Lsi01G004780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G004780
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmajor latex allergen Hev b 5-like
Locationchr01: 3981769 .. 3982871 (+)
RNA-Seq ExpressionLsi01G004780
SyntenyLsi01G004780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTAAAGGTAGACAAAATTAATGTCCTTTCAAAAATGTCAGCTAAATGAGGTGGCAAAATTACTAAAGATTCTTTGGACTCCTCATGCTTCCCCTCCTCTTTTCCCCAACCTCATTATATTTTATTTCAATCCATCATTTTTCATACACCTATATAAACCCTCCCCTGCTGCTTCTTATAATCAACTTGTGCTCGCTCACATTTTAGTTTTCCTCACAACTCATCTGAGTTTATCTTTTTAACTCTTTTCTTCACTTTCTTTGCTTTCTCTTCCCTTTCCCAAATGGCCACCATTGAGGTAATTCAAGTTTATATAGCTTTTGCTCATGGCTTTGGGTTAAGTTTTTTAGTATTTGGTTCAGTTCAGATCAAACCTCTTTCAAATCTTCTTCTTTTTTTGTTTTTCTGTTGACATTCTTACTCTTTATTTCTCTCTATGTAAGTGTGATCAAGTTCCAATTGATCTTGCAATGTGGGATTTTTCTCATCAATGCATTGAAATGATCTATATATTGGATCGTATATATTCTACTAGCAAAAGAAAGAACAAACTAATGGCCTTTTCTCATATGAAAATGATCATATAAAACTGTTTAAAACAATGTTTTCCTTAAATCATTGCTAAAAAGCAAGTTCCAATTTGATAATCAATTGTGTGATCTGGGTTTTGCAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

mRNA sequence

AAGTAAAGGTAGACAAAATTAATGTCCTTTCAAAAATGTCAGCTAAATGAGGTGGCAAAATTACTAAAGATTCTTTGGACTCCTCATGCTTCCCCTCCTCTTTTCCCCAACCTCATTATATTTTATTTCAATCCATCATTTTTCATACACCTATATAAACCCTCCCCTGCTGCTTCTTATAATCAACTTGTGCTCGCTCACATTTTAGTTTTCCTCACAACTCATCTGAGTTTATCTTTTTAACTCTTTTCTTCACTTTCTTTGCTTTCTCTTCCCTTTCCCAAATGGCCACCATTGAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

Coding sequence (CDS)

ATGGCCACCATTGAGGTTGAATCAGCCCCCGTAGTATTGCCAGAGCCTGAGGCAGCTCCAGTGGTTCAACTTGAGGAGAAAGTTGTAGAAGAGCCAGTAGCTGAAGCCCCTGCTGAGGAGCCAAAGGAGGAAGCTGCCCCTGAACCTGTGGAGGCAGAGGAACCAGCACCGGTCGCAACCGAACCGGTCGTCGAAACCAAGGAAGAAGTTGTGGTAAAGGAAGAGGCCAAGCCAGAGGAGGCAGAGCCTGCAGCTGCTGCTTCCGAGCCCGAAGCACCAGTCGAGGTCGAAGAGAAGAAGGAGGAAGAGGCTAAAGAGGAAACAGTAGAGCCTGTGGTGGAGAAAACAGAAGAACCTCAGGAAGCGAAAAGTGAAGATGCTGTTGAAGAGAGCTCAGAAGCTGCAGCACCAGCTGAGGAAGAGAAGCCCAAAGCAGAGGAATAA

Protein sequence

MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAEAPAEEPKEEAAPEPVEAEEPAPVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVEEKKEEEAKEETVEPVVEKTEEPQEAKSEDAVEESSEAAAPAEEEKPKAEE
Homology
BLAST of Lsi01G004780 vs. ExPASy TrEMBL
Match: A0A5D3CMF4 (Fibrous sheath CABYR-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005990 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 120/151 (79.47%), Postives = 128/151 (84.77%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEEAAPEPV-EAEEPAPV 60
           MATIEVESAPVVLPEPEAAP VQ EEKVVEEPVA E PA+E KEEAAPEPV E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVEKT- 120
            TEPVVETKE+VV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V EK  
Sbjct: 61  ETEPVVETKEDVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEEKAE 120

Query: 121 EEPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           EE +E KSE+ VEESSEAAAPAEEEKPKAEE
Sbjct: 121 EEAKEVKSEEVVEESSEAAAPAEEEKPKAEE 148

BLAST of Lsi01G004780 vs. ExPASy TrEMBL
Match: A0A1S3B0W0 (fibrous sheath CABYR-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103484659 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 117/150 (78.00%), Postives = 125/150 (83.33%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEEAAPEPV-EAEEPAPV 60
           MATIEVESAPVVLPEPEAAP VQ EEKVVEEPVA E PA+E KEEAAPEPV E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVEKTE 120
            TEPVVETKEEVV ++E+KPEEAEPAA   EPEAP E E E+KEEE KEE VE   E  E
Sbjct: 61  ETEPVVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEEKEEETKEEAVEEKAE--E 120

Query: 121 EPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           E +E KSE+ VEESSEAAAPAEEEKPKAEE
Sbjct: 121 EAKEVKSEEVVEESSEAAAPAEEEKPKAEE 145

BLAST of Lsi01G004780 vs. ExPASy TrEMBL
Match: A0A0A0KMX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511710 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32
Identity = 119/154 (77.27%), Postives = 126/154 (81.82%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEE----AAPEPVEAEEP 60
           MAT+EVES PVVLPEPEAAP VQ EEKVVEEPVA E PA+E +EE    AAPEPV   E 
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPV---EE 60

Query: 61  APVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVE 120
           APVATEP VETKEEVV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V E
Sbjct: 61  APVATEPEVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEE 120

Query: 121 KT-EEPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           KT EE +E KSEDAVEESSEAAAPAEEEKPKAEE
Sbjct: 121 KTEEETKEVKSEDAVEESSEAAAPAEEEKPKAEE 148

BLAST of Lsi01G004780 vs. ExPASy TrEMBL
Match: A0A6J1IVT4 (major latex allergen Hev b 5-like OS=Cucurbita maxima OX=3661 GN=LOC111478851 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 121/156 (77.56%), Postives = 126/156 (80.77%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAE-APAEEPK-EEAAPEPVEAEEPAPV 60
           MATIEVESAPVVLPEPEAAPVVQ EEKV EE V+E APAEEPK EEAA E VE EEPAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPVVQAEEKVAEEAVSEAAPAEEPKEEEAASEAVETEEPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEP----AAAASEPEAPVEVEEKKEEEAKEETVEPVVE 120
           ATEP VETK EVVV+E A+  EAEP    AAAASEPEA  E EEKK EE KEET EPVVE
Sbjct: 61  ATEPEVETK-EVVVEEAAEAVEAEPAAAAAAAASEPEAAAEAEEKK-EETKEETEEPVVE 120

Query: 121 K--TEEPQEAKSEDAVEESS-EAAAPAEEEKPKAEE 148
           K   EEPQE K+E+ VEESS EAAAPAEEEKPK EE
Sbjct: 121 KKEEEEPQEVKAEETVEESSEEAAAPAEEEKPKEEE 154

BLAST of Lsi01G004780 vs. ExPASy TrEMBL
Match: A0A6J1GG70 (major latex allergen Hev b 5-like OS=Cucurbita moschata OX=3662 GN=LOC111453630 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 118/160 (73.75%), Postives = 121/160 (75.62%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAE-APAEEPK-EEAAPEPVEAEEPAPV 60
           MATIEVESAPVVL EPEAAPVVQ EEKV EE V+E APAEE K EEAA E VE EEPAPV
Sbjct: 1   MATIEVESAPVVLAEPEAAPVVQAEEKVAEEAVSEAAPAEEAKEEEAASEAVETEEPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEP-AAAASEPEAPVEVEEKKEEEAKEETVEPVVEK-- 120
           A EP VETKE  VV EEA   EAEP AAAASEPEA  E EEKK EE KEET EPVVEK  
Sbjct: 61  AAEPEVETKE--VVVEEA--VEAEPAAAAASEPEAAAEAEEKK-EETKEETEEPVVEKKE 120

Query: 121 -TEEPQEAKSEDAVEESSE-------AAAPAEEEKPKAEE 148
             EEPQE K+E+ VEESSE       AAAPAEEEKPK EE
Sbjct: 121 EEEEPQEVKAEETVEESSEAAAAAAAAAAPAEEEKPKEEE 155

BLAST of Lsi01G004780 vs. NCBI nr
Match: XP_038880819.1 (probable serine/threonine-protein kinase kinX [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-39
Identity = 130/150 (86.67%), Postives = 132/150 (88.00%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAEAPAEEPKEEAAPEPVEAEEPAPVAT 60
           MATIEVESAPVVLPEPEAAPVVQ EEKVVEEPVAEAPAEEPKEEAAPE V+AEEPAPVAT
Sbjct: 1   MATIEVESAPVVLPEPEAAPVVQTEEKVVEEPVAEAPAEEPKEEAAPEAVKAEEPAPVAT 60

Query: 61  EPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVEEKKEEEAKEETVEPVVEKTEE-- 120
           EP VETKE  VV+EE KPEEAEPA  ASEPEAPVE EE KEEEAKEETVE   EKTEE  
Sbjct: 61  EPDVETKE--VVEEETKPEEAEPAVGASEPEAPVEAEE-KEEEAKEETVE---EKTEEEK 120

Query: 121 PQEAKSEDAV-EESSEAAAPAEEEKPKAEE 148
           PQE KSED V EESSEAAAPAEEEKPKAEE
Sbjct: 121 PQEVKSEDVVEEESSEAAAPAEEEKPKAEE 144

BLAST of Lsi01G004780 vs. NCBI nr
Match: TYK13001.1 (fibrous sheath CABYR-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-34
Identity = 120/151 (79.47%), Postives = 128/151 (84.77%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEEAAPEPV-EAEEPAPV 60
           MATIEVESAPVVLPEPEAAP VQ EEKVVEEPVA E PA+E KEEAAPEPV E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVEKT- 120
            TEPVVETKE+VV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V EK  
Sbjct: 61  ETEPVVETKEDVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEEKAE 120

Query: 121 EEPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           EE +E KSE+ VEESSEAAAPAEEEKPKAEE
Sbjct: 121 EEAKEVKSEEVVEESSEAAAPAEEEKPKAEE 148

BLAST of Lsi01G004780 vs. NCBI nr
Match: XP_008440071.1 (PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-32
Identity = 117/150 (78.00%), Postives = 125/150 (83.33%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEEAAPEPV-EAEEPAPV 60
           MATIEVESAPVVLPEPEAAP VQ EEKVVEEPVA E PA+E KEEAAPEPV E E+PAPV
Sbjct: 1   MATIEVESAPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQKEEAAPEPVEEVEKPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVEKTE 120
            TEPVVETKEEVV ++E+KPEEAEPAA   EPEAP E E E+KEEE KEE VE   E  E
Sbjct: 61  ETEPVVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEEKEEETKEEAVEEKAE--E 120

Query: 121 EPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           E +E KSE+ VEESSEAAAPAEEEKPKAEE
Sbjct: 121 EAKEVKSEEVVEESSEAAAPAEEEKPKAEE 145

BLAST of Lsi01G004780 vs. NCBI nr
Match: XP_004134796.1 (fibrous sheath CABYR-binding protein [Cucumis sativus] >KGN49056.1 hypothetical protein Csa_004121 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-32
Identity = 119/154 (77.27%), Postives = 126/154 (81.82%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVA-EAPAEEPKEE----AAPEPVEAEEP 60
           MAT+EVES PVVLPEPEAAP VQ EEKVVEEPVA E PA+E +EE    AAPEPV   E 
Sbjct: 1   MATVEVESVPVVLPEPEAAPAVQPEEKVVEEPVAEETPAQEQEEEAAAPAAPEPV---EE 60

Query: 61  APVATEPVVETKEEVVVKEEAKPEEAEPAAAASEPEAPVEVE-EKKEEEAKEETVEPVVE 120
           APVATEP VETKEEVV ++E+KPEEAEPAA   EPEAP E E EKKEEE KEETVE V E
Sbjct: 61  APVATEPEVETKEEVVEEKESKPEEAEPAA---EPEAPAEAEAEKKEEETKEETVEAVEE 120

Query: 121 KT-EEPQEAKSEDAVEESSEAAAPAEEEKPKAEE 148
           KT EE +E KSEDAVEESSEAAAPAEEEKPKAEE
Sbjct: 121 KTEEETKEVKSEDAVEESSEAAAPAEEEKPKAEE 148

BLAST of Lsi01G004780 vs. NCBI nr
Match: XP_023544677.1 (uncharacterized protein LOC111804190 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544678.1 uncharacterized protein LOC111804190 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-30
Identity = 122/160 (76.25%), Postives = 126/160 (78.75%), Query Frame = 0

Query: 1   MATIEVESAPVVLPEPEAAPVVQLEEKVVEEPVAE-APAEEPK-EEAAPEPVEAEEPAPV 60
           MATIEVESAPVVL EPEAAPVVQ EEKVVEEPV+E APAEEPK EEAA E VE EEPAPV
Sbjct: 1   MATIEVESAPVVLAEPEAAPVVQAEEKVVEEPVSEAAPAEEPKEEEAASEAVETEEPAPV 60

Query: 61  ATEPVVETKEEVVVKEEAKPEEAE---PAAAASEPEAPVEVEEKKEEEAKEETVEPVVEK 120
           A EP VETK EVVV+E A+  EAE   PAAAASEPEAP   EEKK EE KEET EPVVEK
Sbjct: 61  AAEPEVETK-EVVVEEAAEAVEAEPAAPAAAASEPEAPAGAEEKK-EETKEETEEPVVEK 120

Query: 121 ---TEEPQEAKSEDAVEESSEAA-----APAEEEKPKAEE 148
               EEPQE K+ED VEESSEAA     APAEEEKPK EE
Sbjct: 121 KEEEEEPQEVKAEDTVEESSEAAAAAAPAPAEEEKPKEEE 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CMF41.6e-3479.47Fibrous sheath CABYR-binding protein-like OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3B0W08.7e-3378.00fibrous sheath CABYR-binding protein-like OS=Cucumis melo OX=3656 GN=LOC10348465... [more]
A0A0A0KMX74.3e-3277.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511710 PE=4 SV=1[more]
A0A6J1IVT41.4e-3077.56major latex allergen Hev b 5-like OS=Cucurbita maxima OX=3661 GN=LOC111478851 PE... [more]
A0A6J1GG704.6e-2673.75major latex allergen Hev b 5-like OS=Cucurbita moschata OX=3662 GN=LOC111453630 ... [more]
Match NameE-valueIdentityDescription
XP_038880819.12.0e-3986.67probable serine/threonine-protein kinase kinX [Benincasa hispida][more]
TYK13001.13.3e-3479.47fibrous sheath CABYR-binding protein-like [Cucumis melo var. makuwa][more]
XP_008440071.11.8e-3278.00PREDICTED: fibrous sheath CABYR-binding protein-like [Cucumis melo][more]
XP_004134796.19.0e-3277.27fibrous sheath CABYR-binding protein [Cucumis sativus] >KGN49056.1 hypothetical ... [more]
XP_023544677.12.9e-3076.25uncharacterized protein LOC111804190 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004780.1Lsi01G004780.1mRNA