Lsi01G008100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G008100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	MADS-box protein SVP-like
Location	chr01: 6424709 .. 6425024 (+)
RNA-Seq Expression	Lsi01G008100
Synteny	Lsi01G008100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGTAAGAAGAACCCTTTTCCACAGCATACTAATATAAATTGTGTCCTTTAAATCCCTTTGTAACTTTCGGCGGCGGTGGTTTGCAGGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

mRNA sequence

ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

Coding sequence (CDS)

ATGTGCATGCAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTGAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTTGAGCCCGAGATTTTGGTCGTGGAAGATGGCCAGTCGTCGAACTCCGTCACTGAAGCTTGTGTCTCCAATTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAACTAGGGTATCTCTTCATTTCATGA

Protein sequence

MCMQSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLESSDTSLKLGYLFIS

Homology

[Close]

BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-07
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 7   ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVS 66
           +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   
Sbjct: 159 QLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNA--G 218

Query: 67  NSNGPPQDLESSDTSLKLG 72
           NS G P D ESSDTSL+LG
Sbjct: 219 NSTGAPVDSESSDTSLRLG 235

[Close]

BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-05
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 8   LMDENKRLKQQAEKM--------NAVRHLGV---EPEILV----VEDGQSSNSVTEACVS 67
           LM+EN++L+QQ  ++        N  R  GV   EPE        EDGQSS SVT  C +
Sbjct: 160 LMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPC-N 219

Query: 68  NSNGPPQDLESSDTSLKLG 72
           + + PPQD +SSDTSLKLG
Sbjct: 220 SIDPPPQDDDSSDTSLKLG 237

[Close]

BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 43.9 bits (102), Expect = 9.4e-04
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 7   ELMDENKRLKQQAE--KMNAVRHLGVEPEI-LVVEDGQSSNSVTEACVSNSNGPPQDLES 66
           +L++EN RLK+Q +  +M+ +  +   P+  +V E+GQSS SVT A  S    PP +  S
Sbjct: 178 QLIEENLRLKEQLQVSRMSRMEEMQPGPDSEIVYEEGQSSESVTNA--SYPRPPPDNDYS 237

Query: 67  SDTSLKLGYLFIS 77
           SDTSL+LG    S
Sbjct: 238 SDTSLRLGLSLFS 248

[Close]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

[Close]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 181 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 240

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 241 SDTSLKLG 248

[Close]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A0A0KIR9 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 112 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 171

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 172 SDTSLKLG 179

[Close]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.2e-23
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAEL++ENKRLK+QAEKM+ VRH GVEPEI+VVEDGQSSNSVTEACV+NSNGP QDLES
Sbjct: 156 KSAELVEENKRLKKQAEKMDGVRHFGVEPEIVVVEDGQSSNSVTEACVTNSNGPAQDLES 215

Query: 64  SDTSLKLGYLF 75
           SDTSLKLG  +
Sbjct: 216 SDTSLKLGLAY 226

[Close]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAEL++ENKRLK+QAEKM+ VR+ GVEPEILVVEDGQSSNSVTEACV+NSNGP QDLES
Sbjct: 156 KSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLES 215

Query: 64  SDTSLKLGYLF 75
           SDTSLKLG  +
Sbjct: 216 SDTSLKLGLAY 226

[Close]

BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 5.0e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVT+ACVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTDACVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

[Close]

BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

[Close]

BLAST of Lsi01G008100 vs. NCBI nr
Match: KAA0036343.1 (MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protein SVP-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 181 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 240

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 241 SDTSLKLG 248

[Close]

BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_011657948.1 (MADS-box protein SVP isoform X2 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 142 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 201

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 202 SDTSLKLG 209

[Close]

BLAST of Lsi01G008100 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 4   QSAELMDENKRLKQQAEKMNAVRHLGVEPEILVVEDGQSSNSVTEACVSNSNGPPQDLES 63
           +SAELMDENKRLKQQAEKMN VRHLGVEPEILVVEDGQSSNSVTE CVSNSNGPPQDLES
Sbjct: 156 KSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLES 215

Query: 64  SDTSLKLG 72
           SDTSLKLG
Sbjct: 216 SDTSLKLG 223

[Close]

BLAST of Lsi01G008100 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 7   ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVS 66
           +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   
Sbjct: 159 QLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNA--G 218

Query: 67  NSNGPPQDLESSDTSLKLG 72
           NS G P D ESSDTSL+LG
Sbjct: 219 NSTGAPVDSESSDTSLRLG 235

[Close]

BLAST of Lsi01G008100 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-08
Identity = 38/79 (48.10%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 7   ELMDENKRLKQQAEKM-------------NAVRHLGVEPE-ILVVEDGQSSNSVTEACVS 66
           +LMDENKRL+QQ  ++             N   H G E E   V E+GQSS S+T A   
Sbjct: 154 QLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITNA--G 213

Query: 67  NSNGPPQDLESSDTSLKLG 72
           NS G P D ESSDTSL+LG
Sbjct: 214 NSTGAPVDSESSDTSLRLG 230

The following BLAST results are available for this feature:

BLAST of Lsi01G008100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVC1	5.4e-07	48.10	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q9FUY6	5.0e-05	46.84	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
Q5K4R0	9.4e-04	42.47	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of Lsi01G008100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B1C2	3.1e-26	95.59	MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1	[more]
A0A5D3CLB3	3.1e-26	95.59	MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KIR9	3.1e-26	95.59	K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 ...	[more]
A0A6J1KUX0	7.2e-23	81.69	MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4...	[more]
A0A6J1HEK8	2.1e-22	81.69	MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE...	[more]

BLAST of Lsi01G008100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883728.1	5.0e-26	95.59	MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein S...	[more]
XP_008440538.1	6.5e-26	95.59	PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: M...	[more]
KAA0036343.1	6.5e-26	95.59	MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protei...	[more]
XP_011657948.1	6.5e-26	95.59	MADS-box protein SVP isoform X2 [Cucumis sativus]	[more]
XP_004143442.1	6.5e-26	95.59	MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box prote...	[more]

BLAST of Lsi01G008100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22540.1	3.8e-08	48.10	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	3.8e-08	48.10	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G008100.1	Lsi01G008100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009266	response to temperature stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0000900	translation repressor activity, mRNA regulatory element binding