMGYESVAHLLMDELKRADLCNR Homology
BLAST of Lsi02G002470 vs. ExPASy Swiss-Prot
Match: Q922M5 (Cell division cycle-associated 7-like protein OS=Mus musculus OX=10090 GN=Cdca7l PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08 Identity = 34/103 (33.01%), Postives = 48/103 (46.60%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy Swiss-Prot
Match: Q32PH1 (Cell division cycle-associated protein 7 OS=Bos taurus OX=9913 GN=CDCA7 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08 Identity = 35/109 (32.11%), Postives = 52/109 (47.71%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy Swiss-Prot
Match: Q96GN5 (Cell division cycle-associated 7-like protein OS=Homo sapiens OX=9606 GN=CDCA7L PE=1 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 4.1e-08 Identity = 34/103 (33.01%), Postives = 48/103 (46.60%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy Swiss-Prot
Match: Q4G059 (Cell division cycle-associated 7-like protein OS=Rattus norvegicus OX=10116 GN=Cdca7l PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.1e-08 Identity = 34/103 (33.01%), Postives = 48/103 (46.60%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy Swiss-Prot
Match: Q9BWT1 (Cell division cycle-associated protein 7 OS=Homo sapiens OX=9606 GN=CDCA7 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 5.3e-08 Identity = 35/109 (32.11%), Postives = 51/109 (46.79%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy TrEMBL
Match: A0A0A0LQX9 (zf-4CXXC_R1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042940 PE=4 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 3.7e-113 Identity = 215/279 (77.06%), Postives = 229/279 (82.08%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy TrEMBL
Match: A0A5D3BL14 (Cell division cycle-associated protein 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002490 PE=4 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111 Identity = 215/279 (77.06%), Postives = 227/279 (81.36%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy TrEMBL
Match: A0A1S3CR96 (cell division cycle-associated protein 7-like OS=Cucumis melo OX=3656 GN=LOC103503820 PE=4 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111 Identity = 215/279 (77.06%), Postives = 227/279 (81.36%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy TrEMBL
Match: A0A6J1KNP6 (cell division cycle-associated protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111495834 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 6.8e-107 Identity = 206/279 (73.84%), Postives = 219/279 (78.49%), Query Frame = 0
BLAST of Lsi02G002470 vs. ExPASy TrEMBL
Match: A0A6J1E6S5 (cell division cycle-associated protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111431319 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 6.8e-107 Identity = 206/279 (73.84%), Postives = 221/279 (79.21%), Query Frame = 0
BLAST of Lsi02G002470 vs. NCBI nr
Match: XP_038895128.1 (cell division cycle-associated 7-like protein [Benincasa hispida]) HSP 1 Score: 435.6 bits (1119), Expect = 2.7e-118 Identity = 225/283 (79.51%), Postives = 233/283 (82.33%), Query Frame = 0
BLAST of Lsi02G002470 vs. NCBI nr
Match: XP_004137512.1 (cell division cycle-associated protein 7 isoform X1 [Cucumis sativus] >KGN64188.1 hypothetical protein Csa_014038 [Cucumis sativus]) HSP 1 Score: 417.5 bits (1072), Expect = 7.6e-113 Identity = 215/279 (77.06%), Postives = 229/279 (82.08%), Query Frame = 0
BLAST of Lsi02G002470 vs. NCBI nr
Match: XP_008466442.1 (PREDICTED: cell division cycle-associated protein 7-like [Cucumis melo] >TYJ99045.1 cell division cycle-associated protein 7-like [Cucumis melo var. makuwa]) HSP 1 Score: 410.6 bits (1054), Expect = 9.3e-111 Identity = 215/279 (77.06%), Postives = 227/279 (81.36%), Query Frame = 0
BLAST of Lsi02G002470 vs. NCBI nr
Match: KAG7019901.1 (Cell division cycle-associated 7-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107 Identity = 208/279 (74.55%), Postives = 221/279 (79.21%), Query Frame = 0
BLAST of Lsi02G002470 vs. NCBI nr
Match: KAG6584308.1 (Cell division cycle-associated 7-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 399.8 bits (1026), Expect = 1.6e-107 Identity = 208/279 (74.55%), Postives = 221/279 (79.21%), Query Frame = 0
BLAST of Lsi02G002470 vs. TAIR 10
Match: AT4G37110.1 (Zinc-finger domain of monoamine-oxidase A repressor R1 ) HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17 Identity = 79/264 (29.92%), Postives = 118/264 (44.70%), Query Frame = 0
BLAST of Lsi02G002470 vs. TAIR 10
Match: AT2G23530.1 (Zinc-finger domain of monoamine-oxidase A repressor R1 ) HSP 1 Score: 82.0 bits (201), Expect = 7.1e-16 Identity = 74/249 (29.72%), Postives = 105/249 (42.17%), Query Frame = 0
BLAST of Lsi02G002470 vs. TAIR 10
Match: AT5G38690.1 (Zinc-finger domain of monoamine-oxidase A repressor R1 protein ) HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10 Identity = 36/120 (30.00%), Postives = 53/120 (44.17%), Query Frame = 0
BLAST of Lsi02G002470 vs. TAIR 10
Match: AT1G67780.1 (Zinc-finger domain of monoamine-oxidase A repressor R1 protein ) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-10 Identity = 32/73 (43.84%), Postives = 39/73 (53.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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