Lsi01G016100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G016100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Location	chr01: 14474179 .. 14474791 (-)
RNA-Seq Expression	Lsi01G016100
Synteny	Lsi01G016100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGGTAGGAATTGAGCTTGGGAAAATTGAAGAGTTCAAGAAGTGAGATGATATTTGTGCCAAATTTGCTTGGAAGCAAAACCTCTTTCTCCATTGAGCTCAAATTTTCAAACTTAAATATATTGAAAAATCATTCCCATTCAAAAATCATCTCTATTTCTGATCAAATCTCCATTGCCTTTCTTCTTCTTTCCCTTTACTTTCTTTACACTTACATTTCTTCATTCTTTAAACCCAAATAAAACCAATATACAAATAAAAATCCTTCCTTTTTTCTTCCCCCCTCTTTGTGATTTGATATATACATATATTTCTATTCAAAGTTTTTTAATATAGATTTCATTGATTGATTATTGGTTTTGTATAGAAATTGTGGTGTGGGCATTTGGGTTTGAAAATATTTCTACACATTATTTGTGTTTATTGAATATATACATACATTGTAATATAAGTGTGGAATATTTGGGAATGAATCTCTTATCTTAGAGTGGGAGAAATAAGAAAGTTTCGAGTGTATTAATGTCGAAGTTTCTTTGTAAATTTACATTTTTTTTAACGTTGTTTATACATTAAGCAATACTGTGTATTGATGATAGTGATTTTCTCTT

mRNA sequence

ATGGTTTTGGAATTGAGCTTGGGAAAATTGAAGAGTTCAAGAAGTGAGATGATATTTGTGCCAAATTTGCTTGGAAGCAAAACCTCTTTCTCCATTGAGCTCAAATTTTCAAACTTAAATATATTGAAAAATCATTCCCATTCAAAAATCATCTCTATTTCTGATCAAATCTCCATTGCCTTTCTTCTTCTTTCCCTTTACTTTCTTTACACTTACATTTCTTCATTCTTTAAACCCAAATAAAACCAATATACAAATAAAAATCCTTCCTTTTTTCTTCCCCCCTCTTTGTGATTTGATATATACATATATTTCTATTCAAAGTTTTTTAATATAGATTTCATTGATTGATTATTGGTTTTGTATAGAAATTGTGGTGTGGGCATTTGGGTTTGAAAATATTTCTACACATTATTTGTGTTTATTGAATATATACATACATTGTAATATAAGTGTGGAATATTTGGGAATGAATCTCTTATCTTAGAGTGGGAGAAATAAGAAAGTTTCGAGTGTATTAATGTCGAAGTTTCTTTGTAAATTTACATTTTTTTTAACGTTGTTTATACATTAAGCAATACTGTGTATTGATGATAGTGATTTTCTCTT

Coding sequence (CDS)

ATGGTTTTGGAATTGAGCTTGGGAAAATTGAAGAGTTCAAGAAGTGAGATGATATTTGTGCCAAATTTGCTTGGAAGCAAAACCTCTTTCTCCATTGAGCTCAAATTTTCAAACTTAAATATATTGAAAAATCATTCCCATTCAAAAATCATCTCTATTTCTGATCAAATCTCCATTGCCTTTCTTCTTCTTTCCCTTTACTTTCTTTACACTTACATTTCTTCATTCTTTAAACCCAAATAA

Protein sequence

MVLELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAFLLLSLYFLYTYISSFFKPK

Homology

[Close]

BLAST of Lsi01G016100 vs. ExPASy TrEMBL
Match: A0A1S3CIU6 (uncharacterized protein LOC103501456 OS=Cucumis melo OX=3656 GN=LOC103501456 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNIL----KNHSHSKIISISDQISI 63
           E+S+GKLKS+RSEMIFVP+LLG++TSFSI+LKFSN N+L     N+SHSKIISISDQI +
Sbjct: 294 EMSIGKLKSARSEMIFVPDLLGTQTSFSIDLKFSNPNLLLSNNNNNSHSKIISISDQIFV 353

Query: 64  AFLLLSLYFLYTYISSFFKP 80
           AFLLLSLYFLYTYISSFFKP
Sbjct: 354 AFLLLSLYFLYTYISSFFKP 373

[Close]

BLAST of Lsi01G016100 vs. ExPASy TrEMBL
Match: A0A6J1GEV0 (uncharacterized protein LOC111453527 OS=Cucurbita moschata OX=3662 GN=LOC111453527 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.1e-17
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2   VLELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAF 61
           ++E SLGKLKS+RSEM FVP+LLGS TSFSIEL+ SN N++K HSHSKII+I DQI +AF
Sbjct: 261 LVEQSLGKLKSARSEMTFVPDLLGSGTSFSIELEVSNTNLVKKHSHSKIITIYDQILVAF 320

Query: 62  LLLSLYFLYTYISSFFKPK 81
            ++S+Y LY ++ S FK K
Sbjct: 321 YVISVYVLYNFMCSLFKGK 339

[Close]

BLAST of Lsi01G016100 vs. ExPASy TrEMBL
Match: A0A6J1ITI2 (uncharacterized protein LOC111478267 OS=Cucurbita maxima OX=3661 GN=LOC111478267 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.8e-14
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 2   VLELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAF 61
           ++E S  KLKS+RSEM FVP+LLGS TSFSIEL+ SN N++K HSHS II+I DQI +AF
Sbjct: 261 LVERSSEKLKSARSEMTFVPDLLGSGTSFSIELQVSNTNLVKKHSHSNIITIYDQIMVAF 320

Query: 62  LLLSLYFLYTYISSFFKPK 81
            ++S+Y LY  + S FK K
Sbjct: 321 YVISVYVLYNCMCSLFKGK 339

[Close]

BLAST of Lsi01G016100 vs. ExPASy TrEMBL
Match: A0A6J1CSG7 (uncharacterized protein LOC111013795 OS=Momordica charantia OX=3673 GN=LOC111013795 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAFLL 63
           E S+GKLKS+RS+MIFVPN  GS++ FSIELK S+  +L N  HS IISISDQI IA LL
Sbjct: 274 EWSMGKLKSARSKMIFVPN--GSQSPFSIELKISHPKLLHN-PHSNIISISDQIFIALLL 333

Query: 64  LSLYFLYTYISSFFKPK 81
            SLY LYTY SS FK K
Sbjct: 334 FSLYLLYTYTSSLFKAK 347

[Close]

BLAST of Lsi01G016100 vs. ExPASy TrEMBL
Match: A0A5B6YL99 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_002015 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKI---ISISDQISIA 63
           E SLG+ KS+  ++IF PNL GS+ SFS+ELK    N   NHSHSKI   ISI+DQI I 
Sbjct: 291 EWSLGQFKSASGQLIFEPNLHGSRASFSVELKCWPSNF--NHSHSKINKTISIADQILII 350

Query: 64  FLLLSLYFLYTYISS 76
            ++  LY ++ +ISS
Sbjct: 351 LIVAFLYKIFMFISS 363

[Close]

BLAST of Lsi01G016100 vs. NCBI nr
Match: XP_008463252.1 (PREDICTED: uncharacterized protein LOC103501456 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 63/80 (78.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNIL----KNHSHSKIISISDQISI 63
           E+S+GKLKS+RSEMIFVP+LLG++TSFSI+LKFSN N+L     N+SHSKIISISDQI +
Sbjct: 294 EMSIGKLKSARSEMIFVPDLLGTQTSFSIDLKFSNPNLLLSNNNNNSHSKIISISDQIFV 353

Query: 64  AFLLLSLYFLYTYISSFFKP 80
           AFLLLSLYFLYTYISSFFKP
Sbjct: 354 AFLLLSLYFLYTYISSFFKP 373

[Close]

BLAST of Lsi01G016100 vs. NCBI nr
Match: XP_038881407.1 (uncharacterized protein LOC120072944, partial [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNH-SHSKIISISDQISIAFL 63
           ELSLGKLKS+RSEMIF+ +LLGSK SFSIELK SN N+LKNH SHSKIISISDQI IAFL
Sbjct: 273 ELSLGKLKSARSEMIFLTDLLGSKASFSIELKISNPNLLKNHNSHSKIISISDQIFIAFL 332

Query: 64  LLSLYFLYTYISSFFKPK 81
            LSLYFLYT+ISSFFK K
Sbjct: 333 FLSLYFLYTHISSFFKGK 350

[Close]

BLAST of Lsi01G016100 vs. NCBI nr
Match: XP_011653719.1 (uncharacterized protein LOC101207912 [Cucumis sativus] >KAE8649590.1 hypothetical protein Csa_012180 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNIL----KNHSHSKIISISDQISI 63
           E+S+GKLKS+RSEMIFVP+LLG++TSFSI+LKFSN N+L     N+SHSK+ISISDQI  
Sbjct: 299 EMSMGKLKSARSEMIFVPDLLGTQTSFSIDLKFSNPNLLLNNNNNNSHSKVISISDQIFF 358

Query: 64  AFLLLSLYFLYTYISSFFKP 80
           AFLLLSL+FLYT ISSFFKP
Sbjct: 359 AFLLLSLHFLYTCISSFFKP 378

[Close]

BLAST of Lsi01G016100 vs. NCBI nr
Match: XP_022950423.1 (uncharacterized protein LOC111453527 [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2   VLELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAF 61
           ++E SLGKLKS+RSEM FVP+LLGS TSFSIEL+ SN N++K HSHSKII+I DQI +AF
Sbjct: 261 LVEQSLGKLKSARSEMTFVPDLLGSGTSFSIELEVSNTNLVKKHSHSKIITIYDQILVAF 320

Query: 62  LLLSLYFLYTYISSFFKPK 81
            ++S+Y LY ++ S FK K
Sbjct: 321 YVISVYVLYNFMCSLFKGK 339

[Close]

BLAST of Lsi01G016100 vs. NCBI nr
Match: XP_023544633.1 (uncharacterized protein LOC111804157 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-16
Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2   VLELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNHSHSKIISISDQISIAF 61
           ++E SLGKLKS+RSEM FVP+LLGS+TSFSIEL+ SN N++K HSHSKII+I DQI +AF
Sbjct: 261 LVERSLGKLKSARSEMTFVPDLLGSRTSFSIELEVSNRNLVKKHSHSKIITIYDQILVAF 320

Query: 62  LLLSLYFLYTYISSFFKPK 81
            ++S+Y LY  + S FK K
Sbjct: 321 YVISVYVLYNCMCSLFKGK 339

[Close]

BLAST of Lsi01G016100 vs. TAIR 10
Match: AT2G38500.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.5e-04
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 4   ELSLGKLKSSRSEMIFVPNLLGSKTSFSIELKFSNLNILKNH--SHSKIISISDQISIAF 63
           E SLG+ K  + E+I+ P+  GS TSFS+ELK  +L +      + SK  S++ QI  AF
Sbjct: 279 EWSLGEFKCRQGEIIYHPDAYGSPTSFSVELKCMSLFLSHTSIATTSKTFSLTHQIFTAF 338

Query: 64  LLLSLY 68
           LLL  +
Sbjct: 339 LLLFFF 344

The following BLAST results are available for this feature:

BLAST of Lsi01G016100 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G016100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIU6	1.3e-22	78.75	uncharacterized protein LOC103501456 OS=Cucumis melo OX=3656 GN=LOC103501456 PE=...	[more]
A0A6J1GEV0	8.1e-17	64.56	uncharacterized protein LOC111453527 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1ITI2	3.8e-14	60.76	uncharacterized protein LOC111478267 OS=Cucurbita maxima OX=3661 GN=LOC111478267...	[more]
A0A6J1CSG7	3.2e-13	67.53	uncharacterized protein LOC111013795 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5B6YL99	5.0e-06	52.00	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_002015...	[more]

BLAST of Lsi01G016100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463252.1	2.7e-22	78.75	PREDICTED: uncharacterized protein LOC103501456 [Cucumis melo]	[more]
XP_038881407.1	1.0e-21	83.33	uncharacterized protein LOC120072944, partial [Benincasa hispida]	[more]
XP_011653719.1	3.3e-20	75.00	uncharacterized protein LOC101207912 [Cucumis sativus] >KAE8649590.1 hypothetica...	[more]
XP_022950423.1	1.7e-16	64.56	uncharacterized protein LOC111453527 [Cucurbita moschata]	[more]
XP_023544633.1	2.9e-16	64.56	uncharacterized protein LOC111804157 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G016100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38500.1	3.5e-04	42.42	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G016100.1	Lsi01G016100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane