Lsi01G001970 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCGTGATTTGATAAATTACTGCTTTATGATTTGTAGCATTGTTTTGATGTTAGCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG ATGGGTCCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG ATGGGTCCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG MGPIGGGMPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQGSMDL Homology
BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17 Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10 Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09 Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08 Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A5A7UB41 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008560 PE=3 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 5.3e-29 Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A6J1C659 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111008788 PE=3 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 4.7e-25 Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A6J5VTZ1 (S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51617 PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 6.1e-25 Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A314XJ22 (S-protein homolog OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22175 PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 6.1e-25 Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 0
BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A5E4EKH7 (S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 8.0e-25 Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 0
BLAST of Lsi01G001970 vs. NCBI nr
Match: KAE8648119.1 (hypothetical protein Csa_004728 [Cucumis sativus]) HSP 1 Score: 144.4 bits (363), Expect = 6.9e-31 Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0
BLAST of Lsi01G001970 vs. NCBI nr
Match: KAG7034676.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30 Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 0
BLAST of Lsi01G001970 vs. NCBI nr
Match: KAA0052584.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK13240.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]) HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28 Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 0
BLAST of Lsi01G001970 vs. NCBI nr
Match: KAE8647731.1 (hypothetical protein Csa_003821 [Cucumis sativus]) HSP 1 Score: 134.8 bits (338), Expect = 5.5e-28 Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0
BLAST of Lsi01G001970 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus]) HSP 1 Score: 127.5 bits (319), Expect = 8.7e-26 Identity = 61/114 (53.51%), Postives = 68/114 (59.65%), Query Frame = 0
BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 ) HSP 1 Score: 96.3 bits (238), Expect = 2.0e-20 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0
BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18 Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Lsi01G001970 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 71.2 bits (173), Expect = 6.9e-13 Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 0
BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11 Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0
BLAST of Lsi01G001970 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10 Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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