Lsi01G001970 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	S-protein homolog
Location	chr01: 1868364 .. 1868816 (-)
RNA-Seq Expression	Lsi01G001970
Synteny	Lsi01G001970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTGATTTGATAAATTACTGCTTTATGATTTGTAGCATTGTTTTGATGTTAGCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG

mRNA sequence

ATGGGTCCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG

Coding sequence (CDS)

ATGGGTCCAATTGGAGGTGGAATGCCATGTTCATCAGCTTCTTTGAGAGGTTCAAAATACGAACATCCATTGAGTCAATGGAAAGTGGGGATCTCAAACGAGTTGGTGGGTCCTAACCAGACCCTAACCCTCCATTGCAAATCAAAAGACGACGATTTGGGTGAGCACAATCTCCAAGTTGGACAGAGCTTTGTTTGGGAATTCAAGGAGAATTTGATATCAACCACCCTTTATTGGTGCACCTTCAACACTCATCCTTTGAACTATCATGCTGAGTTCGAAGTGTTTTGGAGAGAGAAAGGTGATTGGCTTGCTTCCAGGTGCAATTTTAGGTTTTGCCTTTGGATTGCTCGGACTTCAGGCATTTATATTCAAAACATTGCTCAAGGTTCTATGGATCTG

Protein sequence

MGPIGGGMPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQGSMDL

Homology

[Close]

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-19
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 24  LSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFN 83
           +S+W+V + N L    +TL +HCKSK+DDLGE NL+    F W F EN++ +T +WC  N
Sbjct: 38  ISEWQVTVVNGLT-TGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMN 97

Query: 84  THPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQG 131
               N H    VFW +    L  RC ++ C+W A+T G+Y+ N A G
Sbjct: 98  KD--NGHMNVNVFWDDV--ILFHRCGWKNCIWTAKTDGLYLWNSASG 139

[Close]

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 24  LSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFN 83
           +S+W+V ++N L    +TL +HCKSK++DLG+ NL+    F W F EN++ +TL+WC  +
Sbjct: 38  ISEWQVTVANGLT-TGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMS 97

Query: 84  THPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQG 131
               + H   +VFW +    L  RC+++ C+W A+  G+Y+ N A G
Sbjct: 98  KD--DGHMNVKVFWDDV--ILFHRCDWKNCVWTAKNDGLYLWNSAIG 139

[Close]

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 23  PLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTF 82
           P S+  V I+N+L G   TL  HCKSKDDDLG   LQ G+S+ + F       TLY+C+F
Sbjct: 44  PTSKRTVEINNDL-GNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSF 103

Query: 83  NTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSG 122
            + P   H+ F+++   +     ++C    C+W  R +G
Sbjct: 104 -SWPNESHS-FDIYKDHRDSGGDNKCESDRCVWKIRRNG 139

[Close]

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 22 HPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCT 81
          +P ++  V ++N  + P  TLT+ C+SKDDDLGEH L  GQ+F+W+F+ +   TTL+ C 
Sbjct: 26 NPFAKTVVTVTNN-ISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCK 85

Query: 82 F 83
          F
Sbjct: 86 F 85

[Close]

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot
Match: F2Q9V4 (S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-08
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 42  LTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFNTHPLNYHAEFEVFWREKG 101
           L +HCKS+DDD G H LQ G  + W F  N +++TLY+C F+   +     F+++   K 
Sbjct: 44  LGVHCKSRDDDHGFHILQKGGLYGWMFYVNFMNSTLYFCGFSQEQVK-KGVFDIY---KA 103

Query: 102 DWLASRCNFRFCLWIARTSGIY 124
              +SRC  R C W A+  GIY
Sbjct: 104 VRDSSRC--RNCTWEAKEDGIY 119

[Close]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A5A7UB41 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008560 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.3e-29
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 15  LRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLIS 74
           L GSK   P S WKV + N+L  P Q+LT+HCKSKD+DLGEH+L+VG+ F W+FKENL S
Sbjct: 27  LGGSKTMPPFSSWKVVVFNQL-SPGQSLTVHCKSKDNDLGEHSLRVGEKFSWKFKENLFS 86

Query: 75  TTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIA 129
           TT +WC+  T         +VFW E+ DWLA RCN+  C+W+A+  GIYI N++
Sbjct: 87  TTRFWCSL-TSSSKKTVTMDVFWPERHDWLAYRCNYATCIWVAQDDGIYIVNVS 138

[Close]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A6J1C659 (S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111008788 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.7e-25
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 17  GSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTT 76
           GS  + P S W+V I N L G +  LT+HCKSKDDDLGEH ++    + W+FKEN   TT
Sbjct: 15  GSYRQWPGSHWQVTIRNYLKG-SANLTVHCKSKDDDLGEHVIEFRGRYEWKFKENFWQTT 74

Query: 77  LYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIAR-TSGIYIQNIAQGSMDL 135
           L+WC F +  +  HA  EVFW EK DWLA RC+F  C+W+AR   GIY+ ++ Q + +L
Sbjct: 75  LFWCNFKS--MYGHASGEVFWPEKSDWLAYRCDFSNCIWVARGDQGIYLAHVPQRTFEL 130

[Close]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A6J5VTZ1 (S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51617 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.1e-25
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 8   MPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWE 67
           +PC + S   +   +P+++W V + N++ G ++ L  HCKSKDDDLG  ++  G  F W 
Sbjct: 28  LPCHANSANQTNLGYPINKWVVHVVNQM-GASKALVAHCKSKDDDLGIRDVPPGNEFNWS 87

Query: 68  FKENLISTTLYWCTFNTHPLNYHAEFEVFWRE---KGDWLASRCNFRFCLWIARTSGIYI 127
           FKEN   TTL+WC  N H  + HA F+VFW E   K  WL  RCN++ C W+A+  GIYI
Sbjct: 88  FKENFGGTTLFWC--NIHNNHQHANFQVFWHEDETKSSWLHYRCNWKECFWVAKDDGIYI 147

Query: 128 QNIAQGSMDL 135
           +N  +   +L
Sbjct: 148 RNTPESRDEL 154

[Close]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A314XJ22 (S-protein homolog OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22175 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.1e-25
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 8   MPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWE 67
           +PC + S   +   +P+++W V + N++ G ++TL  HCKSKDDDLG  ++  G  F W 
Sbjct: 28  LPCHANSANQTNLGYPINKWVVHVVNQM-GASKTLVAHCKSKDDDLGIRDVLPGNEFNWR 87

Query: 68  FKENLISTTLYWCTFNTHPLNYHAEFEVFWRE---KGDWLASRCNFRFCLWIARTSGIYI 127
           FKEN   TTL+WC  N H  + HA F+VFW E   K  WL  RCN++ C W+ +  GIYI
Sbjct: 88  FKENFGGTTLFWC--NIHNNHQHANFQVFWHEDETKSSWLHYRCNWKECFWVVKDGGIYI 147

Query: 128 QNIAQGSMDL 135
           +N  +   +L
Sbjct: 148 RNTPESRDEL 154

[Close]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL
Match: A0A5E4EKH7 (S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.0e-25
Identity = 56/130 (43.08%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 8   MPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWE 67
           +P  + S   +   +P+++W V + N++ G ++TL  HCKSKDDDLG  ++  G  F W 
Sbjct: 28  LPYHANSANQTNLGYPINKWVVHVVNQM-GASKTLVAHCKSKDDDLGIRDVLPGNEFNWS 87

Query: 68  FKENLISTTLYWCTFNTHPLNYHAEFEVFWRE---KGDWLASRCNFRFCLWIARTSGIYI 127
           FKEN   TTL+WC  N H  + HA F+VFW E   K  WL  RCN++ C W+A+  GIYI
Sbjct: 88  FKENFGGTTLFWC--NIHNNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYI 147

Query: 128 QNIAQGSMDL 135
           +N  +G  +L
Sbjct: 148 RNTPEGRDEL 154

[Close]

BLAST of Lsi01G001970 vs. NCBI nr
Match: KAE8648119.1 (hypothetical protein Csa_004728 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 6.9e-31
Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 10  CSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFK 69
           CS+ S+  SKY    S W V I NEL   NQ L +HCKSKDD+LG+H ++ GQ++ W+FK
Sbjct: 139 CSAFSM-DSKYTPSFSHWTVAIINEL-SSNQQLFVHCKSKDDNLGDHTVESGQTYQWQFK 198

Query: 70  ENLISTTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIY 124
           EN + TTL+WCT  T P N H  FEVFWRE+G+WL SRCNFR C+W AR  G Y
Sbjct: 199 ENALETTLFWCTLRT-PKNLHHTFEVFWRERGEWLRSRCNFRACMWYARDDGFY 249

[Close]

BLAST of Lsi01G001970 vs. NCBI nr
Match: KAG7034676.1 (S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 17  GSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTT 76
           GSK   PLS+WKV I N+L  P QTL  HCKSK+DDLG+H LQVG+ + WEFKEN+ISTT
Sbjct: 11  GSKTMPPLSRWKVVIFNQL-NPGQTLLAHCKSKEDDLGDHLLQVGEQYSWEFKENVISTT 70

Query: 77  LYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQGSMDL 135
            +WCTF T  LN     +VFW E   WLA RCN   C+W+A+  G+Y+ NI +G  +L
Sbjct: 71  RFWCTFTT-SLNKRIVMDVFWPETHPWLAYRCNDYSCVWVAQDDGMYLTNIPEGKREL 126

[Close]

BLAST of Lsi01G001970 vs. NCBI nr
Match: KAA0052584.1 (pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK13240.1 pumilio-like protein 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 61/114 (53.51%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 15  LRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLIS 74
           L GSK   P S WKV + N+L  P Q+LT+HCKSKD+DLGEH+L+VG+ F W+FKENL S
Sbjct: 27  LGGSKTMPPFSSWKVVVFNQL-SPGQSLTVHCKSKDNDLGEHSLRVGEKFSWKFKENLFS 86

Query: 75  TTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIA 129
           TT +WC+  T         +VFW E+ DWLA RCN+  C+W+A+  GIYI N++
Sbjct: 87  TTRFWCSL-TSSSKKTVTMDVFWPERHDWLAYRCNYATCIWVAQDDGIYIVNVS 138

[Close]

BLAST of Lsi01G001970 vs. NCBI nr
Match: KAE8647731.1 (hypothetical protein Csa_003821 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-28
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 7   GMPCSSASLRGSKYEHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVW 66
           G PC      GSK   PLS+WKV I ++L  P + L +HCKSKD+DLGEH+LQV Q+F W
Sbjct: 46  GEPCWG----GSKTMAPLSRWKVVIFSQL-NPGENLLVHCKSKDNDLGEHSLQVSQNFSW 105

Query: 67  EFKENLISTTLYWCTFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQN 126
           +FKENL STTL+WCT  T         +VFW E+ +WLA RC++R C+W+A+  GIY+ N
Sbjct: 106 KFKENLFSTTLFWCTLTTSS-KKKVTMDVFWPERHNWLAIRCSYRTCIWVAQDDGIYLVN 159

[Close]

BLAST of Lsi01G001970 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.7e-26
Identity = 61/114 (53.51%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 21  EHPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWC 80
           E PLS WK+ I NE+     TL L CKSKDDDLG  NL V Q F W FKENL  TTLYWC
Sbjct: 27  EVPLSSWKINILNEMT--KDTLFLQCKSKDDDLGAQNLGVKQQFSWSFKENLWQTTLYWC 86

Query: 81  TFNTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQGSMDL 135
               H    HA F VFW EK  WLA RC  R C+W AR  GIY++     + +L
Sbjct: 87  YM--HNAESHASFNVFWPEKSGWLAFRCQLRNCIWSARDDGIYLKTNPHNTFEL 136

[Close]

BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-20
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 24  LSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFN 83
           +S+W+V + N L    +TL +HCKSK+DDLGE NL+    F W F EN++ +T +WC  N
Sbjct: 38  ISEWQVTVVNGLT-TGETLFIHCKSKEDDLGEINLKFRNRFSWNFGENMLHSTFFWCYMN 97

Query: 84  THPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQG 131
               N H    VFW +    L  RC ++ C+W A+T G+Y+ N A G
Sbjct: 98  KD--NGHMNVNVFWDDV--ILFHRCGWKNCIWTAKTDGLYLWNSASG 139

[Close]

BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 24  LSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFN 83
           +S+W+V ++N L    +TL +HCKSK++DLG+ NL+    F W F EN++ +TL+WC  +
Sbjct: 38  ISEWQVTVANGLT-TGETLFIHCKSKENDLGDINLKFLDRFSWNFGENMLHSTLFWCYMS 97

Query: 84  THPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIYIQNIAQG 131
               + H   +VFW +    L  RC+++ C+W A+  G+Y+ N A G
Sbjct: 98  KD--DGHMNVKVFWDDV--ILFHRCDWKNCVWTAKNDGLYLWNSAIG 139

[Close]

BLAST of Lsi01G001970 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 71.2 bits (173), Expect = 6.9e-13
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 22  HPLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCT 81
           H + + KV +SN+L   ++ L +HC+SKDDDLGEH L++GQ + + F +N+  TT + C 
Sbjct: 22  HEIGESKVVLSNQL-EHSKLLKVHCRSKDDDLGEHILKIGQDYEFTFGDNIWQTTSFSCQ 81

Query: 82  FNTHP-LNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSGIY 124
            +  P   +H +F  +   +  W  S+     C WI R  GIY
Sbjct: 82  MDQGPNFKHHLDFVAY---ETSW--SKALEASCKWIGREDGIY 118

[Close]

BLAST of Lsi01G001970 vs. TAIR 10
Match: AT4G16195.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 23  PLSQWKVGISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTF 82
           P S+  V I+N+L G   TL  HCKSKDDDLG   LQ G+S+ + F       TLY+C+F
Sbjct: 44  PTSKRTVEINNDL-GNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSF 103

Query: 83  NTHPLNYHAEFEVFWREKGDWLASRCNFRFCLWIARTSG 122
            + P   H+ F+++   +     ++C    C+W  R +G
Sbjct: 104 -SWPNESHS-FDIYKDHRDSGGDNKCESDRCVWKIRRNG 139

[Close]

BLAST of Lsi01G001970 vs. TAIR 10
Match: AT5G04347.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 31  ISNELVGPNQTLTLHCKSKDDDLGEHNLQVGQSFVWEFKENLISTTLYWCTFNTHP-LNY 90
           + NEL   N+ L + C+SKDD+LG+H L+VGQ     F +N+   TL+WC     P    
Sbjct: 26  VKNEL--NNKVLGVRCRSKDDNLGDHILRVGQMTKNNFDDNVWRRTLFWCNLWKGPDFKL 85

Query: 91  HAEFEVFWREKGDWLASRCNFRFCLWIARTSGIY 124
           H  F+ +   +  W A     R+ LWIAR  GIY
Sbjct: 86  HVAFDAY---RSQWKAD-IGPRY-LWIAREDGIY 112

The following BLAST results are available for this feature:

BLAST of Lsi01G001970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JLS0	2.8e-19	42.06	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]
Q2HQ46	5.9e-17	38.32	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F4JLQ5	1.8e-10	37.37	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
P0DN93	1.2e-09	45.90	S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1	[more]
F2Q9V4	2.2e-08	40.24	S-protein homolog 6 OS=Arabidopsis thaliana OX=3702 GN=SPH6 PE=3 SV=2	[more]

BLAST of Lsi01G001970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UB41	5.3e-29	53.51	S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00...	[more]
A0A6J1C659	4.7e-25	49.58	S-protein homolog OS=Momordica charantia OX=3673 GN=LOC111008788 PE=3 SV=1	[more]
A0A6J5VTZ1	6.1e-25	42.31	S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51617 PE=3 SV=1	[more]
A0A314XJ22	6.1e-25	42.31	S-protein homolog OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22175 PE=...	[more]
A0A5E4EKH7	8.0e-25	43.08	S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1	[more]

BLAST of Lsi01G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648119.1	6.9e-31	57.02	hypothetical protein Csa_004728 [Cucumis sativus]	[more]
KAG7034676.1	2.6e-30	55.93	S-protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0052584.1	1.1e-28	53.51	pumilio-like protein 15-like [Cucumis melo var. makuwa] >TYK13240.1 pumilio-like...	[more]
KAE8647731.1	5.5e-28	52.50	hypothetical protein Csa_003821 [Cucumis sativus]	[more]
XP_004136434.3	8.7e-26	53.51	S-protein homolog 1-like [Cucumis sativus]	[more]

BLAST of Lsi01G001970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16295.1	2.0e-20	42.06	S-protein homologue 1	[more]
AT4G29035.1	4.2e-18	38.32	Plant self-incompatibility protein S1 family	[more]
AT5G04350.1	6.9e-13	36.89	Plant self-incompatibility protein S1 family	[more]
AT4G16195.1	1.3e-11	37.37	Plant self-incompatibility protein S1 family	[more]
AT5G04347.1	4.2e-10	39.36	Plant self-incompatibility protein S1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..134
None	No IPR available	PANTHER	PTHR31232:SF34	PUTATIVE-RELATED	coord: 23..124
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 29..128 e-value: 9.6E-27 score: 93.6
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 23..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001970.1	Lsi01G001970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process