Lsi01G004720 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGAACGAACGGTCAAGGAAAGGGAGAGGATTCATATTCGAGGACGAAGAATTGAACAAAAGTATATAAATCAATTTCAGAAAGAGAAAGAAAACTATTTTAAATTCGAAGCTCCATTCAAAGAAAAAAAATCAGCTGCTGGTCTTCGTCCCTTTCTTCCTTTGAAGGCGAAGACAGATTATCGGCCATCCGAGACTGATCCGTTTCCCGGTCAAATCTGAGAATGAACACCAACAACAAACTCGTCTTCATCAGCTAAAACGGTTCGTTTTTCCTCCCCCATCCTCAATGGAATTTTTAGCCTATAATGTTTCCTTATTTCCTCGGCTATTGATTGATTTTGTGTCTTCTTTTTCCGTTTCCCCCCCTTGGATTCAAGTATTCAAAGCTAGCAGGAACTGGGTTGGGTGAATCGTTGATTTTCTTTGATATTGATTTGATTCCGAGTATGAATATCTGATGGTGGCCTGTGGGCAATCGTTCATGAATCGTATTAGATCTTGTTGTTTGCGTGATTTATTGCATTCCACCGATAAACATGGCTACCCCAATCAAGGGAATGGGTTATGCAATCTGGGATCTGCTTTTTGTGTTCTACATTTTGGGTTGTTAGTGGCCTAACGCCTTAGATGGATTCTATGGCATTTTGACATAGGATTACTGTTAATTAGAGCCATATTAGGATATAGGATGAAAATTGTTGGGGTTTGTATATTATCAATTGTATCAGAATCTGAGGGAGCCCGGTGAGCCAATATATTACAAGTAGTAGAACATTTTTAGCTTGTTTTGTTCAGGCACTTGGTTTAGTATTTGATGATTATATCAAAACCTTCTACTTCAGGATCTTTTGGTGAATATTAACGATATCTTAGGCGACGTGGTTGAGGATGGCTGATGGAATATCAAGTTTCTGGGGTCCTGTCACATCTACAACAGAGTGCTGTGAGAAGAATTATGCTTATTCTTCTTATATTGCTGAGTTTTATAACACAGTGTCAAACATCCCAACCATTCTTTTGGCTCTGATCGGTCTTACAAATGCCTTGCGACAGCATTTCGAGAAGAGATTTAGTGTACTTCACATATCCAATATGATACTGGCCATTGGAAGCATGTTCTACCATGCCACATTGCAAAAAGTGTAAGTTTCAAATAGAAACACATTCATATTGTGATTTGATCTACTACTTGCATAATTTAGGTGGTCTAGTTGCAGATTTATTCATTTCATGTGGTTGGTGGAATTTTGGATATGTTTGTGAAATTTTTGGTCTTGAATGTTTGTTTACAACAATCAATGATAAACACTTTGTTTTCTAACCAGGCAACAGCAAGGTGATGAAACACCAATGATCTGGGAGATGCTTCTTTACATGTACATTCTCTATTCACCAGATTGGCATTACCGAAGTACGATGCCAACGTTCCTCTTCCTCTATGGAGCCATGTTTGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGATTCTCTGTCTCCTCTGCATACCTCGGATGTACAAATATTATATATACACAGAAGATGCCTCAGCTAAGCGACTAGCGAGGCTGTACTCATTGACTCTTCTCTTAGGCATTTTCTGTTGGGTTACCGATCGGGGTTTCTGCGAGAAGATATCACATTGGATCATCAATCCTCAAGGACATGCCCTGTGGCATGTTTTCATGGGTTTGAGTTCCTATTATGCAAACGCATTCTTAATGTTTTGCCGGGCGCAGCAAAGAGGATGGGCCCCTAAAGTACTTCATTTAATGGGAGTTCTCCCCTACGTGCAGATTGAGAAACCAAAAACCCAGTAAGAAGACAGACAAATTTTGACCTATGTTAAGTGTTTCCATGGAGGTAGAAGAGAGAGAGAAGAAAAAAAAAAAAAAGCAATCTTTTTGGCCAAGTTGTTTCTTTTCCTTCTTTTCACCGAGGAATGAATAGAAACTTAGATTTTTGTAGTAAAAATAACAGCACTTATGTATTTTTGTTGATTGACATCGGGCATGATTCTTGAAGATTTATCGTTAAAGACTACGACTTGGCATTTTTAACTCTTTCACAGACTGAAGCGACTAAGCAATATCTGTACAATTCTTCTAATTTCGTTTGTTTTGTTTTGTTTTCTTATTTCCAGATATATCGATTTAACCCTTGATTTGTACTCTTCGATTGTGTTGAAAGCGTTGATTATACAATAATTAAACTTTTTCCGTTTTAA CGAACGAACGGTCAAGGAAAGGGAGAGGATTCATATTCGAGGACGAAGAATTGAACAAAAGTATATAAATCAATTTCAGAAAGAGAAAGAAAACTATTTTAAATTCGAAGCTCCATTCAAAGAAAAAAAATCAGCTGCTGGTCTTCGTCCCTTTCTTCCTTTGAAGGCGAAGACAGATTATCGGCCATCCGAGACTGATCCGTTTCCCGGTCAAATCTGAGAATGAACACCAACAACAAACTCGTCTTCATCAGCTAAAACGGATCTTTTGGTGAATATTAACGATATCTTAGGCGACGTGGTTGAGGATGGCTGATGGAATATCAAGTTTCTGGGGTCCTGTCACATCTACAACAGAGTGCTGTGAGAAGAATTATGCTTATTCTTCTTATATTGCTGAGTTTTATAACACAGTGTCAAACATCCCAACCATTCTTTTGGCTCTGATCGGTCTTACAAATGCCTTGCGACAGCATTTCGAGAAGAGATTTAGTGTACTTCACATATCCAATATGATACTGGCCATTGGAAGCATGTTCTACCATGCCACATTGCAAAAAGTGCAACAGCAAGGTGATGAAACACCAATGATCTGGGAGATGCTTCTTTACATGTACATTCTCTATTCACCAGATTGGCATTACCGAAGTACGATGCCAACGTTCCTCTTCCTCTATGGAGCCATGTTTGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGATTCTCTGTCTCCTCTGCATACCTCGGATGTACAAATATTATATATACACAGAAGATGCCTCAGCTAAGCGACTAGCGAGGCTGTACTCATTGACTCTTCTCTTAGGCATTTTCTGTTGGGTTACCGATCGGGGTTTCTGCGAGAAGATATCACATTGGATCATCAATCCTCAAGGACATGCCCTGTGGCATGTTTTCATGGGTTTGAGTTCCTATTATGCAAACGCATTCTTAATGTTTTGCCGGGCGCAGCAAAGAGGATGGGCCCCTAAAGTACTTCATTTAATGGGAGTTCTCCCCTACGTGCAGATTGAGAAACCAAAAACCCAGTAAGAAGACAGACAAATTTTGACCTATGTTAAGTGTTTCCATGGAGGTAGAAGAGAGAGAGAAGAAAAAAAAAAAAAAGCAATCTTTTTGGCCAAGTTGTTTCTTTTCCTTCTTTTCACCGAGGAATGAATAGAAACTTAGATTTTTGTAGTAAAAATAACAGCACTTATGTATTTTTGTTGATTGACATCGGGCATGATTCTTGAAGATTTATCGTTAAAGACTACGACTTGGCATTTTTAACTCTTTCACAGACTGAAGCGACTAAGCAATATCTGTACAATTCTTCTAATTTCGTTTGTTTTGTTTTGTTTTCTTATTTCCAGATATATCGATTTAACCCTTGATTTGTACTCTTCGATTGTGTTGAAAGCGTTGATTATACAATAATTAAACTTTTTCCGTTTTAA ATGGCTGATGGAATATCAAGTTTCTGGGGTCCTGTCACATCTACAACAGAGTGCTGTGAGAAGAATTATGCTTATTCTTCTTATATTGCTGAGTTTTATAACACAGTGTCAAACATCCCAACCATTCTTTTGGCTCTGATCGGTCTTACAAATGCCTTGCGACAGCATTTCGAGAAGAGATTTAGTGTACTTCACATATCCAATATGATACTGGCCATTGGAAGCATGTTCTACCATGCCACATTGCAAAAAGTGCAACAGCAAGGTGATGAAACACCAATGATCTGGGAGATGCTTCTTTACATGTACATTCTCTATTCACCAGATTGGCATTACCGAAGTACGATGCCAACGTTCCTCTTCCTCTATGGAGCCATGTTTGCCGTGGCTCACTCGATTCTTCGTTATGACATTGGTTTCAAGGTGCACTATGTGATTCTCTGTCTCCTCTGCATACCTCGGATGTACAAATATTATATATACACAGAAGATGCCTCAGCTAAGCGACTAGCGAGGCTGTACTCATTGACTCTTCTCTTAGGCATTTTCTGTTGGGTTACCGATCGGGGTTTCTGCGAGAAGATATCACATTGGATCATCAATCCTCAAGGACATGCCCTGTGGCATGTTTTCATGGGTTTGAGTTCCTATTATGCAAACGCATTCTTAATGTTTTGCCGGGCGCAGCAAAGAGGATGGGCCCCTAAAGTACTTCATTTAATGGGAGTTCTCCCCTACGTGCAGATTGAGAAACCAAAAACCCAGTAA MADGISSFWGPVTSTTECCEKNYAYSSYIAEFYNTVSNIPTILLALIGLTNALRQHFEKRFSVLHISNMILAIGSMFYHATLQKVQQQGDETPMIWEMLLYMYILYSPDWHYRSTMPTFLFLYGAMFAVAHSILRYDIGFKVHYVILCLLCIPRMYKYYIYTEDASAKRLARLYSLTLLLGIFCWVTDRGFCEKISHWIINPQGHALWHVFMGLSSYYANAFLMFCRAQQRGWAPKVLHLMGVLPYVQIEKPKTQ Homology
BLAST of Lsi01G004720 vs. ExPASy Swiss-Prot
Match: Q94IB9 (Alkaline ceramidase OS=Arabidopsis thaliana OX=3702 GN=ACER PE=2 SV=1) HSP 1 Score: 440.7 bits (1132), Expect = 1.2e-122 Identity = 204/255 (80.00%), Postives = 224/255 (87.84%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy Swiss-Prot
Match: Q9D099 (Alkaline ceramidase 3 OS=Mus musculus OX=10090 GN=Acer3 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27 Identity = 81/259 (31.27%), Postives = 126/259 (48.65%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy Swiss-Prot
Match: Q9NUN7 (Alkaline ceramidase 3 OS=Homo sapiens OX=9606 GN=ACER3 PE=1 SV=3) HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26 Identity = 81/259 (31.27%), Postives = 127/259 (49.03%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy Swiss-Prot
Match: Q6TMJ1 (Putative alkaline ceramidase dcd3A OS=Dictyostelium discoideum OX=44689 GN=dcd3A PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-19 Identity = 74/273 (27.11%), Postives = 122/273 (44.69%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy Swiss-Prot
Match: Q9VIP7 (Alkaline ceramidase OS=Drosophila melanogaster OX=7227 GN=bwa PE=2 SV=2) HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16 Identity = 67/216 (31.02%), Postives = 109/216 (50.46%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy TrEMBL
Match: A0A1S3B0Z4 (alkaline ceramidase 3 OS=Cucumis melo OX=3656 GN=LOC103484652 PE=3 SV=1) HSP 1 Score: 516.9 bits (1330), Expect = 4.7e-143 Identity = 246/255 (96.47%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy TrEMBL
Match: A0A6J1KSV2 (alkaline ceramidase OS=Cucurbita maxima OX=3661 GN=LOC111497288 PE=3 SV=1) HSP 1 Score: 505.8 bits (1301), Expect = 1.1e-139 Identity = 239/255 (93.73%), Postives = 247/255 (96.86%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy TrEMBL
Match: A0A6J1EME1 (alkaline ceramidase OS=Cucurbita moschata OX=3662 GN=LOC111433883 PE=3 SV=1) HSP 1 Score: 501.1 bits (1289), Expect = 2.7e-138 Identity = 238/255 (93.33%), Postives = 245/255 (96.08%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy TrEMBL
Match: A0A6J1BUA9 (alkaline ceramidase OS=Momordica charantia OX=3673 GN=LOC111005428 PE=3 SV=1) HSP 1 Score: 500.0 bits (1286), Expect = 6.0e-138 Identity = 234/255 (91.76%), Postives = 246/255 (96.47%), Query Frame = 0
BLAST of Lsi01G004720 vs. ExPASy TrEMBL
Match: A0A5D3CM37 (Alkaline ceramidase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006050 PE=3 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131 Identity = 236/286 (82.52%), Postives = 245/286 (85.66%), Query Frame = 0
BLAST of Lsi01G004720 vs. NCBI nr
Match: XP_008440061.1 (PREDICTED: alkaline ceramidase 3 [Cucumis melo] >XP_008440062.1 PREDICTED: alkaline ceramidase 3 [Cucumis melo]) HSP 1 Score: 516.9 bits (1330), Expect = 9.7e-143 Identity = 246/255 (96.47%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of Lsi01G004720 vs. NCBI nr
Match: XP_004134791.1 (alkaline ceramidase [Cucumis sativus] >XP_031742854.1 alkaline ceramidase [Cucumis sativus] >KAE8647646.1 hypothetical protein Csa_003199 [Cucumis sativus]) HSP 1 Score: 514.6 bits (1324), Expect = 4.8e-142 Identity = 245/255 (96.08%), Postives = 249/255 (97.65%), Query Frame = 0
BLAST of Lsi01G004720 vs. NCBI nr
Match: XP_038882449.1 (alkaline ceramidase [Benincasa hispida] >XP_038882450.1 alkaline ceramidase [Benincasa hispida]) HSP 1 Score: 514.6 bits (1324), Expect = 4.8e-142 Identity = 246/255 (96.47%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of Lsi01G004720 vs. NCBI nr
Match: XP_023003815.1 (alkaline ceramidase [Cucurbita maxima] >XP_023003816.1 alkaline ceramidase [Cucurbita maxima] >XP_023003817.1 alkaline ceramidase [Cucurbita maxima] >XP_023003819.1 alkaline ceramidase [Cucurbita maxima] >XP_023003820.1 alkaline ceramidase [Cucurbita maxima]) HSP 1 Score: 505.8 bits (1301), Expect = 2.2e-139 Identity = 239/255 (93.73%), Postives = 247/255 (96.86%), Query Frame = 0
BLAST of Lsi01G004720 vs. NCBI nr
Match: KAG7026660.1 (Alkaline ceramidase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138 Identity = 239/255 (93.73%), Postives = 246/255 (96.47%), Query Frame = 0
BLAST of Lsi01G004720 vs. TAIR 10
Match: AT4G22330.1 (Alkaline phytoceramidase (aPHC) ) HSP 1 Score: 440.7 bits (1132), Expect = 8.3e-124 Identity = 204/255 (80.00%), Postives = 224/255 (87.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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