Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGAGGATGGATTGAGCAAAAGTCTAAAGTAGATAAAAGATACAGCAAAGCCAACGGTCAGAAGATTTGAAAAAGATGCAATCAATACCCCTTTTCCCAAACACTCCATACCCGATCCACAAATCACAAATCACAAATCCAAGAATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCTCCGCCGCTGCCGCCACCACCTCCGCCGCCGTGCCACTGCTGCACTTGCCCCTGCTCCTCCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGCACATTTCCGCCATCTTCAACGCAATCGGAACGTCCTGACGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAGTACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTTCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGCGTTGGTGATTTGGGAATTAGGTTAATTCGATGTTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAAGTGATTTTGATTCTGAAATTCGATTCTCTTATGCGTGGATTTTTCATTTCTGTAGAGTTGTCTGGATTTTACTTTCCATTTCTGCTGCTGAAATTTCTTGAACGTGAAGATATTTTAGTCAATAGTATAATATTGTATTTTTGTTTTCTGCTTAA
mRNA sequence
GTTTTGAGGATGGATTGAGCAAAAGTCTAAAGTAGATAAAAGATACAGCAAAGCCAACGGTCAGAAGATTTGAAAAAGATGCAATCAATACCCCTTTTCCCAAACACTCCATACCCGATCCACAAATCACAAATCACAAATCCAAGAATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCTCCGCCGCTGCCGCCACCACCTCCGCCGCCGTGCCACTGCTGCACTTGCCCCTGCTCCTCCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGCACATTTCCGCCATCTTCAACGCAATCGGAACGTCCTGACGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAGTACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTTCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGCGTTGGTGATTTGGGAATTAGGTTAATTCGATGTTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAAGTGATTTTGATTCTGAAATTCGATTCTCTTATGCGTGGATTTTTCATTTCTGTAGAGTTGTCTGGATTTTACTTTCCATTTCTGCTGCTGAAATTTCTTGAACGTGAAGATATTTTAGTCAATAGTATAATATTGTATTTTTGTTTTCTGCTTAA
Coding sequence (CDS)
ATGCAATCAATACCCCTTTTCCCAAACACTCCATACCCGATCCACAAATCACAAATCACAAATCCAAGAATGCTCAAGGCCGCCAAGAAGAAACTCAAATTCTGGTCCAAGAACAAGAAGCGAAAGAAAATCCACAATCACAATCCCTACCTTTTCCCTCCTCCGCCGCTGCCGCCACCACCTCCGCCGCCGTGCCACTGCTGCACTTGCCCCTGCTCCTCCGCAATCCAGCCCTCTGCTCCGCCACTTCCGCCATGGCTAGACGATCGCACATTTCCGCCATCTTCAACGCAATCGGAACGTCCTGACGAAGCCGAAATCGCAGCGCCGCTCGTGGCCGATCCGTCGTACCAGCAGTACATGGCTCCGAATCCGGTCTACGGAGTTCCGATGATCGTGCAAAGCGGTTTCAGAAGAGAGAGATCGTTCGCTAGTTTCGGATGCGTTGGTGATTTGGGAATTAGGTTAATTCGATGTTTCTGTCCCTGTTTTCGCATTCGAGAAGCTTATTACATACGCCAGTAA
Protein sequence
MQSIPLFPNTPYPIHKSQITNPRMLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCSSAIQPSAPPLPPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFCPCFRIREAYYIRQ
Homology
BLAST of Lcy13g015800 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.8e-46
Identity = 103/150 (68.67%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCSSAIQPSAPPL 83
MLKAAKKKLKFWS++KKRKKI N N + PPPCHCCTC CSSAIQPSAPPL
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-----------PPPCHCCTCHCSSAIQPSAPPL 60
Query: 84 PPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFRRE--- 143
PPWLDDR FPP SE P+EAEIAAPLVA P YQ YM P+PVYGVP+IVQ+ RR+
Sbjct: 61 PPWLDDRIFPP----SEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSR 120
Query: 144 -RSFASFGCVGDLGIRLIRCFCPCFRIREA 170
R FA GCVG+LGIR+I CFCPCFR EA
Sbjct: 121 SRRFAVSGCVGELGIRIIGCFCPCFRTPEA 135
BLAST of Lcy13g015800 vs. ExPASy TrEMBL
Match:
A0A6J1DM77 (uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022295 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 3.4e-28
Identity = 86/151 (56.95%), Postives = 99/151 (65.56%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCS-SAIQPSAPP 83
MLKAA KKLKFWSK+KKR+K + + LPPPPPP C+C CS SAI+PSAPP
Sbjct: 1 MLKAA-KKLKFWSKDKKRRKTRDSS-------YLPPPPPP---YCSCSCSYSAIRPSAPP 60
Query: 84 LPPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFR-RER 143
LPPWLDDRT QSE P A + A SYQQY APNPVYG+P++ R RER
Sbjct: 61 LPPWLDDRTL---LLQSEPP----AATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRER 120
Query: 144 SFASFGCVGDLGIRLIRCFCPCFRIREAYYI 173
S + DLG RLIRCFCPC +REAYY+
Sbjct: 121 SLFT-----DLGARLIRCFCPCLHVREAYYL 128
BLAST of Lcy13g015800 vs. ExPASy TrEMBL
Match:
A0A6P6GE81 (formin-like protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC112492589 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 87/186 (46.77%), Postives = 105/186 (56.45%), Query Frame = 0
Query: 8 PNTPYPIHKSQITNPRMLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPP--C 67
P+ H + R + A KKLKFWS+ K++KK H + Y PPPP PPPPPPP
Sbjct: 11 PSVFQRFHGDALLPSRNMIKAVKKLKFWSRKKRKKKTH-QSYYSPPPPPYPPPPPPPPRS 70
Query: 68 HCCTCPCSSAIQPSAPPLPP-WLDD----RTF------PPSSTQS----ERPDEAEI--- 127
HCC SS+ QPSAPPLPP W D TF PP+ S +P+E +
Sbjct: 71 HCCCSCYSSSTQPSAPPLPPSWFDSDLTHDTFLGPGVHPPAPESSFPNPNQPEEIVLDST 130
Query: 128 AAPLV-----ADPSYQQYMAPNPVYGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFCP 169
PL ++ SYQQYM PNPVYG+P V RRE+S FGCV + GI LIRCF P
Sbjct: 131 TTPLYPTLPESNSSYQQYMVPNPVYGIP--VSQTSRREKSGGIFGCVVNFGIHLIRCFVP 190
BLAST of Lcy13g015800 vs. ExPASy TrEMBL
Match:
A0A6P6GL92 (leucine-rich repeat extensin-like protein 6 OS=Ziziphus jujuba OX=326968 GN=LOC112493398 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 87/187 (46.52%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 8 PNTPYPIHKSQITNPRMLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPP--- 67
P+ H + R + A KKLKFWS+ K++KK H + Y PPPP PPPPPPP
Sbjct: 11 PSVFQRFHGDALLPSRNMIKAVKKLKFWSRKKRKKKTH-QSYYSPPPPPYPPPPPPPPPR 70
Query: 68 CHCCTCPCSSAIQPSAPPLPP-WLDD----RTF------PPSSTQS----ERPDEAEI-- 127
HCC SS+ QPSAPPLPP W D TF PP+ S +P+E +
Sbjct: 71 SHCCCSCYSSSTQPSAPPLPPSWFDSDLTHDTFLGPGVHPPAPESSFPNPNQPEEIVLDS 130
Query: 128 -AAPLV-----ADPSYQQYMAPNPVYGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFC 169
PL ++ SYQQYM PNPVYG+P V RRE+S FGCV + GI LIRCF
Sbjct: 131 TTTPLYPTLPESNSSYQQYMVPNPVYGIP--VSQTSRREKSGGIFGCVVNFGIHLIRCFV 190
BLAST of Lcy13g015800 vs. ExPASy TrEMBL
Match:
A0A6J5TV75 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10488 PE=4 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 3.6e-25
Identity = 84/179 (46.93%), Postives = 98/179 (54.75%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPP---PPPPPCHCCTCPCSS-AIQPS 83
M+KA KKLKFWS+ K++KK H+H PY PPPP P PP P HCC+C S+ + QPS
Sbjct: 1 MIKAV-KKLKFWSRKKRKKKTHHHQPYYPPPPPTRPAPLPPGPRHHCCSCSSSTYSTQPS 60
Query: 84 APPLPPWLD-----DRTFPPSSTQSERPDEAEIAAPLVADP------------------S 143
APPLPPWLD + F P P+ A P +P S
Sbjct: 61 APPLPPWLDSEYTHEALFAP--LVQPAPEFGYQADPRQQEPTMKTNAGSGTTSIYPTSSS 120
Query: 144 YQQYMAPNPVYGVPMI-----VQSGFRRERSFAS--FGCVGDLGIRLIRCFCPCFRIRE 169
YQQYM P+PVYGVP+ R ERS A+ FGCV D GIR RCFCPCF IRE
Sbjct: 121 YQQYMVPDPVYGVPVAQTQTQTTRATRTERSAAAGVFGCVVDFGIRFFRCFCPCFHIRE 176
BLAST of Lcy13g015800 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 198.7 bits (504), Expect = 4.0e-47
Identity = 105/150 (70.00%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCSSAIQPSAPPL 83
MLKAAKKKLKFWS++KKRKKI + N + PPPPPPCHCCTC CSSAIQPSAPPL
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDF-------TPPPPPPCHCCTCHCSSAIQPSAPPL 60
Query: 84 PPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFRRE--- 143
PPWLDDR FPP E P+EAEIAAPLVA P YQQYM P+PVYGVP+IVQ+ RR+
Sbjct: 61 PPWLDDRIFPP----PEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSR 120
Query: 144 -RSFASFGCVGDLGIRLIRCFCPCFRIREA 170
R FA GCVGDLGIR+I CFCPCFR +A
Sbjct: 121 SRRFAVSGCVGDLGIRIIGCFCPCFRTPKA 139
BLAST of Lcy13g015800 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 194.9 bits (494), Expect = 5.8e-46
Identity = 103/150 (68.67%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCSSAIQPSAPPL 83
MLKAAKKKLKFWS++KKRKKI N N + PPPCHCCTC CSSAIQPSAPPL
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-----------PPPCHCCTCHCSSAIQPSAPPL 60
Query: 84 PPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFRRE--- 143
PPWLDDR FPP SE P+EAEIAAPLVA P YQ YM P+PVYGVP+IVQ+ RR+
Sbjct: 61 PPWLDDRIFPP----SEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSR 120
Query: 144 -RSFASFGCVGDLGIRLIRCFCPCFRIREA 170
R FA GCVG+LGIR+I CFCPCFR EA
Sbjct: 121 SRRFAVSGCVGELGIRIIGCFCPCFRTPEA 135
BLAST of Lcy13g015800 vs. NCBI nr
Match:
XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])
HSP 1 Score: 134.8 bits (338), Expect = 7.1e-28
Identity = 86/151 (56.95%), Postives = 99/151 (65.56%), Query Frame = 0
Query: 24 MLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCS-SAIQPSAPP 83
MLKAA KKLKFWSK+KKR+K + + LPPPPPP C+C CS SAI+PSAPP
Sbjct: 1 MLKAA-KKLKFWSKDKKRRKTRDSS-------YLPPPPPP---YCSCSCSYSAIRPSAPP 60
Query: 84 LPPWLDDRTFPPSSTQSERPDEAEIAAPLVADPSYQQYMAPNPVYGVPMIVQSGFR-RER 143
LPPWLDDRT QSE P A + A SYQQY APNPVYG+P++ R RER
Sbjct: 61 LPPWLDDRTL---LLQSEPP----AATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRER 120
Query: 144 SFASFGCVGDLGIRLIRCFCPCFRIREAYYI 173
S + DLG RLIRCFCPC +REAYY+
Sbjct: 121 SLFT-----DLGARLIRCFCPCLHVREAYYL 128
BLAST of Lcy13g015800 vs. NCBI nr
Match:
XP_024932440.1 (formin-like protein 5 [Ziziphus jujuba] >XP_024932441.1 formin-like protein 5 [Ziziphus jujuba] >XP_024932442.1 formin-like protein 5 [Ziziphus jujuba])
HSP 1 Score: 125.6 bits (314), Expect = 4.3e-25
Identity = 87/186 (46.77%), Postives = 105/186 (56.45%), Query Frame = 0
Query: 8 PNTPYPIHKSQITNPRMLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPP--C 67
P+ H + R + A KKLKFWS+ K++KK H + Y PPPP PPPPPPP
Sbjct: 11 PSVFQRFHGDALLPSRNMIKAVKKLKFWSRKKRKKKTH-QSYYSPPPPPYPPPPPPPPRS 70
Query: 68 HCCTCPCSSAIQPSAPPLPP-WLDD----RTF------PPSSTQS----ERPDEAEI--- 127
HCC SS+ QPSAPPLPP W D TF PP+ S +P+E +
Sbjct: 71 HCCCSCYSSSTQPSAPPLPPSWFDSDLTHDTFLGPGVHPPAPESSFPNPNQPEEIVLDST 130
Query: 128 AAPLV-----ADPSYQQYMAPNPVYGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFCP 169
PL ++ SYQQYM PNPVYG+P V RRE+S FGCV + GI LIRCF P
Sbjct: 131 TTPLYPTLPESNSSYQQYMVPNPVYGIP--VSQTSRREKSGGIFGCVVNFGIHLIRCFVP 190
BLAST of Lcy13g015800 vs. NCBI nr
Match:
XP_024934899.1 (leucine-rich repeat extensin-like protein 6 [Ziziphus jujuba] >XP_024934900.1 leucine-rich repeat extensin-like protein 6 [Ziziphus jujuba])
HSP 1 Score: 125.2 bits (313), Expect = 5.6e-25
Identity = 87/187 (46.52%), Postives = 105/187 (56.15%), Query Frame = 0
Query: 8 PNTPYPIHKSQITNPRMLKAAKKKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPP--- 67
P+ H + R + A KKLKFWS+ K++KK H + Y PPPP PPPPPPP
Sbjct: 11 PSVFQRFHGDALLPSRNMIKAVKKLKFWSRKKRKKKTH-QSYYSPPPPPYPPPPPPPPPR 70
Query: 68 CHCCTCPCSSAIQPSAPPLPP-WLDD----RTF------PPSSTQS----ERPDEAEI-- 127
HCC SS+ QPSAPPLPP W D TF PP+ S +P+E +
Sbjct: 71 SHCCCSCYSSSTQPSAPPLPPSWFDSDLTHDTFLGPGVHPPAPESSFPNPNQPEEIVLDS 130
Query: 128 -AAPLV-----ADPSYQQYMAPNPVYGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFC 169
PL ++ SYQQYM PNPVYG+P V RRE+S FGCV + GI LIRCF
Sbjct: 131 TTTPLYPTLPESNSSYQQYMVPNPVYGIP--VSQTSRREKSGGIFGCVVNFGIHLIRCFV 190
BLAST of Lcy13g015800 vs. TAIR 10
Match:
AT4G24265.1 (unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 60.1 bits (144), Expect = 2.1e-09
Identity = 52/156 (33.33%), Postives = 72/156 (46.15%), Query Frame = 0
Query: 30 KKLKFWSKNKKRKKIHNHNPYLFPPPPLPPPPPPPCHCCTCPCSSA-----IQPSAPPLP 89
KKL FWS+ K+++K P P H C+C SS ++P+APPLP
Sbjct: 2 KKLTFWSRKKRKRK-----------QACPSQP----HHCSCEYSSTAVAVLVEPTAPPLP 61
Query: 90 PWLDD-RTFPPSSTQS----------ERPDEAEIAAPLVAD-------PSYQQYMAPNPV 149
W D+ R+ P T S ++ + A PL++ SYQQYM PNP
Sbjct: 62 YWFDETRSLCPPETSSFPWTTHHLPHQQEETIVEATPLLSQVSDLRIYQSYQQYMVPNPT 121
Query: 150 YGVPMIVQSGFRRERSFASFGCVGDLGIRLIRCFCP 163
V + + +RS FGCV +L L+RCF P
Sbjct: 122 SNVHFVEPA--TAKRSVGIFGCVIELSSSLVRCFIP 140
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EYP6 | 2.8e-46 | 68.67 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A6J1DM77 | 3.4e-28 | 56.95 | uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
| A0A6P6GE81 | 2.1e-25 | 46.77 | formin-like protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC112492589 PE=4 SV=1 | [more] |
| A0A6P6GL92 | 2.7e-25 | 46.52 | leucine-rich repeat extensin-like protein 6 OS=Ziziphus jujuba OX=326968 GN=LOC1... | [more] |
| A0A6J5TV75 | 3.6e-25 | 46.93 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10488 PE=4 S... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6601672.1 | 4.0e-47 | 70.00 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022933064.1 | 5.8e-46 | 68.67 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| XP_022155153.1 | 7.1e-28 | 56.95 | uncharacterized protein LOC111022295 [Momordica charantia] | [more] |
| XP_024932440.1 | 4.3e-25 | 46.77 | formin-like protein 5 [Ziziphus jujuba] >XP_024932441.1 formin-like protein 5 [Z... | [more] |
| XP_024934899.1 | 5.6e-25 | 46.52 | leucine-rich repeat extensin-like protein 6 [Ziziphus jujuba] >XP_024934900.1 le... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G24265.1 | 2.1e-09 | 33.33 | unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacter... | [more] |
