Lsi01G013440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G013440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L12-like
Location	chr01: 11638828 .. 11639328 (+)
RNA-Seq Expression	Lsi01G013440
Synteny	Lsi01G013440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTCGTCCGAGTCACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCCCCGAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCTTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAGCGAGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATCGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCGAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATTCCCCAGGATTGA

mRNA sequence

ATGCCGCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTCGTCCGAGTCACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCCCCGAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCTTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAGCGAGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATCGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCGAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATTCCCCAGGATTGA

Coding sequence (CDS)

ATGCCGCCCAAGTTCGATCCTTCTCAGGTTGTCGATGTTTTCGTCCGAGTCACCGGAGGTGAGGTCGGAGCGGCCAGTTCTCTCGCTCCTAAAATCGGTCCTCTAGGTCTCTCCCCGAAGAAGATCGGAGAAGACATTGCCAAGGAGACTGCCAAGGAATGGAAGGGTCTCAGAGTCACTGTCAAGCTTACTGTGCAGAACCGTCAAGCCAAGGTCTCGGTTGTTCCTTCTGCTGCTGCTTTGGTCATCAAGGCCCTCAAGGAGCCTGAGCGAGACCGCAAAAAGACCAAGAACATCAAGCACAATGGTAATATCTCGCTTGACGATGTGATTGAGATCGCTAGGGTTATGCGCCCCAGGTCTATGGCTAAGGATCTCAGTGGATCCGTCAAGGAGATTCTCGGTACTTGCGTTTCTGTTGGATGTACGGTCGACGGTAAGGACCCGAAGGATTTACAGCAGGAAATTACTGATGGAGATGTTGAAATTCCCCAGGATTGA

Protein sequence

MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD

Homology

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BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot
Match: P50883 (60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-79
Identity = 148/166 (89.16%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot
Match: Q9FF52 (60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-79
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot
Match: O50003 (60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-79
Identity = 151/166 (90.96%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA +WKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKH+G+ISLDDVIEIA++M+ R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAK+L+G+VKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIP D
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot
Match: Q9LFH5 (60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-79
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot
Match: P0CT83 (60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl1201 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-64
Identity = 121/166 (72.89%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDP++V  +F+R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T K+WKGLRVT
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLT+QNRQA VSVVPSA+ALVIKALKEP RDRKK KN+ H+GN+SLD++IE+AR MR +
Sbjct: 61  VKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGT  SVGCTVDGK+P D+Q+EI +G++EIPQ+
Sbjct: 121 SLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQE 165

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BLAST of Lsi01G013440 vs. ExPASy TrEMBL
Match: A0A6J1J2K8 (60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.2e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy TrEMBL
Match: A0A6J1F4X7 (60S ribosomal protein L12-1-like OS=Cucurbita moschata OX=3662 GN=LOC111442375 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.2e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy TrEMBL
Match: A0A6J1KW77 (60S ribosomal protein L12-3 OS=Cucurbita maxima OX=3661 GN=LOC111498745 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.5e-84
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy TrEMBL
Match: A0A6J1GE12 (60S ribosomal protein L12-3 OS=Cucurbita moschata OX=3662 GN=LOC111453329 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.5e-84
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]

BLAST of Lsi01G013440 vs. ExPASy TrEMBL
Match: A0A6J1CQD9 (60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.2e-84
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. NCBI nr
Match: XP_038883892.1 (60S ribosomal protein L12-1-like [Benincasa hispida])

HSP 1 Score: 322.4 bits (825), Expect = 2.3e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. NCBI nr
Match: XP_022935531.1 (60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S ribosomal protein L12-1-like [Cucurbita maxima] >XP_038903166.1 60S ribosomal protein L12-1 [Benincasa hispida] >KAG6580604.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017359.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.9 bits (821), Expect = 6.7e-84
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI+DGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. NCBI nr
Match: XP_022950157.1 (60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal protein L12-3 [Cucurbita maxima] >XP_023540179.1 60S ribosomal protein L12-3 [Cucurbita pepo subsp. pepo] >KAG6596472.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028017.1 60S ribosomal protein L12-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEI DGDVE+PQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEVPQD 166

[Close]

BLAST of Lsi01G013440 vs. NCBI nr
Match: XP_022143990.1 (60S ribosomal protein L12-like [Momordica charantia])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDL G+VKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLGGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. NCBI nr
Match: XP_004143249.1 (60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >XP_008449248.1 PREDICTED: 60S ribosomal protein L12-1 [Cucumis melo] >KAA0044012.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KAA0047260.1 60S ribosomal protein L12 [Cucumis melo var. makuwa] >KGN48153.1 hypothetical protein Csa_003143 [Cucumis sativus] >TYK25128.1 60S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-83
Identity = 164/166 (98.80%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQVV+VFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD
Sbjct: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 166

[Close]

BLAST of Lsi01G013440 vs. TAIR 10
Match: AT2G37190.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 297.4 bits (760), Expect = 7.4e-81
Identity = 148/166 (89.16%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Lsi01G013440 vs. TAIR 10
Match: AT5G60670.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-80
Identity = 147/166 (88.55%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDVIEIA++MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+VKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP +
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIPNE 166

[Close]

BLAST of Lsi01G013440 vs. TAIR 10
Match: AT3G53430.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-80
Identity = 147/166 (88.55%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 1   MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKEWKGLRVT 60
           MPPK DPSQ+VDV+VRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAKEWKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKK KNIKHNGNIS DDV EIAR+MRPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPQD 167
           S+AK+LSG+V+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP++
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

The following BLAST results are available for this feature:

BLAST of Lsi01G013440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P50883	1.0e-79	89.16	60S ribosomal protein L12-1 OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=2	[more]
Q9FF52	1.8e-79	88.55	60S ribosomal protein L12-3 OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=1	[more]
O50003	1.8e-79	90.96	60S ribosomal protein L12 OS=Prunus armeniaca OX=36596 GN=RPL12 PE=2 SV=1	[more]
Q9LFH5	2.3e-79	88.55	60S ribosomal protein L12-2 OS=Arabidopsis thaliana OX=3702 GN=RPL12B PE=1 SV=1	[more]
P0CT83	1.6e-64	72.89	60S ribosomal protein L12-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of Lsi01G013440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2K8	3.2e-84	99.40	60S ribosomal protein L12-1-like OS=Cucurbita maxima OX=3661 GN=LOC111482107 PE=...	[more]
A0A6J1F4X7	3.2e-84	99.40	60S ribosomal protein L12-1-like OS=Cucurbita moschata OX=3662 GN=LOC111442375 P...	[more]
A0A6J1KW77	5.5e-84	98.80	60S ribosomal protein L12-3 OS=Cucurbita maxima OX=3661 GN=LOC111498745 PE=3 SV=...	[more]
A0A6J1GE12	5.5e-84	98.80	60S ribosomal protein L12-3 OS=Cucurbita moschata OX=3662 GN=LOC111453329 PE=3 S...	[more]
A0A6J1CQD9	7.2e-84	98.80	60S ribosomal protein L12-like OS=Momordica charantia OX=3673 GN=LOC111013771 PE...	[more]

BLAST of Lsi01G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883892.1	2.3e-84	100.00	60S ribosomal protein L12-1-like [Benincasa hispida]	[more]
XP_022935531.1	6.7e-84	99.40	60S ribosomal protein L12-1-like [Cucurbita moschata] >XP_022983536.1 60S riboso...	[more]
XP_022950157.1	1.1e-83	98.80	60S ribosomal protein L12-3 [Cucurbita moschata] >XP_023005871.1 60S ribosomal p...	[more]
XP_022143990.1	1.5e-83	98.80	60S ribosomal protein L12-like [Momordica charantia]	[more]
XP_004143249.1	3.3e-83	98.80	60S ribosomal protein L12-1 [Cucumis sativus] >XP_008442680.1 PREDICTED: 60S rib...	[more]

BLAST of Lsi01G013440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37190.1	7.4e-81	89.16	Ribosomal protein L11 family protein	[more]
AT5G60670.1	1.3e-80	88.55	Ribosomal protein L11 family protein	[more]
AT3G53430.1	1.6e-80	88.55	Ribosomal protein L11 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 e-value: 1.8E-56 score: 203.6
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 15.620409
IPR000911	Ribosomal protein L11/L12	CDD	cd00349	Ribosomal_L11	coord: 13..144 e-value: 7.08158E-52 score: 159.924
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	GENE3D	1.10.10.250		coord: 82..164 e-value: 9.1E-41 score: 139.9
IPR036769	Ribosomal protein L11, C-terminal domain superfamily	SUPERFAMILY	46906	Ribosomal protein L11, C-terminal domain	coord: 76..149
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 e-value: 5.8E-16 score: 58.8
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	GENE3D	3.30.1550.10		coord: 1..81 e-value: 2.2E-35 score: 122.5
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily	SUPERFAMILY	54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 12..70 e-value: 1.5E-19 score: 69.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..166
None	No IPR available	PANTHER	PTHR11661:SF27	60S RIBOSOMAL PROTEIN L12	coord: 1..166
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G013440.1	Lsi01G013440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070180	large ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome