Lsi01G019160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G019160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 23667430 .. 23667732 (+)
RNA-Seq ExpressionLsi01G019160
SyntenyLsi01G019160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

mRNA sequence

ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

Coding sequence (CDS)

ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA

Protein sequence

MQVRMDEAGVGALASIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLKVGIVASKVVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNVSY
Homology
BLAST of Lsi01G019160 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 9.8e-14
Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 6   DEAGVGALASIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLKVGIV-ASK 65
           ++AG GALA IPL S ++NS E+GGREID           DD GTS IDSLK+ +V +S+
Sbjct: 21  NDAGNGALAPIPLGSKLINSSEVGGREID----------DDDSGTSAIDSLKLRMVDSSR 80

Query: 66  VVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNVS 100
           VVG C +S M L VAM +DGEDM  RKKNVKK  S
Sbjct: 81  VVGGCAKSSMPLVVAMILDGEDMAMRKKNVKKTTS 105

BLAST of Lsi01G019160 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 35 VNSLELGGREI--DDLGTSTIDSLKVGIV-ASKVVGACIESRMVLEVAMSVDGEDMIRRK 94
          +NS E+GGREI  DD GTS IDSLK+ +V +S+VVG C +S M L VAM ++GEDM  RK
Sbjct: 18 INSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMPLVVAMILNGEDMAMRK 77

BLAST of Lsi01G019160 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 7   EAGVGALASIPLRSTVVNSLELGGREID-------------VNSLELGGREIDDLG---- 66
           E G+GALA   L S V    E+GG +ID             V +  L G ++D       
Sbjct: 18  EEGIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEGTKLDPFNKKGW 77

Query: 67  -TSTIDSLKVGIVASKVVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNV 99
            +S +D+L+VGIVAS VV AC ES M LEVA S + ED ++RKK  ++N+
Sbjct: 78  RSSAMDALEVGIVASNVVRACTESSMALEVATSEEEEDTVKRKKKNQENL 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649712.19.8e-1456.84hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAE8649705.18.9e-0761.29hypothetical protein Csa_011947, partial [Cucumis sativus][more]
KAG6581979.13.4e-0640.91OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019160.1Lsi01G019160.1mRNA