Lcy12g009670 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g009670
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionarmadillo repeat-containing protein 4-like
LocationChr12: 36505725 .. 36505910 (+)
RNA-Seq ExpressionLcy12g009670
SyntenyLcy12g009670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCACTCACAGATTCAGAGAGAATCTGCAAAGCCGAGTCTAGATTGGGAAGCAGCGCTGAAGCGGTATGAAAACGTTATGGCTTCAGAATCCGAGGCTGTTAAAGTGAAAGCCACAGTCAAATTGGCCCATCTCTCCAAAAAGGCCCCCGAGAATATTTTGAACAGCACCATACCCATCTAA

mRNA sequence

ATGGGCCACTCACAGATTCAGAGAGAATCTGCAAAGCCGAGTCTAGATTGGGAAGCAGCGCTGAAGCGGTATGAAAACGTTATGGCTTCAGAATCCGAGGCTGTTAAAGTGAAAGCCACAGTCAAATTGGCCCATCTCTCCAAAAAGGCCCCCGAGAATATTTTGAACAGCACCATACCCATCTAA

Coding sequence (CDS)

ATGGGCCACTCACAGATTCAGAGAGAATCTGCAAAGCCGAGTCTAGATTGGGAAGCAGCGCTGAAGCGGTATGAAAACGTTATGGCTTCAGAATCCGAGGCTGTTAAAGTGAAAGCCACAGTCAAATTGGCCCATCTCTCCAAAAAGGCCCCCGAGAATATTTTGAACAGCACCATACCCATCTAA

Protein sequence

MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIPI
Homology
BLAST of Lcy12g009670 vs. ExPASy TrEMBL
Match: A0A6J1F8U2 (uncharacterized protein LOC111443172 OS=Cucurbita moschata OX=3662 GN=LOC111443172 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MGHSQI R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MGHSQIHRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. ExPASy TrEMBL
Match: A0A6J1ILS8 (uncharacterized protein LOC111476761 OS=Cucurbita maxima OX=3661 GN=LOC111476761 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-16
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          M HS+I+R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MSHSEIRRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. ExPASy TrEMBL
Match: A0A1S3CJQ4 (uncharacterized protein LOC103501229 OS=Cucumis melo OX=3656 GN=LOC103501229 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-15
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MG ++I R S  P+LDWEA+LK+YENVMASESEA+KVKAT+KLA LSK APENIL S IP
Sbjct: 1  MGDTKIHRASENPNLDWEASLKQYENVMASESEALKVKATIKLAQLSKNAPENILKSAIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. ExPASy TrEMBL
Match: A0A5A7U359 (Vacuolar protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00230 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-15
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MG ++I R S  P+LDWEA+LK+YENVMASESEA+KVKAT+KLA LSK APENIL S IP
Sbjct: 1  MGDTKIHRASENPNLDWEASLKQYENVMASESEALKVKATIKLAQLSKNAPENILKSAIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. ExPASy TrEMBL
Match: A0A6J1CFX3 (uncharacterized protein LOC111010437 OS=Momordica charantia OX=3673 GN=LOC111010437 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-15
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          M  S+I++ES KP+L+WE AL++Y+NVMASESEAVKVKATVKLA+LS+ APENILNSTIP
Sbjct: 1  MSCSRIRKESEKPNLNWEEALRQYQNVMASESEAVKVKATVKLANLSQCAPENILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. NCBI nr
Match: XP_038897634.1 (protein spotted leaf 11 [Benincasa hispida] >XP_038897635.1 protein spotted leaf 11 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MGHSQI R S KP+LDWEAAL +YENVMASESEAVKVKAT+KLAHLSK APENILNS IP
Sbjct: 1  MGHSQIHRASEKPNLDWEAALTQYENVMASESEAVKVKATIKLAHLSKNAPENILNSAIP 60

BLAST of Lcy12g009670 vs. NCBI nr
Match: KAG6592081.1 (U-box domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024957.1 Armadillo repeat-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MGHSQI R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MGHSQIHRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. NCBI nr
Match: XP_022936629.1 (uncharacterized protein LOC111443172 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          MGHSQI R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MGHSQIHRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. NCBI nr
Match: XP_022976328.1 (uncharacterized protein LOC111476761 [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          M HS+I+R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MSHSEIRRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

BLAST of Lcy12g009670 vs. NCBI nr
Match: XP_023534876.1 (uncharacterized protein LOC111796476 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MGHSQIQRESAKPSLDWEAALKRYENVMASESEAVKVKATVKLAHLSKKAPENILNSTIP 60
          M HS+I+R S KP+LDWEAALK+YENVMA+ESEAVKVKAT+KLA LS  AP NILNSTIP
Sbjct: 1  MSHSEIRRASEKPNLDWEAALKQYENVMATESEAVKVKATIKLASLSNDAPHNILNSTIP 60

Query: 61 I 62
          I
Sbjct: 61 I 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F8U22.1e-1781.97uncharacterized protein LOC111443172 OS=Cucurbita moschata OX=3662 GN=LOC1114431... [more]
A0A6J1ILS81.8e-1678.69uncharacterized protein LOC111476761 OS=Cucurbita maxima OX=3661 GN=LOC111476761... [more]
A0A1S3CJQ49.9e-1573.77uncharacterized protein LOC103501229 OS=Cucumis melo OX=3656 GN=LOC103501229 PE=... [more]
A0A5A7U3599.9e-1573.77Vacuolar protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G0... [more]
A0A6J1CFX39.9e-1575.41uncharacterized protein LOC111010437 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
Match NameE-valueIdentityDescription
XP_038897634.15.2e-1885.00protein spotted leaf 11 [Benincasa hispida] >XP_038897635.1 protein spotted leaf... [more]
KAG6592081.14.4e-1781.97U-box domain-containing protein 12, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_022936629.14.4e-1781.97uncharacterized protein LOC111443172 [Cucurbita moschata][more]
XP_022976328.13.7e-1678.69uncharacterized protein LOC111476761 [Cucurbita maxima][more]
XP_023534876.13.7e-1678.69uncharacterized protein LOC111796476 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23315:SF245U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKEcoord: 7..61
NoneNo IPR availablePANTHERPTHR23315U BOX DOMAIN-CONTAININGcoord: 7..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g009670.1Lcy12g009670.1mRNA