Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA
mRNA sequence
ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA
Coding sequence (CDS)
ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA
Protein sequence
MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPTPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKVKNQRSLPLSTNNNHK
Homology
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match:
A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MIPIKS AAIVAF LI +IAA EIRPSEHGLEFQSPPP GDKSSPEMRSFFGGI+SPT
Sbjct: 1 MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALP+PKT+NSSESPGWW H DGG+KRL+ ALLVATAACG+TGVTLLVGSTLFYI+K
Sbjct: 61 PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFKA 120
Query: 122 KNQRSLPLSTNNNHK 137
KN+RS+PLS NNNHK
Sbjct: 121 KNKRSMPLSPNNNHK 135
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match:
A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 1 MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSP 60
M+IPIK VAA+V FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF G SSP
Sbjct: 57 MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116
Query: 61 TPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYK 120
P+ LPLPK MNSSE+PGWWTHRDGG+KR++ ALLVATAACG+TGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176
Query: 121 VKNQRSLPLSTNNNHK 137
VKNQ LPLS+NNNHK
Sbjct: 177 VKNQTPLPLSSNNNHK 192
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match:
A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 8.9e-56
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MI IKS+AA+ +L IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1 MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61 PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120
Query: 122 KNQRSLPLSTNNNH 136
KNQRSLPLS+NNN+
Sbjct: 121 KNQRSLPLSSNNNN 134
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match:
A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)
HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MI IKS+AA+ +L IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPT
Sbjct: 1 MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61 PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
Query: 122 KNQRSLPLSTNN-NHK 137
KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match:
A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 5.4e-53
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAA----ALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGI 61
MIPIK AA+ LPLIVA+ A ALEIRPSEHGLEFQSPPPAGDKSSPEM SFFGG
Sbjct: 1 MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGR 60
Query: 62 SSPTPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFY 121
SSPTP+ ALPLPK MNSSE+PGWWT RDGGD RL+ ALLVATAA G+TGVTLLVGS LFY
Sbjct: 61 SSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFY 120
Query: 122 IYKVKNQRSLPLSTNNNHK 137
+YKVKNQRSLPLS+NNNHK
Sbjct: 121 VYKVKNQRSLPLSSNNNHK 139
BLAST of Lsi01G000810 vs. NCBI nr
Match:
XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])
HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 1 MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSP 60
M+IPIK VAA+V FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF G SSP
Sbjct: 57 MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116
Query: 61 TPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYK 120
P+ LPLPK MNSSE+PGWWTHRDGG+KR++ ALLVATAACG+TGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176
Query: 121 VKNQRSLPLSTNNNHK 137
VKNQ LPLS+NNNHK
Sbjct: 177 VKNQTPLPLSSNNNHK 192
BLAST of Lsi01G000810 vs. NCBI nr
Match:
XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 228.8 bits (582), Expect = 2.8e-56
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MI IKS+AA+ +L IVAIAAALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1 MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61 PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
Query: 122 KNQRSLPLSTNN-NHK 137
KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136
BLAST of Lsi01G000810 vs. NCBI nr
Match:
XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])
HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MI IKS+AA+ +L IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1 MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61 PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120
Query: 122 KNQRSLPLSTNNNH 136
KNQRSLPLS+NNN+
Sbjct: 121 KNQRSLPLSSNNNN 134
BLAST of Lsi01G000810 vs. NCBI nr
Match:
XP_022926736.1 (uncharacterized protein LOC111433768 [Cucurbita moschata])
HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 0
Query: 2 MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
MI IKS+AA+ +L IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPT
Sbjct: 1 MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60
Query: 62 PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61 PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120
Query: 122 KNQRSLPLSTNN-NHK 137
KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136
BLAST of Lsi01G000810 vs. NCBI nr
Match:
KAG6594423.1 (hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 217.6 bits (553), Expect = 6.5e-53
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0
Query: 8 VAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPTPEVALP 67
+AA+ +L IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPTPEVALP
Sbjct: 1 MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPTPEVALP 60
Query: 68 LPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKVKNQRSL 127
LPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KVKNQRSL
Sbjct: 61 LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSL 120
Query: 128 PLSTNN-NHK 137
PLS+NN NHK
Sbjct: 121 PLSSNNSNHK 130
BLAST of Lsi01G000810 vs. TAIR 10
Match:
AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 0
Query: 12 VAFLPLIVAIAAALEIRPSEHGLEFQ-SPPPAGDKSSP-EMRSFFGG--ISSPTPEVALP 71
+ FL + + A E+RPS+HGL++Q S PP S P +M+SFFG SSP P
Sbjct: 20 ITFLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQL 79
Query: 72 LPK--TMNSSESPGWWTHRDGG----DKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 131
LPK + + WW RDG D ++ L A+ CGV+GV LLV TL Y ++
Sbjct: 80 LPKATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFRY 139
Query: 132 KNQRSLPLSTNNNHK 137
+ T N+ K
Sbjct: 140 RKHNHSNSPTGNDSK 152
BLAST of Lsi01G000810 vs. TAIR 10
Match:
AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 49.7 bits (117), Expect = 2.2e-06
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 0
Query: 11 IVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFG--------GISSPTP 70
I+ + L I A E+RPS+HGLE+ P S EM SFFG ISSP+
Sbjct: 17 IMFIIVLESTIINARELRPSDHGLEYYYEP----GESSEMTSFFGPPSSNDLTSISSPSS 76
Query: 71 EVALPLPKTMNSSESPGWWTHRDGGDKR-LKKALLVATAACGVTGVTLLVGSTLFYIYKV 130
+ LP + +SP +D D R + L+V + CG++GV L+V S L Y
Sbjct: 77 SI---LPSAV---KSPMKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIYFLGY 136
Query: 131 KNQRSLPLSTNNNH 136
++ ++ ++ H
Sbjct: 137 PKTQNSSVNCDHIH 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KM65 | 1.0e-56 | 83.70 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1 | [more] |
A0A6J1EFW4 | 1.0e-56 | 83.09 | uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330... | [more] |
A0A6J1KMY3 | 8.9e-56 | 85.07 | uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130... | [more] |
A0A6J1EFQ9 | 2.0e-55 | 85.29 | uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337... | [more] |
A0A6J1CZN3 | 5.4e-53 | 80.58 | uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
Match Name | E-value | Identity | Description | |
XP_022925668.1 | 2.2e-56 | 83.09 | uncharacterized protein LOC111433017 [Cucurbita moschata] | [more] |
XP_023518243.1 | 2.8e-56 | 86.03 | uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo] | [more] |
XP_023003567.1 | 1.8e-55 | 85.07 | uncharacterized protein LOC111497130 [Cucurbita maxima] | [more] |
XP_022926736.1 | 4.1e-55 | 85.29 | uncharacterized protein LOC111433768 [Cucurbita moschata] | [more] |
KAG6594423.1 | 6.5e-53 | 85.38 | hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
AT4G21740.1 | 2.7e-12 | 37.04 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT1G30515.1 | 2.2e-06 | 32.09 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |