Lsi01G002280 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGTAATTCCTAAAACATTATGTTTTTGTTATGTTTTTTCTATTCTCTGTTTTTTCACTTCAGTTTGTTTGGGACATTAACAATAATCGGGTCCTCTGTTTATGCAGGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGTATTTTTTCTCCCTCTCTCTCTTTTAACAATTCAAATTCTTCCTAATATTCAATATATATTTAGATATGATCTTGTGATGGGAACAGAGTATTAAAAACGCGAAATTTAATGTTCTAATAATACATAAAAGCAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT ATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAG MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLATKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI Homology
BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A5A7UBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008340 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79 Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0
BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: E5GC31 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79 Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0
BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A1S3B049 (uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79 Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0
BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A0A0KHW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78 Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A6J1IR65 (uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631 PE=4 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 6.8e-69 Identity = 136/173 (78.61%), Postives = 153/173 (88.44%), Query Frame = 0
BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_038893157.1 (uncharacterized protein LOC120082020 [Benincasa hispida]) HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83 Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0
BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_008439723.1 (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo] >ADN34030.1 hypothetical protein [Cucumis melo subsp. melo]) HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79 Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0
BLAST of Lsi01G002280 vs. NCBI nr
Match: KAA0052608.1 (uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa] >TYK13219.1 uncharacterized protein E5676_scaffold255G008340 [Cucumis melo var. makuwa]) HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79 Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0
BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_004134653.1 (uncharacterized protein LOC101213083 [Cucumis sativus] >KGN49320.1 hypothetical protein Csa_003445 [Cucumis sativus]) HSP 1 Score: 301.2 bits (770), Expect = 5.7e-78 Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0
BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_023544520.1 (uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68 Identity = 136/173 (78.61%), Postives = 154/173 (89.02%), Query Frame = 0
BLAST of Lsi01G002280 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23 Identity = 66/154 (42.86%), Postives = 100/154 (64.94%), Query Frame = 0
BLAST of Lsi01G002280 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators ) HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09 Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 0
BLAST of Lsi01G002280 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09 Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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