Lsi01G002280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription factor bHLH35-like protein
Location	chr01: 2078299 .. 2079380 (-)
RNA-Seq Expression	Lsi01G002280
Synteny	Lsi01G002280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGTAATTCCTAAAACATTATGTTTTTGTTATGTTTTTTCTATTCTCTGTTTTTTCACTTCAGTTTGTTTGGGACATTAACAATAATCGGGTCCTCTGTTTATGCAGGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGTATTTTTTCTCCCTCTCTCTCTTTTAACAATTCAAATTCTTCCTAATATTCAATATATATTTAGATATGATCTTGTGATGGGAACAGAGTATTAAAAACGCGAAATTTAATGTTCTAATAATACATAAAAGCAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT

mRNA sequence

ATTAAATATTACATAAGTTTACACAGATGGGGTTCCTCAGTTTTTAAATTCACATGAGAACAAGAGAGAAAATAGCTGAGTGATTGTTTCAATTTCGCCTTTAAAAACACACACAGAGAGCAACTTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCCTATTCTTCACTAACTTTTCTTAATTGTGGAGCAAGTTCAAGCTGAGAGACAACCAAAGAGACAGAGATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAGCCACTTGCTAACCTATCAATTGAATGAAAATGTTTCTTGCTATTCCATTCTCTTGTATTTTTCTTTCTTTCTATCTAATTCTAATTTGT

Coding sequence (CDS)

ATGGTTTCTACATTACAAAAGAGATTCGACTCACGAAACAAGCTACGCCTTGTTCGATCTCTGGCCACCTATGAATCCTCTGGAAGACAGAGGTGTGTGTTCTGGAATGCTGTTCTCTTCATCCATAAGCTTAAACTCAAGCTGGAAGCAGTTGAGAGAGAGTATTCAAATCTATTGGCCACGAAAAGAGAATACTTGAACTCAATAAAGCAATTTCATGCCCCCAAGGAAGTGAAGGTTGAGAAGAATGGAGAAGAGTTTAGAGTGAAAGTGAAATGCGAAAAGGGAGGAGACAGATTAGTTTCAGTACTAGAGGCATTTGAGAAAATGGGTCTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTGTATGGAGGCCATTGCTGTAGCTGAAGATCATCAATTGATTAATGTCAGTGATATAACTGAAGCTATTAATGTAGCCATTGATGGCAAATTATTAGCTGCAAATCAGCATCACAAAGACATTCCTCAGAATGATGCTGAAATTTAG

Protein sequence

MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLATKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVSCTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI

Homology

[Close]

BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A5A7UBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008340 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLN 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: E5GC31 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A1S3B049 (uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A0A0KHW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQRCVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKD-IPQNDAEI 174
           CTECFCMEA AVAED HQL+N+SDITEAINVAID KLLA NQHH D IP NDA++
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]

BLAST of Lsi01G002280 vs. ExPASy TrEMBL
Match: A0A6J1IR65 (uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.8e-69
Identity = 136/173 (78.61%), Postives = 153/173 (88.44%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVST QKRFDSR KLRLVRSL TY+SSG+Q   FWNAVLF+HKLKLKLEA+EREYSNLL+
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNS+KQ HAPKEVKVEK GEEFRVKV+CEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           C+ECF MEAIAVAED Q +N+ DITEAIN AIDGK LAANQ  K+ P+ D EI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_038893157.1 (uncharacterized protein LOC120082020 [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 160/173 (92.49%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSLATYESS +QRC+FWNAVLFIHKLKLKLEA+EREYSNLLA
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLATYESSAKQRCMFWNAVLFIHKLKLKLEAIEREYSNLLA 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+PKEVKVEKNGEEF+VKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAE+H+L+NVSDITEAINVAIDGKLLA NQHHKDIP+NDAEI
Sbjct: 121 CTECFCMEAIAVAENHRLLNVSDITEAINVAIDGKLLAGNQHHKDIPENDAEI 173

[Close]

BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_008439723.1 (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo] >ADN34030.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Lsi01G002280 vs. NCBI nr
Match: KAA0052608.1 (uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa] >TYK13219.1 uncharacterized protein E5676_scaffold255G008340 [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 156/174 (89.66%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQ CVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLN 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           CTECFCMEAIAVAED HQL+N+SDIT+AINVAID KLLA NQHH DIP NDA++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_004134653.1 (uncharacterized protein LOC101213083 [Cucumis sativus] >KGN49320.1 hypothetical protein Csa_003445 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 5.7e-78
Identity = 157/175 (89.71%), Postives = 164/175 (93.71%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVSTLQKRFDSRNKLRLVRSL TYESSGRQRCVFWNAVLFIHKLKLKLEA+EREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQRCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNSIKQFH+ KEVKVEKNGEEFRVKV+CEKGGDRLVSVLEAFEKMGLNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CTECFCMEAIAVAED-HQLINVSDITEAINVAIDGKLLAANQHHKD-IPQNDAEI 174
           CTECFCMEA AVAED HQL+N+SDITEAINVAID KLLA NQHH D IP NDA++
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDSIPHNDAQL 175

[Close]

BLAST of Lsi01G002280 vs. NCBI nr
Match: XP_023544520.1 (uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 136/173 (78.61%), Postives = 154/173 (89.02%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVST QKRFDSR KLRLVRSL TY+SSG+Q   FWNAVLF+HKLKLKLEA+EREYSNLL+
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARVS 120
            KREYLNS+KQ HAPKEVKVEK GEEFRVKV+CEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CTECFCMEAIAVAEDHQLINVSDITEAINVAIDGKLLAANQHHKDIPQNDAEI 174
           C+ECF MEAIAVAED Q +N+SDITEAIN AI+GK LAANQ  K+ P+ D EI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIEGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of Lsi01G002280 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 66/154 (42.86%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYE-SSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLL 60
           MV++ QK+  S+ K   +++L  ++ S   Q  V   A+L+I  LKL++EA++REY +L 
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  ATKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKGGDRLVSVLEAFEKMGLNVVEARV 120
            TK+E L      H  +EVKVEK GE F+VK+K  +G + LV++LEAFE+MGLNV +AR 
Sbjct: 61  ITKKESL------HQFQEVKVEKIGEMFQVKIKSPRGENNLVNILEAFEEMGLNVAQARA 120

Query: 121 SCTECFCMEAIAVAED-HQLINVSDITEAINVAI 153
           SC + F MEAI   +   +L +V D+T+ +  A+
Sbjct: 121 SCLDSFAMEAIVAPQSKDKLCSVDDLTQTLVKAL 148

[Close]

BLAST of Lsi01G002280 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 0


Query: 1   MVSTLQKRFDS-RNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLL 60
           MVS   KR  S R K  L+RS+ T   +  +  +  +A  +I KLK K+E +        
Sbjct: 1   MVSREHKRGSSLREKFHLLRSI-TDSHAESETSIIVDASKYIKKLKQKVEKINN------ 60

Query: 61  ATKREYLNSIKQFHAPKE-VKVEKNGEEFRVKVKCEKG-GDRLVSVLEAFEKMGLNVVEA 120
           AT  E   S ++   P   V VE   + F +KV   K     LV VLE FE +GL+VVEA
Sbjct: 61  ATTSE--QSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEA 120

Query: 121 RVSCTECFCMEAIAVA--EDHQLINVSDITEAINVAI 153
           RVSCT+ F + AI  +  +D   I+   + +A+  AI
Sbjct: 121 RVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAI 148

[Close]

BLAST of Lsi01G002280 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 52/154 (33.77%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 1   MVSTLQKRFDSRNKLRLVRSLATYESSGRQRCVFWNAVLFIHKLKLKLEAVEREYSNLLA 60
           MVS  QKR   + K +L+RS+ T   +     +  +A  +I KLK K+E   ++      
Sbjct: 1   MVSREQKRGSLQEKFQLLRSI-TNSHAENDTSIIMDASKYIQKLKQKVERFNQD------ 60

Query: 61  TKREYLNSIKQFHAPKEVKVEKNGEEFRVKVKCEKG-GDRLVSVLEAFEKMGLNVVEARV 120
              E  +S         V VE   + F + V   K     LVSVLEAFE +GLNV+EAR 
Sbjct: 61  PTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARA 120

Query: 121 SCTECFCMEAIAVA-EDHQLINVSDITEAINVAI 153
           SCT+ F + A+ +  ED + ++   + +A+  AI
Sbjct: 121 SCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAI 147

The following BLAST results are available for this feature:

BLAST of Lsi01G002280 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G002280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBN8	3.3e-79	89.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC31	3.3e-79	89.66	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B049	3.3e-79	89.66	uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=...	[more]
A0A0A0KHW9	2.8e-78	89.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1	[more]
A0A6J1IR65	6.8e-69	78.61	uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631...	[more]

BLAST of Lsi01G002280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893157.1	1.5e-83	92.49	uncharacterized protein LOC120082020 [Benincasa hispida]	[more]
XP_008439723.1	6.7e-79	89.66	PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo] >ADN34030.1 hypot...	[more]
KAA0052608.1	6.7e-79	89.66	uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004134653.1	5.7e-78	89.71	uncharacterized protein LOC101213083 [Cucumis sativus] >KGN49320.1 hypothetical ...	[more]
XP_023544520.1	1.1e-68	78.61	uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi01G002280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29270.1	1.9e-23	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56220.1	4.6e-09	36.31	transcription regulators	[more]
AT2G40435.1	6.0e-09	33.77	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..155
None	No IPR available	PANTHER	PTHR31945:SF27	TRANSCRIPTION FACTOR BHLH35-LIKE PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G002280.1	Lsi01G002280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding