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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA mRNA sequence ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA Coding sequence (CDS) ATGCAAGTTAGGATGGATGAGGCAGGGGTAGGTGCGCTTGCATCCATTCCACTAAGATCAACAGTGGTAAATTCGTTAGAGCTTGGAGGAAGGGAAATTGATGTAAACTCGTTAGAGCTTGGAGGAAGAGAAATTGATGATTTAGGTACTTCAACAATAGATTCTCTAAAAGTAGGAATTGTAGCTTCCAAAGTTGTTGGAGCATGTATTGAATCAAGAATGGTTCTAGAAGTTGCCATGAGTGTGGATGGAGAAGACATGATAAGGAGGAAGAAGAATGTGAAGAAGAATGTATCATATTGA Protein sequence MQVRMDEAGVGALASIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLKVGIVASKVVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNVSY
Homology
BLAST of Lsi01G019160 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus]) HSP 1 Score: 87.0 bits (214), Expect = 9.8e-14 Identity = 54/95 (56.84%), Postives = 65/95 (68.42%), Query Frame = 0 Query: 6 DEAGVGALASIPLRSTVVNSLELGGREIDVNSLELGGREIDDLGTSTIDSLKVGIV-ASK 65 ++AG GALA IPL S ++NS E+GGREID DD GTS IDSLK+ +V +S+ Sbjct: 21 NDAGNGALAPIPLGSKLINSSEVGGREID----------DDDSGTSAIDSLKLRMVDSSR 80
Query: 66 VVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNVS 100 VVG C +S M L VAM +DGEDM RKKNVKK S Sbjct: 81 VVGGCAKSSMPLVVAMILDGEDMAMRKKNVKKTTS 105
BLAST of Lsi01G019160 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus]) HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07 Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0 Query: 35 VNSLELGGREI--DDLGTSTIDSLKVGIV-ASKVVGACIESRMVLEVAMSVDGEDMIRRK 94 +NS E+GGREI DD GTS IDSLK+ +V +S+VVG C +S M L VAM ++GEDM RK Sbjct: 18 INSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCAKSSMPLVVAMILNGEDMAMRK 77
BLAST of Lsi01G019160 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 0 Query: 7 EAGVGALASIPLRSTVVNSLELGGREID-------------VNSLELGGREIDDLG---- 66 E G+GALA L S V E+GG +ID V + L G ++D Sbjct: 18 EEGIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEGTKLDPFNKKGW 77
Query: 67 -TSTIDSLKVGIVASKVVGACIESRMVLEVAMSVDGEDMIRRKKNVKKNV 99 +S +D+L+VGIVAS VV AC ES M LEVA S + ED ++RKK ++N+ Sbjct: 78 RSSAMDALEVGIVASNVVRACTESSMALEVATSEEEEDTVKRKKKNQENL 127
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAE8649712.1 | 9.8e-14 | 56.84 | hypothetical protein Csa_012861, partial [Cucumis sativus] | [more] |
KAE8649705.1 | 8.9e-07 | 61.29 | hypothetical protein Csa_011947, partial [Cucumis sativus] | [more] |
KAG6581979.1 | 3.4e-06 | 40.91 | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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