Lsi01G001720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G001720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr01: 1668479 .. 1669276 (-)
RNA-Seq Expression	Lsi01G001720
Synteny	Lsi01G001720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCATCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTATGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGACTCGACTACTTGGGGAACCCAAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGGGAGATCACTGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA

mRNA sequence

ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCATCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTATGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGACTCGACTACTTGGGGAACCCAAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGGGAGATCACTGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA

Coding sequence (CDS)

ATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCTGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCATCCTACCTCACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTATGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGACTCGACTACTTGGGGAACCCAAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTCGTGTTGATGGGCGCCGTCGAGGGCTACCGTATTGCCGGCGGCCCACTCGGGGAGATCACTGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCCACAAACTTTGTTCCCGGAAAGTGA

Protein sequence

MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot
Match: P09756 (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.3e-145
Identity = 251/264 (95.08%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 2   AASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPF 61
           AAS+MALSSPSLAGKAVKL P+ PE+   GRVSMRKT +KQVSSGSPWYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 62  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
           SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122

Query: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPL 181
           GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV+LMGAVEGYRIAGGPL
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 182

Query: 182 GEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
           GE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 242 LADHLADPVNNNAWAYATNFVPGK 266
           LADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot
Match: P08221 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 1.5e-144
Identity = 244/255 (95.69%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 11  PSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLT 70
           P+LAG+AVKLSPN PEIQGN + +MRKTASK VSSGSPWYGPDRVKYLGPFSGEPPSYLT
Sbjct: 1   PTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT 60

Query: 71  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 130
           GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW
Sbjct: 61  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 120

Query: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYP 190
           FKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGPLGE+TDPIYP
Sbjct: 121 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180

Query: 191 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250
           GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct: 181 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240

Query: 251 NNNAWAYATNFVPGK 266
           NNNAWAYATNFVPGK
Sbjct: 241 NNNAWAYATNFVPGK 255

[Close]

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 1.6e-143
Identity = 242/265 (91.32%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKLSP+ PEI GNGRVSMRKT +K V+S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 2.8e-143
Identity = 246/267 (92.13%), Postives = 257/267 (96.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTAS--KQVSSGSPWYGPDRVKYL 60
           MAASTMALSSPS AGKAVKLSP++ EI GNG+V+MRKTAS  K VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.4e-141
Identity = 243/267 (91.01%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTA--SKQVSSGSPWYGPDRVKYL 60
           MA STMALSS + AGKAVKLSP++ EI GNGRV+MRKTA  +K  SSGSPWYGPDRVKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL
Match: A0A6J1IQ16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478894 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 7.8e-149
Identity = 260/265 (98.11%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNTP+IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTPDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL
Match: A0A6J1EJV8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433272 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 7.8e-149
Identity = 260/265 (98.11%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNTP+IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTPDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL
Match: A0A6J1EGW9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433271 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.0e-148
Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAV LSPNTP+IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVNLSPNTPDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL
Match: A0A6J1IN31 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478895 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 6.6e-148
Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNT +IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTTDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL
Match: A0A5D3CNU3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008830 PE=3 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 256/265 (96.60%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPN PEIQG GR++MRKTA+K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. NCBI nr
Match: XP_038882052.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 540.0 bits (1390), Expect = 1.1e-149
Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. NCBI nr
Match: XP_038882053.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 537.7 bits (1384), Expect = 5.5e-149
Identity = 260/265 (98.11%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPN PEIQGNGR+SMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGNGRISMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. NCBI nr
Match: XP_022926035.1 (chlorophyll a-b binding protein of LHCII type 1 [Cucurbita moschata] >XP_022979176.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima] >XP_023545170.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita pepo subsp. pepo] >KAG6581413.1 hypothetical protein SDJN03_21415, partial [Cucurbita argyrosperma subsp. sororia] >KAG6581414.1 hypothetical protein SDJN03_21416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 536.2 bits (1380), Expect = 1.6e-148
Identity = 260/265 (98.11%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNTP+IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTPDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. NCBI nr
Match: XP_022926033.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata])

HSP 1 Score: 534.3 bits (1375), Expect = 6.1e-148
Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAV LSPNTP+IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVNLSPNTPDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. NCBI nr
Match: XP_022979177.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 259/265 (97.74%), Postives = 261/265 (98.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLSPNT +IQGN RVSMRKTASK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNTTDIQGNARVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180

Query: 181 LGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGE+ DPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Lsi01G001720 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-137
Identity = 235/266 (88.35%), Postives = 248/266 (93.23%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSP+L GKAVKLSP   E+ G GR++MRK +     SGSPWYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG-G 180
           NGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG G
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 266
           ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Lsi01G001720 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 484.2 bits (1245), Expect = 6.8e-137
Identity = 236/267 (88.39%), Postives = 251/267 (94.01%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASK-QVSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAVKLSP   E+ G+GRV+MRKT +K +  SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi01G001720 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-136
Identity = 235/267 (88.01%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASK-QVSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV LSP   E+ G+GRV+MRKT +K +  SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi01G001720 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-136
Identity = 235/267 (88.01%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASK-QVSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV LSP   E+ G+GRV+MRKT +K +  SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Lsi01G001720 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 477.6 bits (1228), Expect = 6.3e-135
Identity = 234/267 (87.64%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTASK-QVSSGSPWYGPDRVKYLG 60
           MA+STMALSSP+ AGKAVK  P   ++ G+GRV+MRKT +K +  SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of Lsi01G001720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09756	1.3e-145	95.08	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 ...	[more]
P08221	1.5e-144	95.69	Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cuc...	[more]
P27493	1.6e-143	91.32	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27495	2.8e-143	92.13	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P07369	3.4e-141	91.01	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of Lsi01G001720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ16	7.8e-149	98.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EJV8	7.8e-149	98.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1EGW9	3.0e-148	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IN31	6.6e-148	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3CNU3	1.5e-147	96.60	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Lsi01G001720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882052.1	1.1e-149	98.87	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_038882053.1	5.5e-149	98.11	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_022926035.1	1.6e-148	98.11	chlorophyll a-b binding protein of LHCII type 1 [Cucurbita moschata] >XP_0229791...	[more]
XP_022926033.1	6.1e-148	97.74	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata]	[more]
XP_022979177.1	1.4e-147	97.74	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima]	[more]

BLAST of Lsi01G001720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34430.1	1.4e-137	88.35	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT1G29930.1	6.8e-137	88.39	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	2.6e-136	88.01	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	2.6e-136	88.01	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	6.3e-135	87.64	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 56..258 e-value: 7.0E-91 score: 305.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..231 e-value: 1.7E-49 score: 168.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..265
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..262
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G001720.1	Lsi01G001720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding