Lsi01G008100 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGTAAGAAGAACCCTTTTCCACAGCATACTAATATAAATTGTGTCCTTTAAATCCCTTTGTAACTTTCGGCGGCGGTGGTTTGCAGGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA MCMQSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS Homology
BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07 Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 5.0e-05 Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3) HSP 1 Score: 43.9 bits (102), Expect = 9.4e-04 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A0A0KIR9 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 7.2e-23 Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0
BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22 Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0
BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida]) HSP 1 Score: 127.5 bits (319), Expect = 5.0e-26 Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0
BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo]) HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. NCBI nr
Match: KAA0036343.1 (MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protein SVP-like [Cucumis melo var. makuwa]) HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_011657948.1 (MADS-box protein SVP isoform X2 [Cucumis sativus]) HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus]) HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lsi01G008100 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08 Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0
BLAST of Lsi01G008100 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08 Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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