Lsi01G004540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Location	chr01: 3783958 .. 3785448 (+)
RNA-Seq Expression	Lsi01G004540
Synteny	Lsi01G004540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTAAAAATAGATTCTTAGGAGCATACAGAAAGAGAATGCAATGCAATGATCTTCATTCAGATGTTTTTCCTGGTTTCTTTTGGACAAAACCTGTCAGCATGGGAAACCAATAGTTAATAGATTCTAATTTAGTAGAGTAAGAAGAAAATTGAAGTTTATTGTTAATCAAGTTTCATATCTTGTTCTAACAAATAAGCCTTCTAATTGTGGTCAATGTCGTGGCTTGGGCAGCATTGCGCATACTAGAGGTTAGTTCTGTACACTTGAGAGTTGATGAATGCATCCCACTGTGAAAAACACTCATAAGCCAGCCAATCATTGATTTCAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAGTAAGAAAACTAGTCTATTTATCTGGTATTTTCTAAACACGGCATTATGATCAGTTGCTTGCTACCCTAACTGAGATTCATCGTTTTCAGATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGACAAAATTCTGCTCTGCATTTTCTTCACCTTTTGCATTTAAACAGGAGAGGATACATAGATCCAGTGTGTGTGATATGATATGAGAGTAACAAAGAAGTAGCAAACCCAGTGATGGTATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCGAGCTGCAAAATAATTTTATCGCAATTTAAATTACTCAAAGGTTGCAAAGCTTTCAAAGTACTCACCTGTTGCAGAAGATTAACGACACCTCACCTGAAGTTCAGAAAGTTGTGAATCAGCAGCTCCAGTTTGAAACAATGTCTTGTGGTTTGCACATCCATAAATAATACGGAAGACTCAGTAATTTGCTTAAAAGAAATCAGAGGAAACAATAAGATTTTGGGATGTGTAAGAACCAAAATATGGGATGTGAATGAGAATGCAATGCATTTCAGAACCAGACCTCAATGAGGCAAAGAGACAGTCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCTAACTTAACTTAGGGAAATAATTATAATCTGCATGATTAAAAGTGATATTGTTGGGGAATCAGTGGCTGGCTAACGTAGACACCAG

mRNA sequence

ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGACAAAATTCTGCTCTGCATTTTCTTCACCTTTTGCATTTAAACAGGAGAGGATACATAGATCCAGTGTGTGTGATATGATATGAGAGTAACAAAGAAGTAGCAAACCCAGTGATGGTATGGTAATATACGGAAACATTCATTCTGAATTCTTCTTGCGAGCTGCAAAATAATTTTATCGCAATTTAAATTACTCAAAGGTTGCAAAGCTTTCAAAGTACTCACCTGTTGCAGAAGATTAACGACACCTCACCTGAAGTTCAGAAAGTTGTGAATCAGCAGCTCCAGTTTGAAACAATGTCTTGTGGTTTGCACATCCATAAATAATACGGAAGACTCAGTAATTTGCTTAAAAGAAATCAGAGGAAACAATAAGATTTTGGGATGTGTAAGAACCAAAATATGGGATGTGAATGAGAATGCAATGCATTTCAGAACCAGACCTCAATGAGGCAAAGAGACAGTCAATGAATTCAGAAATGCTTTGGCTCACAGCAGAAGCTAATGCAAGAGACTTTTTGCTAACTTAACTTAGGGAAATAATTATAATCTGCATGATTAAAAGTGATATTGTTGGGGAATCAGTGGCTGGCTAACGTAGACACCAG

Coding sequence (CDS)

ATGCATAATTTCTTCACATATGTTGCTGTTAGGATAGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTGCTTTTTACTCTTTTTAATTGCTCTGCCATGTTGTGTGGGTTTCCATTGGTATTGATTCTTGTTCTGGTAGAGCAGAGCTATAATCCAGAGGCGTACCAGGAGTTAATGGAGTTTCTTGACACACATTCACTGAATGATGGGGACAAATTCCTGGCCAGTTTGATGCGGGAATCGTCAAGGCATAAATCTCTTGGTAAAACCCAAATCTACTCTGTCTTTAGTTCGGCCCAAATCTACGAGTTCATTAGGGACCAAAAATGCGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCGATTAGCTTTTAAAATGGTTAGTGAATCCAACACAAGACTTATGAGGGAATACGTGACGGAGACAAGTCCATCAGATACCGAGAAGTGA

Protein sequence

MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELMEFLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDFEWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK

Homology

[Close]

BLAST of Lsi01G004540 vs. ExPASy Swiss-Prot
Match: Q94AU9 (Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.3e-31
Identity = 81/154 (52.60%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +H+FFTYVAVRIV+AQLE                              SYNPEAY EL E
Sbjct: 65  LHDFFTYVAVRIVSAQLE------------------------------SYNPEAYMELRE 124

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLDT+S++DGDKF A+LMR SSRH +L          + +I E       VRSAYCKNDF
Sbjct: 125 FLDTNSVSDGDKFCATLMRRSSRHMNL----------ALRILE-------VRSAYCKNDF 171

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE 155
           EWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Sbjct: 185 EWDNMKRLAFKNVDDSNTRLMREYVLETSHVETD 171

[Close]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A0A0KMZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.6e-38
Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAY ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYLELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHK+L          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKAL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMVSESNTR+MREY+TETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A5D3CNU4 (Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006230 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.3e-38
Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAY ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYLELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A1S3B054 (uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.3e-38
Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAY ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYLELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A6J1BTL5 (chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005638 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.9e-36
Identity = 96/155 (61.94%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIV AQLE                              SYNPEA+ ELME
Sbjct: 68  LHNFFTYVAVRIVIAQLE------------------------------SYNPEAHVELME 127

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 128 FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 175

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLA KM SESNTRLMREYVTETSPS+TEK
Sbjct: 188 EWDNLKRLASKMASESNTRLMREYVTETSPSETEK 175

[Close]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL
Match: A0A6J1KRH1 (chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496972 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.9e-34
Identity = 94/155 (60.65%), Postives = 100/155 (64.52%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEA+ ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAHTELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFL++LMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLSNLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 172

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Sbjct: 186 EWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 172

[Close]

BLAST of Lsi01G004540 vs. NCBI nr
Match: KAG7026647.1 (Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46
Identity = 117/155 (75.48%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLEVALQLL   FNCSAML    LVLILVLVEQSYNPEA+ ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLEVALQLLL-CFNCSAML----LVLILVLVEQSYNPEAHAELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFL++LMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLSNLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 185

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLA KMV ESNTRLMREYVTETSP D EK
Sbjct: 186 EWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK 197

[Close]

BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_038881665.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-39
Identity = 102/155 (65.81%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAYQELME
Sbjct: 37  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYQELME 96

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 97  FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 144

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
Sbjct: 157 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 144

[Close]

BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_038881664.1 (chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 172.9 bits (437), Expect = 2.1e-39
Identity = 102/155 (65.81%), Postives = 105/155 (67.74%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAYQELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYQELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_004134778.1 (chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAY ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYLELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHK+L          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKAL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMVSESNTR+MREY+TETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVSESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. NCBI nr
Match: XP_008440039.1 (PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chaperonin-like RBCX protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 98/155 (63.23%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +HNFFTYVAVRIVTAQLE                              SYNPEAY ELME
Sbjct: 66  LHNFFTYVAVRIVTAQLE------------------------------SYNPEAYLELME 125

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLD HSLNDGDKFLASLMRESSRHKSL          + +I E       VRSAYCKNDF
Sbjct: 126 FLDRHSLNDGDKFLASLMRESSRHKSL----------ALRILE-------VRSAYCKNDF 173

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTEK 156
           EWDNLKRLAFKMV ESNTR+MREY+TETSPSDTEK
Sbjct: 186 EWDNLKRLAFKMVGESNTRIMREYLTETSPSDTEK 173

[Close]

BLAST of Lsi01G004540 vs. TAIR 10
Match: AT4G04330.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-32
Identity = 81/154 (52.60%), Postives = 95/154 (61.69%), Query Frame = 0


Query: 1   MHNFFTYVAVRIVTAQLEVALQLLFTLFNCSAMLCGFPLVLILVLVEQSYNPEAYQELME 60
           +H+FFTYVAVRIV+AQLE                              SYNPEAY EL E
Sbjct: 65  LHDFFTYVAVRIVSAQLE------------------------------SYNPEAYMELRE 124

Query: 61  FLDTHSLNDGDKFLASLMRESSRHKSLGKTQIYSVFSSAQIYEFIRDQKCVRSAYCKNDF 120
           FLDT+S++DGDKF A+LMR SSRH +L          + +I E       VRSAYCKNDF
Sbjct: 125 FLDTNSVSDGDKFCATLMRRSSRHMNL----------ALRILE-------VRSAYCKNDF 171

Query: 121 EWDNLKRLAFKMVSESNTRLMREYVTETSPSDTE 155
           EWDN+KRLAFK V +SNTRLMREYV ETS  +T+
Sbjct: 185 EWDNMKRLAFKNVDDSNTRLMREYVLETSHVETD 171

The following BLAST results are available for this feature:

BLAST of Lsi01G004540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AU9	8.3e-31	52.60	Chaperonin-like RBCX protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi01G004540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMZ4	5.6e-38	63.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513450 PE=4 SV=1	[more]
A0A5D3CNU4	7.3e-38	63.23	Chaperonin-like RBCX protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B054	7.3e-38	63.23	uncharacterized protein LOC103484635 OS=Cucumis melo OX=3656 GN=LOC103484635 PE=...	[more]
A0A6J1BTL5	8.9e-36	61.94	chaperonin-like RBCX protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KRH1	4.9e-34	60.65	chaperonin-like RBCX protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Lsi01G004540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026647.1	5.2e-46	75.48	Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_038881665.1	2.1e-39	65.81	chaperonin-like RBCX protein 1, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_038881664.1	2.1e-39	65.81	chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_004134778.1	1.2e-37	63.23	chaperonin-like RBCX protein 1, chloroplastic [Cucumis sativus]	[more]
XP_008440039.1	1.5e-37	63.23	PREDICTED: uncharacterized protein LOC103484635 [Cucumis melo] >TYK13022.1 chape...	[more]

BLAST of Lsi01G004540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04330.1	5.9e-32	52.60	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 1..155 e-value: 4.0E-34 score: 119.5
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 1..153
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 48..148 e-value: 1.6E-10 score: 41.2
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..154
None	No IPR available	PANTHER	PTHR33791:SF12	CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004540.1	Lsi01G004540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006950	response to stress
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone