Lsi01G003070 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTGTAGCACTAATGATGATTATCCTAAGGGTTTAACAATAACCCACTTCCCAAACACTGATTCCTCACACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGGTCAGTTTAATCGAAGTTTTCATTTTTTATTCATTATTTCCTTTCTTTTCTTTCATTATTATTATTATTGTTTTGTGTTCTTTTTTTTTTCTCCCTCCTTAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCGTTGGGCAGGATTGTCCTCCCCAAGGTTTGTATTTTCTGACCCTTCTTTTAGATCTCTCACTCCCTAAAATTTTATTTTCTGCCTCTTCCAATAGAACAGTGAAAATTGGATAGAACTATCCCCCCCACCCCCAAAAAAAAAAAAAAAAAAAAACATGCAAATGGGAAAATGAAGAAGAATGGATAACTACAAACAAAATTATAAAATCTCAGTTCCCCACAATCCCCCCCTCCCTTTTTTTTACACACACACACAGAACAAAATAGGAAAAATAAAACACTAAAAAAGAAACCCTATTATAGTTTTTTTGGTGCAAAGAAAAAAAATATTTAATACAACCCAATAATCAAATTTCAAACTTTTTTTTTCTCTTTTCTTGTTGCTGTCCACAGAGATTACCTTCTATTGAAATCTTGAACTAATTAAAGCATTATATAGATAGATAGATAACAAGGTAAAAAATAAAATAAATAAAAGGAAAATTTGAAAATAGTTCATTAGAATCTTGAATTTTGAATAGTCTTAATTTGTAAAGTGTTGTGAATATATATTACAGAGGGAGGCAGAAGAGAACCTTCCATTTCTGACTGATAAGGAAGGTATCCAAATTGTAGTGAGAGATGTGAACTCGATCAGAAAATGGACCATGAAATACAAGTAAGCCAACAAAGACCAATCAATCTTCTAATTCCTCTTTTAATTAATTAATGGATTCATTGGAAATTTAACACCTTTTTTTTCCTTCTTAATTAATGAATTAATTAATTAACCCCTTCAAATTCTTGTTGAGTTTAATTATTATAGGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGTTTCACTCCCACAAACTAACTTAATTACTTTACTTTTCTTCAAAATCATTTTCTGATCAAATTCCTAATTTCTCTATTAGGGGAATTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCGATGACACTATACGAGGATGACTGCAAGAACCTCGTGAGTATTATTTTACTTTTTTTTCCCCCTAAAATTTGACTTTTGAATTAGAAATTTTATGAAAATTAGTAAGATAATAATGGTGGTGTGGGGTTTCCTAATATGGTGGTTTAGTAACGCTTGGAAAGATGCGTATAGACCATAGAGAGATGAGACAGAAAAACAAAAACAAAAACAAAGAAATAATAATCATAATAGTAATATGGACAAAAAATAACAGTATTTTCGACACGTAAAATTTGATGTTCCTATAATTACTTTGTTTTTGACAGATAGGATTTCCCACTTCGTGGGGCCATCCAAACCCGTCAGTTACAACTTTCTTTCCCCCCATCAAATCAACATTCTTCATCTTATTTTCTTTTGAATTTCAAGAACAATTTTTTTTTTTTTTTAAGTACAAGGTAATCTAGGATTCCTTTTTTTAGTTTTTAGTTTTCTTTAATTCAATTTTTTTCCATCATAAGAAATTTGAAGTTAAAACATGATTTTAGTATATATATATTTAAATTTCATTTTATAATTTCAAATTTAGTTCATATATTTGGAGAACGCTAGAATGTAGACCTTAGAATTTATAATTAGAATTTAATCCTTATAGTTGGATTAGACCCTTTTTATGAGGTCTTATCAAACCATATGGACTAAATTCTAACTTTTAAAATCACAGGGACTAAATTTGACTTTCTCCAAATCAAATGAATTAAGTTTACAATTTAACTTAAATTTAACCCATTGAAGTTAATTTTAATTAAAGCTAGTAATTTTCATGAAAAAAAAAATACAATGTGAAAATATTTTTAGAATTTATAGAGAAAGCGCTCATATTGGTTTTTTTTACGACTATTTAAACAATTTTGTTAAAGAAGCAATTAAATTTGGACATTAATTAAAAAGTATAGCAATTAAAATAGATTGAAACTCAAAGTAGATTGACTAAAATAATACTTTAGTCTAATTTAAATTTGGCTAACTTCTTCTAAATCTATTTATAAAGTTTGAAATTCATTTTAACTATACTTGTATCATTTAAATAAAGTTTCACATTTATGAATTTCCTAATTGATACAAATATGCCCTTAACAATTTTACAGTTAAAATATATAAGTTATGAAAATTGACATGGTTGTTGAGTTATAAATTTAGCAATAATAATAGACATGATAATTATGGATAACTAGTGACAACAACTAAGAATTGGGGGAGAGGGAGAGAATTTAAAAATGAACCATGACAAACGTTTATGAATTAATTATAAATTATGTTCAAATGCATGTGTTTAATTAAGATATGAAGGTTCATATAAAAAAAAAATCATATGTTACATTTATTGTGATTATGTTTTATATATATTATATGGTTGTACATGAGGAGGGCAGTACGTGGCGGTTGAAAAAGGTGAGAATCATTCAAGAATGGAAGAAAATTACAAGCAGCAGCAGCAGCAGCAGCAGTGTAGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGAAGCTTCTTTAGCTTTGTTGATAGAAGAGCTCAAACACAAAGCTGAAGACGATCCCCACGCGCCGCCCTGCTGCACCGATTATTCCTACTTCACCACTGCTACTCCGCCCAATACTATGATGGGAGGTGCTACAATTAGAGGCAGTTTTAATAACAATAATAATGCGACAAATATTAATTATAAGGAAGTAATGGAAGATTTGCAGGGGATTAATAATAATAATAATAATAATAATGGGAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTCTTTGACTATTTTCAGCAACAATGA ATGGTTGGTTTAACAATAACCCACTTCCCAAACACTGATTCCTCACACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCGTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTGACTGATAAGGAAGGTATCCAAATTGTAGTGAGAGATGTGAACTCGATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGAATTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCGATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCAAGAATGGAAGAAAATTACAAGCAGCAGCAGCAGCAGCAGCAGTGTAGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGAAGCTTCTTTAGCTTTGTTGATAGAAGAGCTCAAACACAAAGCTGAAGACGATCCCCACGCGCCGCCCTGCTGCACCGATTATTCCTACTTCACCACTGCTACTCCGCCCAATACTATGATGGGAGGTGCTACAATTAGAGGCAGTTTTAATAACAATAATAATGCGACAAATATTAATTATAAGGAAGTAATGGAAGATTTGCAGGGGATTAATAATAATAATAATAATAATAATGGGAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTCTTTGACTATTTTCAGCAACAATGA ATGGTTGGTTTAACAATAACCCACTTCCCAAACACTGATTCCTCACACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCGTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTGACTGATAAGGAAGGTATCCAAATTGTAGTGAGAGATGTGAACTCGATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGAATTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCGATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCAAGAATGGAAGAAAATTACAAGCAGCAGCAGCAGCAGCAGCAGTGTAGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGAAGCTTCTTTAGCTTTGTTGATAGAAGAGCTCAAACACAAAGCTGAAGACGATCCCCACGCGCCGCCCTGCTGCACCGATTATTCCTACTTCACCACTGCTACTCCGCCCAATACTATGATGGGAGGTGCTACAATTAGAGGCAGTTTTAATAACAATAATAATGCGACAAATATTAATTATAAGGAAGTAATGGAAGATTTGCAGGGGATTAATAATAATAATAATAATAATAATGGGAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCTGAAGTTAGTGGATTCAAGTTCCCTCTCTTTGACTATTTTCAGCAACAATGA MVGLTITHFPNTDSSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGEFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENYKQQQQQQQCSNLSNMEIKDEEEEASLALLIEELKHKAEDDPHAPPCCTDYSYFTTATPPNTMMGGATIRGSFNNNNNATNINYKEVMEDLQGINNNNNNNNGNGNGFEDCFGGLDTLPEVSGFKFPLFDYFQQQ Homology
BLAST of Lsi01G003070 vs. ExPASy Swiss-Prot
Match: Q1PFR7 (B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana OX=3702 GN=LEC2 PE=1 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 4.4e-38 Identity = 97/222 (43.69%), Postives = 139/222 (62.61%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy Swiss-Prot
Match: P26307 (Regulatory protein viviparous-1 OS=Zea mays OX=4577 GN=VP1 PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.9e-26 Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy Swiss-Prot
Match: A4LBC0 (B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica OX=39947 GN=LFL1 PE=2 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 3.8e-26 Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy Swiss-Prot
Match: Q01593 (B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana OX=3702 GN=ABI3 PE=1 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 5.0e-26 Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy Swiss-Prot
Match: Q9LW31 (B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana OX=3702 GN=FUS3 PE=1 SV=2) HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24 Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy TrEMBL
Match: A0A6J1IQY4 (B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 1.9e-84 Identity = 188/304 (61.84%), Postives = 210/304 (69.08%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy TrEMBL
Match: A0A6J1IU08 (B3 domain-containing transcription factor LEC2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 1.6e-83 Identity = 186/300 (62.00%), Postives = 208/300 (69.33%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy TrEMBL
Match: A0A6J1EJR4 (B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=LOC111433235 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 7.9e-83 Identity = 187/304 (61.51%), Postives = 210/304 (69.08%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy TrEMBL
Match: A0A6J1KW90 (B3 domain-containing transcription factor LEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111496981 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 9.0e-71 Identity = 164/285 (57.54%), Postives = 202/285 (70.88%), Query Frame = 0
BLAST of Lsi01G003070 vs. ExPASy TrEMBL
Match: A0A6J1EM52 (B3 domain-containing transcription factor LEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111433814 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 4.9e-69 Identity = 158/287 (55.05%), Postives = 199/287 (69.34%), Query Frame = 0
BLAST of Lsi01G003070 vs. NCBI nr
Match: XP_011658520.1 (B3 domain-containing transcription factor LEC2 [Cucumis sativus]) HSP 1 Score: 395.2 bits (1014), Expect = 4.7e-106 Identity = 216/279 (77.42%), Postives = 235/279 (84.23%), Query Frame = 0
BLAST of Lsi01G003070 vs. NCBI nr
Match: XP_022978700.1 (B3 domain-containing transcription factor LEC2 isoform X1 [Cucurbita maxima]) HSP 1 Score: 322.4 bits (825), Expect = 3.9e-84 Identity = 188/304 (61.84%), Postives = 210/304 (69.08%), Query Frame = 0
BLAST of Lsi01G003070 vs. NCBI nr
Match: XP_023544601.1 (B3 domain-containing transcription factor LEC2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 319.3 bits (817), Expect = 3.3e-83 Identity = 185/305 (60.66%), Postives = 206/305 (67.54%), Query Frame = 0
BLAST of Lsi01G003070 vs. NCBI nr
Match: XP_022978701.1 (B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978702.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978703.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima]) HSP 1 Score: 319.3 bits (817), Expect = 3.3e-83 Identity = 186/300 (62.00%), Postives = 208/300 (69.33%), Query Frame = 0
BLAST of Lsi01G003070 vs. NCBI nr
Match: KAG6604454.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 318.5 bits (815), Expect = 5.6e-83 Identity = 186/306 (60.78%), Postives = 206/306 (67.32%), Query Frame = 0
BLAST of Lsi01G003070 vs. TAIR 10
Match: AT1G28300.1 (AP2/B3-like transcriptional factor family protein ) HSP 1 Score: 159.8 bits (403), Expect = 3.1e-39 Identity = 97/222 (43.69%), Postives = 139/222 (62.61%), Query Frame = 0
BLAST of Lsi01G003070 vs. TAIR 10
Match: AT3G24650.1 (AP2/B3-like transcriptional factor family protein ) HSP 1 Score: 119.8 bits (299), Expect = 3.5e-27 Identity = 54/95 (56.84%), Postives = 73/95 (76.84%), Query Frame = 0
BLAST of Lsi01G003070 vs. TAIR 10
Match: AT3G26790.1 (AP2/B3-like transcriptional factor family protein ) HSP 1 Score: 114.4 bits (285), Expect = 1.5e-25 Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 0
BLAST of Lsi01G003070 vs. TAIR 10
Match: AT2G30470.1 (high-level expression of sugar-inducible gene 2 ) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-14 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0
BLAST of Lsi01G003070 vs. TAIR 10
Match: AT4G32010.1 (HSI2-like 1 ) HSP 1 Score: 68.9 bits (167), Expect = 7.2e-12 Identity = 36/113 (31.86%), Postives = 62/113 (54.87%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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