Lsi01G004200 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEII Homology
BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36 Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36 Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31 Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 5.0e-30 Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A438EDR4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08 Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 0
BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa]) HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35 Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0
BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima]) HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31 Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 141.4 bits (355), Expect = 4.6e-30 Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of Lsi01G004200 vs. NCBI nr
Match: KGN49118.1 (hypothetical protein Csa_002843 [Cucumis sativus]) HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29 Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 0
BLAST of Lsi01G004200 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29 Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of Lsi01G004200 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 8.5e-06 Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 0
BLAST of Lsi01G004200 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 44.7 bits (104), Expect = 5.5e-05 Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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