Lsi01G004540 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTAAAAATAGATTCTTAGGAGCATACAGAAAGAGAATGCAATGCAATGATCTTCATTCAGATGTTTTTCCTGGTTTCTTTTGGACAAAACCTGTCAGCATGGGAAACCAATAGTTAATAGATTCTAATTTAGTAGAGTAAGAAGAAAATTGAAGTTTATTGTTAATCAAGTTTCATATCTTGTTCTAACAAATAAGCCTTCTAATTGTGGTCAATGTCGTGGCTTGGGCAGCATTGCGCATACTAGAGGTTAGTTCTGTACACTTGAGAGTTGATGAATGCATCCCACTGTGAAAAACACTCATAAGCCAGCCAATCATTGATTTCAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAGTAAGAAAACTAGTCTATTTATCTGGTATTTTCTAAACACGGCATTATGATCAGTTGCTTGCTACCCTAACTGAGATTCATCGTTTTCAGATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGACAAAATTCTGCTCTGCATTTTCTTCACCTTTTGCATTTAAACAGGAGAGGATACATAGATCCAGTGTGTGTGATATGATATGAGAGTAACAAAGAAGTAGCAAACCCAGTGATGGTATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCGAGCTGCAAAATAATTTTATCGCAATTTAAATTACTCAAAGGTTGCAAAGCTTTCAAAGTACTCACCTGTTGCAGAAGATTAACGACACCTCACCTGAAGTTCAGAAAGTTGTGAATCAGCAGCTCCAGTTTGAAACAATGTCTTGTGGTTTGCACATCCATAAATAATACGGAAGACTCAGTAATTTGCTTAAAAGAAATCAGAGGAAACAATAAGATTTTGGGATGTGTAAGAACCAAAATATGGGATGTGAATGAGAATGCAATGCATTTCAGAACCAGACCTCAATGAGGCAAAGAGACAGTCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCTAACTTAACTTAGGGAAATAATTATAATCTGCATGATTAAAAGTGATATTGTTGGGGAATCAGTGGCTGGCTAACGTAGACACCAG ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGACAAAATTCTGCTCTGCATTTTCTTCACCTTTTGCATTTAAACAGGAGAGGATACATAGATCCAGTGTGTGTGATATGATATGAGAGTAACAAAGAAGTAGCAAACCCAGTGATGGTATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCGAGCTGCAAAATAATTTTATCGCAATTTAAATTACTCAAAGGTTGCAAAGCTTTCAAAGTACTCACCTGTTGCAGAAGATTAACGACACCTCACCTGAAGTTCAGAAAGTTGTGAATCAGCAGCTCCAGTTTGAAACAATGTCTTGTGGTTTGCACATCCATAAATAATACGGAAGACTCAGTAATTTGCTTAAAAGAAATCAGAGGAAACAATAAGATTTTGGGATGTGTAAGAACCAAAATATGGGATGTGAATGAGAATGCAATGCATTTCAGAACCAGACCTCAATGAGGCAAAGAGACAGTCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCTAACTTAACTTAGGGAAATAATTATAATCTGCATGATTAAAAGTGATATTGTTGGGGAATCAGTGGCTGGCTAACGTAGACACCAG ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGA MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK Homology
BLAST of Lsi01G004540 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 8.3e-31 Identity = 81/154 (52.60%), Postives = 95/154 (61.69%), Query Frame = 0
BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 5.6e-38 Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0
BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 7.3e-38 Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0
BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 7.3e-38 Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0
BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 8.9e-36 Identity = 96/155 (61.94%), Postives = 101/155 (65.16%), Query Frame = 0
BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 4.9e-34 Identity = 94/155 (60.65%), Postives = 100/155 (64.52%), Query Frame = 0
BLAST of Lsi01G004540 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46 Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0
BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_038881665.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X2 [Benincasa hispida]) HSP 1 Score: 172.9 bits (437), Expect = 2.1e-39 Identity = 102/155 (65.81%), Postives = 105/155 (67.74%), Query Frame = 0
BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]) HSP 1 Score: 172.9 bits (437), Expect = 2.1e-39 Identity = 102/155 (65.81%), Postives = 105/155 (67.74%), Query Frame = 0
BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]) HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37 Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0
BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37 Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0
BLAST of Lsi01G004540 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein ) HSP 1 Score: 134.8 bits (338), Expect = 5.9e-32 Identity = 81/154 (52.60%), Postives = 95/154 (61.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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