Lsi01G003980 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTGGGTTTAAGTCGGTTTGGGGTCCAACCATTTGAATTTGGATTTTTTTGGCATTTGGGTCCCAATCAATTCTTTCATTCAATCAGCTTCAGATAGGCGCAGCCCAATCCAATTTTGTGGGCTTCCATCATTCTTTGGAATGAGATCGGCTAATGAACCTCTGGAAATTGAGATTGCAGAATCGCGCGTATTTCAGCACGCACTCCATCTTCGAAGGCTTTCTTTCCCGGAGTAACTACTGATACTTCTTCTGTTTTTGTCGGCTATGGAAATCCTTGTTAGACGCTTAGCTTCTACCGATGCTGCTCGGTGCTTGTCTACTTCACTTACCCGTTCCGCTCCTAATTTTCGAAATCGATTCCCCTCTCAGATCGGTAGCCTTTGTAGTTTTTCCCACTCCTCCGTCACCACTGGTAAGGTTTAGTTCTTCTCCAATCTCTAGCTCTTGCATTTCAGTTTTGCTCTTTCTTTTAAGTCTTTTAGCAAATGTCAAAACTTGTCAACTGTAGTTCATCATTAAACTTCGCGTTCTATTGTTTGCAAAGTAGAAGGTGATGCTGCACTAAATTGCTTTGGATTTCGGAAATGGCACAATGGGGGTGGGACTTTCCATCACTCCGCTTGCATTGATCCAACAGCAGTTATCGAGATTGGTGCCGTGGTTCACTCGAAATCTCTCGTTGGTGCAAGTGTGCATATTGCATCAGGATCTGTTATTGGACATGCTGTTACAATTGGTCAATCAACAAAGATCGGGTTTGTTATCTTCTTTGACTGGATTCAAACAAAGCTTTCCATAGTTTTTGAATTATGAATTTTTACATTTGCGTTCTGCTATTTTACTTCTCTTTTGTAATGGAATTACTTTGCAATCTCTAGGTTTAATGTTGCACTTAGTAATTGCACCGTAGGTGATTTTTGCGTTATCCACAATGGAGTGTGCGTTGGTCAAGATGGTAAGGCTGATTTTCATAAACTCAATTGATGGAATTCATGGGAATTTGACTACCCATCATGAAAAAGGCATTGCAATTCATGTTAATTTCAAAAAATAGCAGGGAGAGACTTAACTTACCAACCCAAATACTCAAATCTCAGTCTTATCAAGTTTTATGGATAAAATTACATGATCTAATGCCTAATAGTGTAGAGGTCAATTAGGTTTAATATCTTTTGAAACTCATTCGCTACTAATAACTCTTGAGATTATTATGTGTATTTGCTTATAATTAGCTATCACTAATGCCTATATGTTAAAATTTCAAGTGAATGTCCTCCATGGAACATTTAAGTGCAGTATTTGTGATCTTTCAGCCATCTTTATTCATCAAATGAATTGTCTCGTTCCAAGGTGAATCATCAAATCAAAATGCTAATTCCAATATTTTCTCCTTGTAGGATTTGGATTCTTTGTGGATGAGCACGGGACCATGAAAAAGAAACCTCAAGTTTGTGTCATAAACCTCTATTTCCATTATTTCTCCATTCTTTGATCGAACAATTCAGGAACAGAGAGTTTAACAAATCTGTTGTGCTAGTTCTCCATGAGCTACTACTTTCCACAACATCCACTCATGAATTAGCGAACTACTTGATTTGACAGACTTCTGCTTGTGCTCTTCAAGTGTCAATCTCTTATACTTGATAATTATTTATGATTTTGGGAGTTTTTTTTTACTTCATCTTTGGTATCAGGATGGATAGTTATGTTTGGTAGAATCAATAAAGATATTTTGCCAATATCAACTTTCCTTTTATATTAGCAACTGAAATTGTTCTCATATATTTTCTTCTCCTCTTTCTTAGATGTTGAATGTCAAGATAGGAACGAATGTTGAGATTGGTTCCAATACTTGCATTGACAGAGGAAGGTACTGCTGTAACGGGCTGGTTATATTTTCCTTGACCGACATTGCTTTTGGGAGGAGGCTGGGTTGACATTCTAATATAGTGGTCTGTCTATGCAGCTGGAGAGATACTATCATAGGCAATAATACAAAAATTGACAATTTGGTTCAGGTTTTTCCTCCCCCACCGGCCACCACACATTCAACCACGCACCCACGCACAACAGTAATTCATAGTCAAAATCATCATAGTGACTACCAAACTCTTCCTGGCTATTTAGATCGGTCATAATGTAATTATTGGAGATTGCTGCATGCTTTGTGGACAAGTGGGAATTGCAGGATCTGCGACGTACATTTTTTTGCTTCTCCTGGACTCTGCTGTGATTTCTTATATTGCCTATTCAATTTAGATTCAGTTTTTTTATGAGAGCTTCTTTCTTTCTTCTTTTTTTTTTTTTTTGGTAACAATTCTACCAGCAATGACTTTGGTTGACTCATTTCTTTCAGGATAGGGGACTATGTAACGTTGGGTGGGAGAGTAGCTATCCGTGATCACGTATCAGTTGGATCAAAAGTAAATCTCTTCAAGTTGGATTTACTATTTACTATGAAAACACCAAACAGATCAAGATATTTTCTGTGGGTATGCTTTTACGGACAAGAAGTCTTGGATTGAGGTGTCTAACTGGTAAAAGTCTGCAGGTCCGGCTTGCTGCCCTGAGTTGTGTCACCAAAGACATTAAGGAACCTGGGGATTATGGTGGCTTTCCTGCTGTAAGGATTATATATTGGTTTTACTTTTGCATATGCACTGCATTTTGAGGGTTCAAGAACAGTGAATTAAATTTATAGGTTATGAGTTGATATTGACTGTAATCATATATAACTACAAAATCCATCAATGTTTGAACCATTTTTCCGTTTCTTTTTCCCGGTAGATACCAATTTATGCATGGAGACGGCAAGTCGCTAAGCATTCTCAGACGTCGAGGAAGAAATGAAATCAGAGAACTTCAAGGTTCTTTCATCTGTTATTGACTGACATCATTTGAGTTTGGAGTTGCAGATCATGCAAGAGTGGAAGTAAGTGCTGCTATGACTAGCATTTTTAGACTCTTAGCTGACCACTTAGTTGATGATTACTGTGCTTTTTGTTTTTTTCCCCTAAAAGAATATCCTTTGCCATTGATTAGATAAACTTTTTATGATGATTACTATGCTCAAAACATTCTATTGATAAACTATATGAAATATTGATGAACAACATAAAAAAGTTGATAGGTAACAGATTTCCATGGTCTTAAAAAGTGTAAACCAACAAACAAGTTATTCTATAAGGATTTCCTAATCACTAAAAACATATTAATAACTGCTAAAAGTTACAACGCGTATATCAAGGTAAATAATAAATTCCATGACCAGATATTAGCCTAGCGAAAATACAGTCAAACAGAAAATTCAGCAAAATGTCCACCAAATGCCAATATTTACCACAAGTCATATTAACGTGATAACATCCCTCGTATAGATACTCTCCCCCAACCAACAGTGCTGGTAAAGATTTTGACAAGAGAGCTTTCTAGACCAGGTAATCTACCATTTGAAAGAAAACGGCACTAACCGCTCTAACTCAGCTTGAGGGCTTGGAGGGGCATTCAACACTAGAGTCCATTAGTTCAATACAATATAAAATCACATTGGAAGCAGGAGAAAAAATTCAGTTGGACCAGTAACTTTCTGCCTATAACCAATGTTGCTGAAAATATCTATAGCAAGTTGTAGCATTCAACCCAACTTAACCATGTGACCCAGAATTTCAATGAACCTCAACAAGCTAATAAATTGAACACACAGGTGAGGTGACATGTACACTTGCTAGAAAATAGATTAGATCGCACAAAACCACAAGAAATGTATGCTTTAACTTGCAAGTAGGGAAAATTACATCTAGATGAAACTTATAGTATATAGTGAAGTGAAGGAATGAAAACTCACATTCTGTTAGGAACCAAGGTAGTATGGACTACCTTTGTTCCACATTGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGGCTTAGCTCTCCCACCTCAATAGCTAGCTTTTGAGGTGTGGTTCTCCAAGGTACTTAAGTACCTAACACATTCCTCCCAGGCCTCCCCATCTGCATAACACCCCTTTTTGCAAAATACCCGCCCTACAATGAAACCATTGAGATTATGCGGAAGCAGAAAAAATATTATCAGACTACTCAAATTCAGACATAAACAAAACTAATATTATAATCCCCTGACTTCTGTTCTAACGACATCATCTTAGTATCAGATTCCAAAGGATCCCACGTGAAACTAATAATCTTTGTTCGTAAGTAAACACACTATTCGCCGCCCAATCAAATAGATGAATATCCTCACGGGATGCCCAAATCCATATCACAAATACAATTCATAAAACCTCAAATTCCGATTACGTAACGTAGGGTTAAAGTATAGTCTCCGAGAATCCATTACCACAACAAAAGAGTGCATTCCCATCAACAGATTCATCCAAAATACTGTTTCCTGGCAAAATCACATGTAATAAGAATAAATAATAATGACCCAATCCGAATATTTCCGGTGTGTTTAGAGCATAAATTAATTAATATTATTGTTTTGTGGCTTCAGGTTTATGTGTTGTTTATTGTTTTCTTTTTATGATTTTGTTATTTTGTTATTTTTTTTTTATTTTAATGATAGATAATGACGGTGGAAGAAGACGAGGGAGAGAGACCTTATGCATTTGTCAAGGTATGATATGACAACGAAGGGAGGTAAAGGTGAAAATAAGATTTAGAGAGAAGAAGACAAGTGTGAGATCAAGGTTTCGGAAACATATTAATTTCATTTACAAAGTTGTACTCAAATGTTAATTTGTTGCCAGAATCTTGCATCTAAATTACTAAATTGCAACTATAATAATTAAATTTGTTTGTCTATATTTTAT ATGTCGCGCAGCCCAATCCAATTTTGTGGGCTTCCATCATTCTTTGGAATGAGATCGGCTAATGAACCTCTGGAAATTGAGATTGCAGAATCGCGCGTATTTCAGCACGCACTCCATCTTCGAAGGCTTTCTTTCCCGGAACGCTTAGCTTCTACCGATGCTGCTCGGTGCTTGTCTACTTCACTTACCCGTTCCGCTCCTAATTTTCGAAATCGATTCCCCTCTCAGATCGGTAGCCTTTGTAGTTTTTCCCACTCCTCCGTCACCACTGAAGGTGATGCTGCACTAAATTGCTTTGGATTTCGGAAATGGCACAATGGGGGTGGGACTTTCCATCACTCCGCTTGCATTGATCCAACAGCAGTTATCGAGATTGGTGCCGTGGTTCACTCGAAATCTCTCGTTGGTGCAAGTGTGCATATTGCATCAGGATCTGTTATTGGACATGCTGTTACAATTGGTCAATCAACAAAGATCGGGTTTAATGTTGCACTTAGTAATTGCACCGTAGGTGATTTTTGCGTTATCCACAATGGAGTGTGCGTTGGTCAAGATGGATTTGGATTCTTTGTGGATGAGCACGGGACCATGAAAAAGAAACCTCAAATGTTGAATGTCAAGATAGGAACGAATGTTGAGATTGGTTCCAATACTTGCATTGACAGAGGAAGGTACTGCTGTAACGGGCTGGTTTTTCCTCCCCCACCGGCCACCACACATTCAACCACGCACCCACGCACAACAGTAATTCATAGTCAAAATCATCATAGTGACTACCAAACTCTTCCTGGCTATTTAGATCGGATAGGGGACTATGTAACGTTGGGTGGGAGAGTAGCTATCCGTGATCACGTATCAGTTGGATCAAAAGTCCGGCTTGCTGCCCTGAGTTGTGTCACCAAAGACATTAAGGAACCTGGGGATTATGGTGGCTTTCCTGCTATAATGACGGTGGAAGAAGACGAGGGAGAGAGACCTTATGCATTTGTCAAGGTATGATATGACAACGAAGGGAGGTAAAGGTGAAAATAAGATTTAGAGAGAAGAAGACAAGTGTGAGATCAAGGTTTCGGAAACATATTAATTTCATTTACAAAGTTGTACTCAAATGTTAATTTGTTGCCAGAATCTTGCATCTAAATTACTAAATTGCAACTATAATAATTAAATTTGTTTGTCTATATTTTAT ATGTCGCGCAGCCCAATCCAATTTTGTGGGCTTCCATCATTCTTTGGAATGAGATCGGCTAATGAACCTCTGGAAATTGAGATTGCAGAATCGCGCGTATTTCAGCACGCACTCCATCTTCGAAGGCTTTCTTTCCCGGAACGCTTAGCTTCTACCGATGCTGCTCGGTGCTTGTCTACTTCACTTACCCGTTCCGCTCCTAATTTTCGAAATCGATTCCCCTCTCAGATCGGTAGCCTTTGTAGTTTTTCCCACTCCTCCGTCACCACTGAAGGTGATGCTGCACTAAATTGCTTTGGATTTCGGAAATGGCACAATGGGGGTGGGACTTTCCATCACTCCGCTTGCATTGATCCAACAGCAGTTATCGAGATTGGTGCCGTGGTTCACTCGAAATCTCTCGTTGGTGCAAGTGTGCATATTGCATCAGGATCTGTTATTGGACATGCTGTTACAATTGGTCAATCAACAAAGATCGGGTTTAATGTTGCACTTAGTAATTGCACCGTAGGTGATTTTTGCGTTATCCACAATGGAGTGTGCGTTGGTCAAGATGGATTTGGATTCTTTGTGGATGAGCACGGGACCATGAAAAAGAAACCTCAAATGTTGAATGTCAAGATAGGAACGAATGTTGAGATTGGTTCCAATACTTGCATTGACAGAGGAAGGTACTGCTGTAACGGGCTGGTTTTTCCTCCCCCACCGGCCACCACACATTCAACCACGCACCCACGCACAACAGTAATTCATAGTCAAAATCATCATAGTGACTACCAAACTCTTCCTGGCTATTTAGATCGGATAGGGGACTATGTAACGTTGGGTGGGAGAGTAGCTATCCGTGATCACGTATCAGTTGGATCAAAAGTCCGGCTTGCTGCCCTGAGTTGTGTCACCAAAGACATTAAGGAACCTGGGGATTATGGTGGCTTTCCTGCTATAATGACGGTGGAAGAAGACGAGGGAGAGAGACCTTATGCATTTGTCAAGGTATGA MSRSPIQFCGLPSFFGMRSANEPLEIEIAESRVFQHALHLRRLSFPERLASTDAARCLSTSLTRSAPNFRNRFPSQIGSLCSFSHSSVTTEGDAALNCFGFRKWHNGGGTFHHSACIDPTAVIEIGAVVHSKSLVGASVHIASGSVIGHAVTIGQSTKIGFNVALSNCTVGDFCVIHNGVCVGQDGFGFFVDEHGTMKKKPQMLNVKIGTNVEIGSNTCIDRGRYCCNGLVFPPPPATTHSTTHPRTTVIHSQNHHSDYQTLPGYLDRIGDYVTLGGRVAIRDHVSVGSKVRLAALSCVTKDIKEPGDYGGFPAIMTVEEDEGERPYAFVKV Homology
BLAST of Lsi01G003980 vs. ExPASy Swiss-Prot
Match: F4JIP6 (Probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXD2 PE=3 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 2.5e-64 Identity = 135/259 (52.12%), Postives = 174/259 (67.18%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy Swiss-Prot
Match: F4JGP6 (Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LPXD1 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 4.3e-61 Identity = 123/222 (55.41%), Postives = 150/222 (67.57%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy Swiss-Prot
Match: Q11IJ0 (UDP-3-O-acylglucosamine N-acyltransferase OS=Chelativorans sp. (strain BNC1) OX=266779 GN=lpxD PE=3 SV=2) HSP 1 Score: 111.3 bits (277), Expect = 2.1e-23 Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy Swiss-Prot
Match: Q89KQ2 (UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=lpxD PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.7e-23 Identity = 94/294 (31.97%), Postives = 134/294 (45.58%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy Swiss-Prot
Match: Q0HGW5 (UDP-3-O-acylglucosamine N-acyltransferase OS=Shewanella sp. (strain MR-4) OX=60480 GN=lpxD PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.0e-22 Identity = 73/216 (33.80%), Postives = 111/216 (51.39%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy TrEMBL
Match: A0A5D3CRN8 (Putative UDP-3-O-acylglucosamine N-acyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006710 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 4.9e-108 Identity = 211/273 (77.29%), Postives = 219/273 (80.22%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy TrEMBL
Match: A0A1S3AZZ4 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484587 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 4.9e-108 Identity = 211/273 (77.29%), Postives = 219/273 (80.22%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy TrEMBL
Match: A0A1S3B008 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484587 PE=4 SV=1) HSP 1 Score: 396.4 bits (1017), Expect = 1.2e-106 Identity = 211/274 (77.01%), Postives = 219/274 (79.93%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy TrEMBL
Match: A0A0A0KL94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515460 PE=4 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 4.5e-101 Identity = 198/269 (73.61%), Postives = 207/269 (76.95%), Query Frame = 0
BLAST of Lsi01G003980 vs. ExPASy TrEMBL
Match: A0A6J1CLZ2 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012505 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 8.4e-100 Identity = 199/292 (68.15%), Postives = 218/292 (74.66%), Query Frame = 0
BLAST of Lsi01G003980 vs. NCBI nr
Match: XP_038882999.1 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X2 [Benincasa hispida]) HSP 1 Score: 412.1 bits (1058), Expect = 4.4e-111 Identity = 213/273 (78.02%), Postives = 225/273 (82.42%), Query Frame = 0
BLAST of Lsi01G003980 vs. NCBI nr
Match: XP_038882995.1 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X1 [Benincasa hispida] >XP_038882997.1 probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X1 [Benincasa hispida] >XP_038882998.1 probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X1 [Benincasa hispida]) HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-109 Identity = 213/274 (77.74%), Postives = 225/274 (82.12%), Query Frame = 0
BLAST of Lsi01G003980 vs. NCBI nr
Match: XP_008439955.1 (PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X2 [Cucumis melo] >TYK13066.1 putative UDP-3-O-acylglucosamine N-acyltransferase 2 [Cucumis melo var. makuwa]) HSP 1 Score: 401.0 bits (1029), Expect = 1.0e-107 Identity = 211/273 (77.29%), Postives = 219/273 (80.22%), Query Frame = 0
BLAST of Lsi01G003980 vs. NCBI nr
Match: XP_008439954.1 (PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial isoform X1 [Cucumis melo]) HSP 1 Score: 396.4 bits (1017), Expect = 2.5e-106 Identity = 211/274 (77.01%), Postives = 219/274 (79.93%), Query Frame = 0
BLAST of Lsi01G003980 vs. NCBI nr
Match: XP_004134746.1 (probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Cucumis sativus] >XP_031743640.1 probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Cucumis sativus] >KAE8647665.1 hypothetical protein Csa_003788 [Cucumis sativus]) HSP 1 Score: 377.5 bits (968), Expect = 1.2e-100 Identity = 199/266 (74.81%), Postives = 206/266 (77.44%), Query Frame = 0
BLAST of Lsi01G003980 vs. TAIR 10
Match: AT4G21220.1 (Trimeric LpxA-like enzymes superfamily protein ) HSP 1 Score: 247.3 bits (630), Expect = 1.7e-65 Identity = 135/259 (52.12%), Postives = 174/259 (67.18%), Query Frame = 0
BLAST of Lsi01G003980 vs. TAIR 10
Match: AT4G05210.1 (Trimeric LpxA-like enzymes superfamily protein ) HSP 1 Score: 236.5 bits (602), Expect = 3.1e-62 Identity = 123/222 (55.41%), Postives = 150/222 (67.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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