Lsi01G004200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G004200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
Location	chr01: 3563507 .. 3563827 (-)
RNA-Seq Expression	Lsi01G004200
Synteny	Lsi01G004200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

mRNA sequence

ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

Coding sequence (CDS)

ATGGAAGGCGGCGACCGGAGGACTCCGCCGTGGAAGAACCACCATCAGAGAAAGCCTGAAGGTAGTTCTTGTTGTTCTAGTACGAACAACAAGGATTCAAAAGAAGGTAATTTGAGAGAGGTGAAAATAAGGATGACAAAGAAGGAGCTTGAAGAATTGGTTGGATGGTTAAACATGGCGGATTCAAGCTTTGAACATGTTATGGCTCGCCTTGTGAACGTTATTAGCGACCAAAATGGTGAAAATAATGACCAAATGGTGAAATTGCGTCAGCAACGTTCATGGAGGCCTTCTTTGCAAAGCATTCCTGAGATAATTTGA

Protein sequence

MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEII

Homology

[Close]

BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 5   DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSS 64
           DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSS
Sbjct: 18  DRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMTKKELEELVGWLNMADSS 77

Query: 65  FEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 107
           FEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 78  FEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.1e-36
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 5   DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSS 64
           DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSS
Sbjct: 18  DRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMTKKELEELVGWLNMADSS 77

Query: 65  FEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 107
           FEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 78  FEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           + GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTKKEL+EL+GWLNMA
Sbjct: 14  VSGGDRRAQPPKNLRQRRHGAGSC--STTIKGSKEGNLRELKIRMTKKELKELIGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQSIPEII
Sbjct: 74  DSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSIPEII 124

[Close]

BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.0e-30
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           MEG    TPP+KNH QR+ +  S         SKE NLREVKIRMTKKEL+ELVGWLNMA
Sbjct: 14  MEGSHPTTPPFKNHPQRRNQEGS---------SKETNLREVKIRMTKKELQELVGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 74  DSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of Lsi01G004200 vs. ExPASy TrEMBL
Match: A0A438EDR4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 39  REVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKLRQQRSWRPS 98
           REVKI++TKKELEEL+  ++M   + EHV+A+L+      NG +ND+    ++QRSWRP+
Sbjct: 63  REVKIKITKKELEELLARVDMQGVTLEHVLAQLM-----INGTDNDRSADKQRQRSWRPA 122

Query: 99  LQSIPEI 106
           LQSIPE+
Sbjct: 123 LQSIPEV 124

[Close]

BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 87/104 (83.65%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 5   DRRTPPWKNHHQRK-PEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMADSS 64
           DRRTPP KNH QR+  EGSSCC       SKE NLREVKIRMTKKELEELVGWLNMADSS
Sbjct: 18  DRRTPPLKNHRQRRHEEGSSCC-------SKETNLREVKIRMTKKELEELVGWLNMADSS 77

Query: 65  FEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 107
           FEHVMARLVNVI+DQNG+ NNDQ+VKLRQQRSWRPSLQSIPEII
Sbjct: 78  FEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           + GGDRR  P KN  QR+    SC  ST  K SKEGNLRE+KIRMTKKEL+EL+GWLNMA
Sbjct: 14  VSGGDRRAQPPKNLRQRRHGAGSC--STTIKGSKEGNLRELKIRMTKKELKELIGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNG-------ENNDQMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVISDQNG       EN  QMVKLRQQRSWRPSLQSIPEII
Sbjct: 74  DSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSIPEII 124

[Close]

BLAST of Lsi01G004200 vs. NCBI nr
Match: XP_023544016.1 (uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-30
Identity = 80/113 (70.80%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           + GGDRR  P KN  QR+   +SC  ST  K SKEGNLRE+KIRMTKKEL+ELVGWLNMA
Sbjct: 14  VSGGDRRALPPKNLSQRRHGANSC--STTIKGSKEGNLRELKIRMTKKELKELVGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVIS+ NG++++       QMVKLRQQRSWRPSLQSIPEII
Sbjct: 74  DSSFEQVMARLVNVISEHNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSIPEII 124

[Close]

BLAST of Lsi01G004200 vs. NCBI nr
Match: KGN49118.1 (hypothetical protein Csa_002843 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           MEG    TPP+KNH QR+ +  S         SKE NLREVKIRMTKKEL+ELVGWLNMA
Sbjct: 14  MEGSHPTTPPFKNHPQRRNQEGS---------SKETNLREVKIRMTKKELQELVGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNGE-NNDQMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVI+ QNG+ NNDQ+VKLRQQRSWRPSLQSIPE+I
Sbjct: 74  DSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of Lsi01G004200 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-29
Identity = 79/113 (69.91%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MEGGDRRTPPWKNHHQRKPEGSSCCSSTNNKDSKEGNLREVKIRMTKKELEELVGWLNMA 60
           + G +RR  P KN  QR+   SSC  ST  K SKEGN+RE+KIRMTKKEL+ELVGWLNMA
Sbjct: 14  VSGRNRRALPPKNVRQRRHGASSC--STTIKGSKEGNMRELKIRMTKKELKELVGWLNMA 73

Query: 61  DSSFEHVMARLVNVISDQNGENND-------QMVKLRQQRSWRPSLQSIPEII 107
           DSSFE VMARLVNVIS+QNG++++       QMVKLRQQRSWRPSLQSIPEII
Sbjct: 74  DSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQSIPEII 124

[Close]

BLAST of Lsi01G004200 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.5e-06
Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 15  HQRKPEGSSCCSSTNN----KDSKEGNLREVKIRMTKKELEELVGWLNMADSSFEHVMAR 74
           H    +G      T+N      S     RE+KIR+TKKELE+L+  + +   + E ++++
Sbjct: 36  HDDNDDGEKLLGETSNVTSTSSSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSK 95

Query: 75  LVNVISDQNGENNDQMVKLRQQRSWRPSLQSIPEI 106
           L+    DQ G +   +    Q   W+P LQSIPE+
Sbjct: 96  LIFEGGDQIGFSAVDVTNHHQ--PWKPVLQSIPEM 128

[Close]

BLAST of Lsi01G004200 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-05
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 31  KDSKEG-NLREVKIRMTKKELEELVGWLNMADSSFEHVMARLVNVISDQNGENNDQMVKL 90
           +DSK      E+KIR+TKK+L +L+  +N+ D +F+        +       NN    + 
Sbjct: 46  RDSKSSVPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPIL-------NNRGYEEA 105

Query: 91  RQQRSWRPSLQSIPEI 106
            QQR WRP LQSIPE+
Sbjct: 106 NQQRLWRPVLQSIPEV 114

The following BLAST results are available for this feature:

BLAST of Lsi01G004200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G004200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNX5	6.1e-36	83.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	6.1e-36	83.65	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	1.2e-31	73.45	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A0A0KHU7	5.0e-30	72.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A438EDR4	2.4e-08	52.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_068559 PE=4 SV=1	[more]

BLAST of Lsi01G004200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441100.1	1.3e-35	83.65	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	2.5e-31	73.45	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
XP_023544016.1	4.6e-30	70.80	uncharacterized protein LOC111803724 [Cucurbita pepo subsp. pepo]	[more]
KGN49118.1	1.0e-29	72.90	hypothetical protein Csa_002843 [Cucumis sativus]	[more]
KAG6603773.1	2.3e-29	69.91	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi01G004200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	8.5e-06	32.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	5.5e-05	38.16	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 22..104
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 22..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G004200.1	Lsi01G004200.1	mRNA