Lsi01G000810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G000810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 797554 .. 797964 (+)
RNA-Seq ExpressionLsi01G000810
SyntenyLsi01G000810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA

mRNA sequence

ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA

Coding sequence (CDS)

ATGATGATTCCGATCAAATCAGTAGCGGCGATCGTCGCGTTCTTGCCATTGATCGTGGCGATCGCGGCAGCGCTGGAGATACGGCCGTCGGAGCATGGTTTGGAGTTTCAGAGCCCTCCACCGGCGGGAGACAAATCGTCGCCGGAGATGCGATCTTTTTTCGGAGGAATATCGTCGCCGACACCGGAAGTGGCATTGCCGTTGCCGAAGACGATGAATTCGAGCGAGTCGCCAGGATGGTGGACCCACCGTGACGGTGGAGATAAACGACTAAAAAAGGCATTATTGGTGGCGACGGCGGCTTGTGGAGTTACAGGTGTCACTTTACTAGTGGGTTCTACGTTATTCTACATTTATAAGGTCAAAAATCAAAGATCATTGCCGTTATCTACAAATAATAATCACAAATAA

Protein sequence

MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPTPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKVKNQRSLPLSTNNNHK
Homology
BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MIPIKS AAIVAF  LI +IAA  EIRPSEHGLEFQSPPP GDKSSPEMRSFFGGI+SPT
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALP+PKT+NSSESPGWW H DGG+KRL+ ALLVATAACG+TGVTLLVGSTLFYI+K 
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFKA 120

Query: 122 KNQRSLPLSTNNNHK 137
           KN+RS+PLS NNNHK
Sbjct: 121 KNKRSMPLSPNNNHK 135

BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0

Query: 1   MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSP 60
           M+IPIK VAA+V FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF G SSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  TPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYK 120
            P+  LPLPK MNSSE+PGWWTHRDGG+KR++ ALLVATAACG+TGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

Query: 121 VKNQRSLPLSTNNNHK 137
           VKNQ  LPLS+NNNHK
Sbjct: 177 VKNQTPLPLSSNNNHK 192

BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.9e-56
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MI IKS+AA+  +L  IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

Query: 122 KNQRSLPLSTNNNH 136
           KNQRSLPLS+NNN+
Sbjct: 121 KNQRSLPLSSNNNN 134

BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.0e-55
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MI IKS+AA+  +L  IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 122 KNQRSLPLSTNN-NHK 137
           KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Lsi01G000810 vs. ExPASy TrEMBL
Match: A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.4e-53
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAA----ALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGI 61
           MIPIK  AA+   LPLIVA+ A    ALEIRPSEHGLEFQSPPPAGDKSSPEM SFFGG 
Sbjct: 1   MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGR 60

Query: 62  SSPTPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFY 121
           SSPTP+ ALPLPK MNSSE+PGWWT RDGGD RL+ ALLVATAA G+TGVTLLVGS LFY
Sbjct: 61  SSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFY 120

Query: 122 IYKVKNQRSLPLSTNNNHK 137
           +YKVKNQRSLPLS+NNNHK
Sbjct: 121 VYKVKNQRSLPLSSNNNHK 139

BLAST of Lsi01G000810 vs. NCBI nr
Match: XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0

Query: 1   MMIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSP 60
           M+IPIK VAA+V FLPLIVA+A+ALEIRPSEHGLEFQSPPPAG+KSSPEMRSFF G SSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  TPEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYK 120
            P+  LPLPK MNSSE+PGWWTHRDGG+KR++ ALLVATAACG+TGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

Query: 121 VKNQRSLPLSTNNNHK 137
           VKNQ  LPLS+NNNHK
Sbjct: 177 VKNQTPLPLSSNNNHK 192

BLAST of Lsi01G000810 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 2.8e-56
Identity = 117/136 (86.03%), Postives = 126/136 (92.65%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MI IKS+AA+  +L  IVAIAAALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 122 KNQRSLPLSTNN-NHK 137
           KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Lsi01G000810 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 114/134 (85.07%), Postives = 124/134 (92.54%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MI IKS+AA+  +L  IVAI AALEIRPSEHGLEFQSPP AGDKSSPEMRSFFGG SSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFKV 120

Query: 122 KNQRSLPLSTNNNH 136
           KNQRSLPLS+NNN+
Sbjct: 121 KNQRSLPLSSNNNN 134

BLAST of Lsi01G000810 vs. NCBI nr
Match: XP_022926736.1 (uncharacterized protein LOC111433768 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 4.1e-55
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 0

Query: 2   MIPIKSVAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPT 61
           MI IKS+AA+  +L  IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPT
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PEVALPLPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 121
           PEVALPLPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KV
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKV 120

Query: 122 KNQRSLPLSTNN-NHK 137
           KNQRSLPLS+NN NHK
Sbjct: 121 KNQRSLPLSSNNSNHK 136

BLAST of Lsi01G000810 vs. NCBI nr
Match: KAG6594423.1 (hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.6 bits (553), Expect = 6.5e-53
Identity = 111/130 (85.38%), Postives = 120/130 (92.31%), Query Frame = 0

Query: 8   VAAIVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFGGISSPTPEVALP 67
           +AA+  +L  IVAIAAALEIRPSEHGLEFQS P AGDKSSPEMRSFFGG SSPTPEVALP
Sbjct: 1   MAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPTPEVALP 60

Query: 68  LPKTMNSSESPGWWTHRDGGDKRLKKALLVATAACGVTGVTLLVGSTLFYIYKVKNQRSL 127
           LPK MNSSE+PGWWTHRDGGDKRL+ ALLVATAACG+TGVTLLVGSTL+YI+KVKNQRSL
Sbjct: 61  LPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFKVKNQRSL 120

Query: 128 PLSTNN-NHK 137
           PLS+NN NHK
Sbjct: 121 PLSSNNSNHK 130

BLAST of Lsi01G000810 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 0

Query: 12  VAFLPLIVAIAAALEIRPSEHGLEFQ-SPPPAGDKSSP-EMRSFFGG--ISSPTPEVALP 71
           + FL +    + A E+RPS+HGL++Q S PP    S P +M+SFFG    SSP P     
Sbjct: 20  ITFLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQL 79

Query: 72  LPK--TMNSSESPGWWTHRDGG----DKRLKKALLVATAACGVTGVTLLVGSTLFYIYKV 131
           LPK    +  +   WW  RDG     D  ++   L A+  CGV+GV LLV  TL Y ++ 
Sbjct: 80  LPKATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFRY 139

Query: 132 KNQRSLPLSTNNNHK 137
           +        T N+ K
Sbjct: 140 RKHNHSNSPTGNDSK 152

BLAST of Lsi01G000810 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-06
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 11  IVAFLPLIVAIAAALEIRPSEHGLEFQSPPPAGDKSSPEMRSFFG--------GISSPTP 70
           I+  + L   I  A E+RPS+HGLE+   P      S EM SFFG         ISSP+ 
Sbjct: 17  IMFIIVLESTIINARELRPSDHGLEYYYEP----GESSEMTSFFGPPSSNDLTSISSPSS 76

Query: 71  EVALPLPKTMNSSESPGWWTHRDGGDKR-LKKALLVATAACGVTGVTLLVGSTLFYIYKV 130
            +   LP  +   +SP     +D  D R +   L+V +  CG++GV L+V S L Y    
Sbjct: 77  SI---LPSAV---KSPMKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIYFLGY 136

Query: 131 KNQRSLPLSTNNNH 136
              ++  ++ ++ H
Sbjct: 137 PKTQNSSVNCDHIH 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KM651.0e-5683.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1[more]
A0A6J1EFW41.0e-5683.09uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330... [more]
A0A6J1KMY38.9e-5685.07uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130... [more]
A0A6J1EFQ92.0e-5585.29uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337... [more]
A0A6J1CZN35.4e-5380.58uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
XP_022925668.12.2e-5683.09uncharacterized protein LOC111433017 [Cucurbita moschata][more]
XP_023518243.12.8e-5686.03uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo][more]
XP_023003567.11.8e-5585.07uncharacterized protein LOC111497130 [Cucurbita maxima][more]
XP_022926736.14.1e-5585.29uncharacterized protein LOC111433768 [Cucurbita moschata][more]
KAG6594423.16.5e-5385.38hypothetical protein SDJN03_10976, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT4G21740.12.7e-1237.04unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G30515.12.2e-0632.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..53
NoneNo IPR availablePANTHERPTHR37189:SF4CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..132
NoneNo IPR availablePANTHERPTHR37189CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 5..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G000810.1Lsi01G000810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane