Lcy13g014060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g014060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	keratin, type II cytoskeletal 3 isoform X2
Location	Chr13: 27082201 .. 27084258 (+)
RNA-Seq Expression	Lcy13g014060
Synteny	Lcy13g014060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAGTTCCTCTTTCCTTCATTTTCGATCTTCATGTTCATTTCACAAATTCAATTTAAGCCAATTCGATCATTTTTTGAACCCCAACCGAGGTCAAATTGTTACAATCGTGGTTGCCCAATGACTTCTGATTCTCACAGTTTTTATTTATTTTATTTATTTTTATTTTATGTTTTTGTCAAGGCTTTTCTCTTTTTGCTTCTTTTCTGCGAGCTGTGTTATGTCTCCATAGAATGCAATGCGGCTGTGAGATATATATTTATCCTATCTTAATTATGTGCTTGGTTTATATAAAAAATGTGAGGTAAGAGTGGTCAATAATCAATATATATCACCCTGCAAATCCAAAGATAGAGGTCAATCTCATACACACCTTGCTTTTCTCTTTTTTTCTTTTTCTCTTTTAGTTTATCCCTCCTTGTAGATTCAGAAGGAAGACTAAGACAATATTAAAAGTGTGAAGGTTGGATTTATATTCCCTAAAACATGAATTCAAGGGAAAAAAGAGTTGAATATGTTATCATGCCAACATTATATGGCTTTGCATGTTCTAGTTGTCATCAATACGTTAGTATCTGTCAATTTTGATCGGAGTGAAAGTGAATATTTTGTGCAAAAAGAAAAGTGGCTTGTATGTTGTTTAAATTTAAACCCTATTTTCTTTTGCAACAAAGTGCTCTTTATTGTCATTGCTCAAGTATTTTGATTACTTTTCAATTGGATTCTAAATGCACTAGTATACACTAGTATCTTTTTTTTTTTCTTCCTTTCTAAAGGATTTTGGCTTGAGATTTACAAGATTAAAGCCTGTGTTCTCATCTCTGAAGTTTTTTTCCTTGGGTTCTCAAAGTTTTTGGCTGTCCTTGGATTTCTCTTATGGTTTGGTGTTTTCTCCTAGCTCTTCTTCATTGGTTTGCTGTTTTTTTTTTAGTTGAGTTGGTTTTCTTTTTCAGCTTTGTTTTCAATTCATAGGGTGGAGTTCTTTTGGTGGTTTCTTCACGCTTGGTTTTTCTTTTGGCTCAAAGTGGTAGTTTTCTTTTTGGTTTGCTGGAGCTTTTGGAGAGGCTGGTTTGCTTTTTTGCCTGGTCATCTTCAGCTGCTTGGTAGTAGTTCTTTTGCTGGCTCTTTCTCTTTGGTTTCTTTAGCCTGTTTAGTGTTTTCTTTGGTTTTTTGTTGCAGGCTAGTTTTGTTGTTTGTTTGAGGTTCTCAGTTATATTTTGGAGTGAGGGGTGATAGTATGTTTTTTAGTCTATAAGAAACAAGGTTGATTTTCCTTTTGGTAGTAGACTTTATATTAATGAGAAAAAAAGAGAACACAAGGAGTTAGGAAGATAAAACATTCTTTGTCTCCAACATGCACATGCGTCCACACCTAGAAGAAGAAGAAGAAGCTATAATGAATTTTGGGTTTTGATAGAAGGTAGGGCTTGAGTTTCAACTAATAGACATTATCACTGTGCCAATTTTATTTTGAACTTTACAATGTGGTGAACTATCCTTGTTTTATTTTAACTACTTAAGTAGATGTATTTGCTAAAGTTGTTCTCCGCTCTAGGTGCTAGATTAGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTTTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGGGGCATTGCCCAAGATGACAAACGAAGATACTCCAACGTTGGGGATCTATTACATGGTCATCAAAGTATTTTTCCTCAGTAAGTTCTCAAAACTAATTGTTTTCAACTCGTGATCAACTAATTTGTTATCTTACTCTCAAACTATATATAATTGGATATGAAAGGAAAAAAACCCTTGAGCAATGTGACAACAGTCAAAAGGTGAGTTTGCTTGTAGTTTTATGTTTTGTGAATTCACTACGTCAACAGGAGGTTTCAAGAAAGTACATTTACTTGGAGAGGATCATTTTCAGTTGAGCTTTTGAAAAAGTTGAAAGCACATTTTTGGCCCACTGGTACTGTAAATTTTATGCTCATGTTAAAGATGGTGAAGGCAACCCTTTTTGACAAGTTTCTTGTGTAG

mRNA sequence

ATGAGTGCTAGATTAGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTTTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGGGGCATTGCCCAAGATGACAAACGAAGATACTCCAACGTTGGGGATCTATTACATGGTCATCAAAGTATTTTTCCTCAGAGGTTTCAAGAAAGTACATTTACTTGGAGAGGATCATTTTCAGTTGAGCTTTTGAAAAAGTTGAAAGCACATTTTTGGCCCACTGGTACTGTAAATTTTATGCTCATGTTAAAGATGGTGAAGGCAACCCTTTTTGACAAGTTTCTTGTGTAG

Coding sequence (CDS)

ATGAGTGCTAGATTAGGTCCAGGAATTCCTGGCTTACAACTTGGCTTTGGTTTTGGTGCTGGATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGGGGCATTGCCCAAGATGACAAACGAAGATACTCCAACGTTGGGGATCTATTACATGGTCATCAAAGTATTTTTCCTCAGAGGTTTCAAGAAAGTACATTTACTTGGAGAGGATCATTTTCAGTTGAGCTTTTGAAAAAGTTGAAAGCACATTTTTGGCCCACTGGTACTGTAAATTTTATGCTCATGTTAAAGATGGTGAAGGCAACCCTTTTTGACAAGTTTCTTGTGTAG

Protein sequence

MSARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQRFQESTFTWRGSFSVELLKKLKAHFWPTGTVNFMLMLKMVKATLFDKFLV

Homology

[Close]

BLAST of Lcy13g014060 vs. ExPASy TrEMBL
Match: A0A1S4E347 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498610 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQR 62
           A  GPGIPGLQLGFG GAGCGVGLGFGYGVGRGIAQDDKRRYSNVGD+L GHQSIFP +
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDVLRGHQSIFPHQ 114

[Close]

BLAST of Lcy13g014060 vs. ExPASy TrEMBL
Match: A0A6J1IA95 (keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 61
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIFPQ
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQ 113

[Close]

BLAST of Lcy13g014060 vs. ExPASy TrEMBL
Match: A0A6J1ICW2 (keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472645 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQR 62
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIFP R
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHR 114

[Close]

BLAST of Lcy13g014060 vs. ExPASy TrEMBL
Match: A0A6J1EY31 (keratin, type II cytoskeletal 2 epidermal isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439279 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQR 62
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIFP R
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPHR 114

[Close]

BLAST of Lcy13g014060 vs. ExPASy TrEMBL
Match: A0A6J1F360 (keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439279 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 61
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+G QSIFPQ
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGRQSIFPQ 113

[Close]

BLAST of Lcy13g014060 vs. NCBI nr
Match: XP_038889093.1 (ctenidin-1 isoform X1 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQR 62
           A  GPGIPGLQLGFG GAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ+
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQK 114

[Close]

BLAST of Lcy13g014060 vs. NCBI nr
Match: XP_038889094.1 (glycine-rich cell wall structural protein 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 61
           A  GPGIPGLQLGFG GAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 113

[Close]

BLAST of Lcy13g014060 vs. NCBI nr
Match: XP_023521209.1 (fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 61
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+GHQSIFPQ
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPQ 113

[Close]

BLAST of Lcy13g014060 vs. NCBI nr
Match: XP_023521208.1 (ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQR 62
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+GHQSIFP R
Sbjct: 56  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPHR 114

[Close]

BLAST of Lcy13g014060 vs. NCBI nr
Match: KAG6592270.1 (hypothetical protein SDJN03_14616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 3   ARLGPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSIFPQ 61
           A  GPGIPGLQLGFG GAGCGVGLGFGYG GRGIAQDDKRRYSNVGDLL+GHQSIFPQ
Sbjct: 52  AGFGPGIPGLQLGFGLGAGCGVGLGFGYGAGRGIAQDDKRRYSNVGDLLNGHQSIFPQ 109

[Close]

BLAST of Lcy13g014060 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 70.9 bits (172), Expect = 7.4e-13
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 6  GPGIPGLQLGFGFGAGCGVGLGFGYGVGRGIAQDDKRRYSNVG 49
          GPG+PGLQ G GFGAGCG+G+GFGYGVGRG A D  R Y NVG
Sbjct: 54 GPGVPGLQFGLGFGAGCGIGVGFGYGVGRGAAYDHSRSYYNVG 96

The following BLAST results are available for this feature:

BLAST of Lcy13g014060 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g014060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E347	7.5e-21	88.14	glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103498...	[more]
A0A6J1IA95	2.2e-20	89.66	keratin, type II cytoskeletal 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1ICW2	2.2e-20	88.14	keratin, type II cytoskeletal 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EY31	2.2e-20	88.14	keratin, type II cytoskeletal 2 epidermal isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1F360	2.2e-20	89.66	keratin, type II cytoskeletal 2 epidermal isoform X2 OS=Cucurbita moschata OX=36...	[more]

BLAST of Lcy13g014060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889093.1	1.7e-22	93.22	ctenidin-1 isoform X1 [Benincasa hispida]	[more]
XP_038889094.1	2.8e-22	94.83	glycine-rich cell wall structural protein 1 isoform X2 [Benincasa hispida]	[more]
XP_023521209.1	5.3e-21	91.38	fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023521208.1	5.3e-21	89.83	ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6592270.1	5.3e-21	91.38	hypothetical protein SDJN03_14616, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy13g014060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10330.1	7.4e-13	74.42	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34201	GLYCINE-RICH PROTEIN	coord: 4..57
None	No IPR available	PANTHER	PTHR34201:SF1	GLYCINE-RICH PROTEIN	coord: 4..57
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g014060.1	Lcy13g014060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane