Lcy12g001290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g001290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DDE Tnp4 domain-containing protein
Location	Chr12: 2314876 .. 2315550 (-)
RNA-Seq Expression	Lcy12g001290
Synteny	Lcy12g001290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTGGAGGAGGCTCTAGCAATGTTCCTTATTACAACATTGGGTCATGGTTTCAGCAATAGAATGGTTCAAGAGAGATTTCAACACTCAGGTGAGACGGTATCAAGGTGGTTTAATATAGTGTTAGATGTTATTTGTCGTATGGCTGTGGATGTAATTAAGCCAGTTGATCCACAATTCAAATCTATTCCTGATAAAATTAAAAATGACACTCGATATTGGCCATATTTCAAAGATTGTATTGGAGCAATTGATGGTACTCATATATCGGTAGTAGCACCCAAAGGAAAACATATACCGTATATTGGTCGAAAACATATTACCACCCAAAATATTATGGCAGTATGTGATTTTAACATGTGTTTTACATTTATTTGGGCCGGATGGGAAGGTGCCGCTCATGACGCTCGAATTTTTGTGGAGGCAATAAGGAAAACCACATTTGAGATTTTCCACATCCACCTAAAGGTTAGTATTTAATAATTACGACATTAATGTTTATTAATTTTTTTAGTATTATTTTTTATATAATTAGTGTTTATTTCATTTTTTTTATAGGAAAATTATCTTGTAGATTTTGGTTATCCACAAATGAAAGGATTTTTAGGTCCTTATAGAGGTGAGCGATACCATCTTGCTGATTTTCGACGTGGAAGTCAACAAGAGGTATAA

mRNA sequence

atgcctttggaggaggctctagcaatgttccttattacaacattgggtcatggtttcagcaatagaatggttcaagagagatttcaacactcaggtgagacggtatcaaggtggtttaatatagtgttagatgttatttgtcgtatggctgtggatgtaattaagccagttgatccacaattcaaatctattcctgataaaattaaaaatgacactcgatattggccatatttcaaagattgtattggagcaattgatggtactcatatatcggtagtagcacccaaaggaaaacatataccgtatattggtcgaaaacatattaccacccaaaatattatggcagtatgtgattttaacatgtgttttacatttatttgggccggatgggaaggtgcCGCTCATGACGCTCGAATTTTTGTGGAGGCAATAAGGAAAACCACATTTGAGATTTTCCACATCCACCTAAAGGAAAATTATCTTGTAGATTTTGGTTATCCACAAATGAAAGGATTTTTAGGTCCTTATAGAGGTGAGCGATACCATCTTGCTGATTTTCGACGTGGAAGTCAACAAGAGGTATAA

Coding sequence (CDS)

ATGCCTTTGGAGGAGGCTCTAGCAATGTTCCTTATTACAACATTGGGTCATGGTTTCAGCAATAGAATGGTTCAAGAGAGATTTCAACACTCAGGTGAGACGGTATCAAGGTGGTTTAATATAGTGTTAGATGTTATTTGTCGTATGGCTGTGGATGTAATTAAGCCAGTTGATCCACAATTCAAATCTATTCCTGATAAAATTAAAAATGACACTCGATATTGGCCATATTTCAAAGATTGTATTGGAGCAATTGATGGTACTCATATATCGGTAGTAGCACCCAAAGGAAAACATATACCGTATATTGGTCGAAAACATATTACCACCCAAAATATTATGGCAGTATGTGATTTTAACATGTGTTTTACATTTATTTGGGCCGGATGGGAAGGTGCCGCTCATGACGCTCGAATTTTTGTGGAGGCAATAAGGAAAACCACATTTGAGATTTTCCACATCCACCTAAAGGAAAATTATCTTGTAGATTTTGGTTATCCACAAATGAAAGGATTTTTAGGTCCTTATAGAGGTGAGCGATACCATCTTGCTGATTTTCGACGTGGAAGTCAACAAGAGGTATAA

Protein sequence

MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQFKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGERYHLADFRRGSQQEV

Homology

[Close]

BLAST of Lcy12g001290 vs. ExPASy Swiss-Prot
Match: B0BN95 (Putative nuclease HARBI1 OS=Rattus norvegicus OX=10116 GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.9e-06
Identity = 19/69 (27.54%), Postives = 35/69 (50.72%), Query Frame = 0


Query: 82  IGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMCFTFIWAGWEGAAHDARIFV 141
           IGA+D  H+++ AP  + + Y+ RK + + N + VCD       +   W G+  D  +  
Sbjct: 145 IGAVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQ 204

Query: 142 EAIRKTTFE 151
           ++   + FE
Sbjct: 205 QSSLSSQFE 213

[Close]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL
Match: A5AXN9 (DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.3e-83
Identity = 141/194 (72.68%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 415 MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 474

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 475 FKEVPDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 534

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEG AHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 535 MCFTFAWAGWEGVAHDARVFLEALRRPELGFPHPPKGKYYLVDAGYPQMSGYLGPYKGER 594

Query: 181 YHLADFRRGSQQEV 195
           YHL DFRRGS  +V
Sbjct: 595 YHLPDFRRGSSPKV 607

[Close]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL
Match: A0A438I069 (DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_035860 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.7e-81
Identity = 139/190 (73.16%), Postives = 158/190 (83.16%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF I LDV+C MAVD+IKP DPQ
Sbjct: 95  MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIELDVVCLMAVDIIKPSDPQ 154

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK + DKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 155 FKEVLDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 214

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEGAAHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 215 MCFTFAWAGWEGAAHDARVFLEALRRPELGFPHPPRGKYYLVDAGYPQMSGYLGPYKGER 274

Query: 181 YHLADFRRGS 191
           YHL DFRRGS
Sbjct: 275 YHLPDFRRGS 283

[Close]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL
Match: A0A438JIA2 (Protein ALP1-like OS=Vitis vinifera OX=29760 GN=VvCHDp000294_3 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 138/190 (72.63%), Postives = 159/190 (83.68%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 95  MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 154

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND +YWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 155 FKEVPDKIRNDDQYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 214

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEGAAHDA++F+EA+R+           + YLVD GYPQM G+LGPY+GER
Sbjct: 215 MCFTFAWAGWEGAAHDAQVFLEALRRPELGFPDPPRGKYYLVDAGYPQMSGYLGPYKGER 274

Query: 181 YHLADFRRGS 191
           YHL DFRRGS
Sbjct: 275 YHLPDFRRGS 283

[Close]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL
Match: A0A438C588 (L10-interacting MYB domain-containing protein OS=Vitis vinifera OX=29760 GN=LIMYB_9 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80
Identity = 137/188 (72.87%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 403 MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 462

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+M VCDFN
Sbjct: 463 FKEVPDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMVVCDFN 522

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF W GWEGAAHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 523 MCFTFAWVGWEGAAHDARVFLEALRRLELGFPHPPRGKYYLVDAGYPQMSGYLGPYKGER 582

Query: 181 YHLADFRR 189
           YHL DFRR
Sbjct: 583 YHLPDFRR 589

[Close]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL
Match: A0A438JR82 (L10-interacting MYB domain-containing protein OS=Vitis vinifera OX=29760 GN=LIMYB_49 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.4e-76
Identity = 127/178 (71.35%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 13  TTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQFKSIPDKIKNDT 72
           T   HG SNRM+QERFQHSGE+VSRWF IVLDV+C MA+D+IKP DPQFK +PDKI+ND 
Sbjct: 341 TFTSHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAIDIIKPSDPQFKEVPDKIRNDD 400

Query: 73  RYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMCFTFIWAGWEG 132
           RYWPYFK+CIG I+GTHI VV P+ + IPYIGRK +TTQN+MAVCDFNMCFTF WAGWEG
Sbjct: 401 RYWPYFKNCIGVINGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFNMCFTFAWAGWEG 460

Query: 133 AAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGERYHLADFRRGS 191
           AAHDAR+F+EA+R+      H    + YLVD GYPQM G+LG Y+GERYHL DFRRGS
Sbjct: 461 AAHDARVFLEALRRPELGFPHPPRGKYYLVDAGYPQMSGYLGTYKGERYHLPDFRRGS 518

[Close]

BLAST of Lcy12g001290 vs. NCBI nr
Match: CAN78441.1 (hypothetical protein VITISV_023669 [Vitis vinifera])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 141/194 (72.68%), Postives = 161/194 (82.99%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 415 MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 474

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 475 FKEVPDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 534

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEG AHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 535 MCFTFAWAGWEGVAHDARVFLEALRRPELGFPHPPKGKYYLVDAGYPQMSGYLGPYKGER 594

Query: 181 YHLADFRRGSQQEV 195
           YHL DFRRGS  +V
Sbjct: 595 YHLPDFRRGSSPKV 607

[Close]

BLAST of Lcy12g001290 vs. NCBI nr
Match: RVW90111.1 (hypothetical protein CK203_035860 [Vitis vinifera])

HSP 1 Score: 309.7 bits (792), Expect = 1.8e-80
Identity = 139/190 (73.16%), Postives = 158/190 (83.16%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF I LDV+C MAVD+IKP DPQ
Sbjct: 95  MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIELDVVCLMAVDIIKPSDPQ 154

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK + DKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 155 FKEVLDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 214

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEGAAHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 215 MCFTFAWAGWEGAAHDARVFLEALRRPELGFPHPPRGKYYLVDAGYPQMSGYLGPYKGER 274

Query: 181 YHLADFRRGS 191
           YHL DFRRGS
Sbjct: 275 YHLPDFRRGS 283

[Close]

BLAST of Lcy12g001290 vs. NCBI nr
Match: RVX08681.1 (Protein ALP1-like [Vitis vinifera])

HSP 1 Score: 309.3 bits (791), Expect = 2.3e-80
Identity = 138/190 (72.63%), Postives = 159/190 (83.68%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 95  MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 154

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND +YWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+MAVCDFN
Sbjct: 155 FKEVPDKIRNDDQYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFN 214

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF WAGWEGAAHDA++F+EA+R+           + YLVD GYPQM G+LGPY+GER
Sbjct: 215 MCFTFAWAGWEGAAHDAQVFLEALRRPELGFPDPPRGKYYLVDAGYPQMSGYLGPYKGER 274

Query: 181 YHLADFRRGS 191
           YHL DFRRGS
Sbjct: 275 YHLPDFRRGS 283

[Close]

BLAST of Lcy12g001290 vs. NCBI nr
Match: RVW18405.1 (L10-interacting MYB domain-containing protein [Vitis vinifera])

HSP 1 Score: 308.9 bits (790), Expect = 3.1e-80
Identity = 137/188 (72.87%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MPLEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQ 60
           MPL E LAMFL TT+GHG SNRM+QERFQHSGE+VSRWF IVLDV+C MAVD+IKP DPQ
Sbjct: 403 MPLIEVLAMFL-TTIGHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAVDIIKPSDPQ 462

Query: 61  FKSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFN 120
           FK +PDKI+ND RYWPYFK+CIG IDGTHI VV P+ + IPYIGRK +TTQN+M VCDFN
Sbjct: 463 FKEVPDKIRNDDRYWPYFKNCIGVIDGTHIPVVVPRDRKIPYIGRKGVTTQNVMVVCDFN 522

Query: 121 MCFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGER 180
           MCFTF W GWEGAAHDAR+F+EA+R+      H    + YLVD GYPQM G+LGPY+GER
Sbjct: 523 MCFTFAWVGWEGAAHDARVFLEALRRLELGFPHPPRGKYYLVDAGYPQMSGYLGPYKGER 582

Query: 181 YHLADFRR 189
           YHL DFRR
Sbjct: 583 YHLPDFRR 589

[Close]

BLAST of Lcy12g001290 vs. NCBI nr
Match: RVX11459.1 (L10-interacting MYB domain-containing protein [Vitis vinifera])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 127/178 (71.35%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 13  TTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQFKSIPDKIKNDT 72
           T   HG SNRM+QERFQHSGE+VSRWF IVLDV+C MA+D+IKP DPQFK +PDKI+ND 
Sbjct: 341 TFTSHGLSNRMIQERFQHSGESVSRWFEIVLDVVCLMAIDIIKPSDPQFKEVPDKIRNDD 400

Query: 73  RYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMCFTFIWAGWEG 132
           RYWPYFK+CIG I+GTHI VV P+ + IPYIGRK +TTQN+MAVCDFNMCFTF WAGWEG
Sbjct: 401 RYWPYFKNCIGVINGTHIPVVVPRDRKIPYIGRKGVTTQNVMAVCDFNMCFTFAWAGWEG 460

Query: 133 AAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGERYHLADFRRGS 191
           AAHDAR+F+EA+R+      H    + YLVD GYPQM G+LG Y+GERYHL DFRRGS
Sbjct: 461 AAHDARVFLEALRRPELGFPHPPRGKYYLVDAGYPQMSGYLGTYKGERYHLPDFRRGS 518

[Close]

BLAST of Lcy12g001290 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-30
Identity = 73/193 (37.82%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 3   LEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIK-PVDPQF 62
           +EE++AMFL    GH    R V  RF  + ETV R F  VL     +A D I+ P   + 
Sbjct: 98  IEESVAMFL-RICGHNEVYRDVGLRFGRNQETVQRKFREVLTATELLACDYIRTPTRQEL 157

Query: 63  KSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNM 122
             IP++++ D RYWPYF   +GA+DGTH+ V         Y  R    + NIMA+CD  M
Sbjct: 158 YRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKM 217

Query: 123 CFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGE-- 182
            FT+IW G  G+ +D  + ++  +++  E      ++ YLVD GYP  +G L PYR    
Sbjct: 218 LFTYIWNGAPGSCYDTAV-LQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRN 277

Query: 183 ---RYHLADFRRG 190
              RYH++ F  G
Sbjct: 278 RVVRYHMSQFYYG 288

[Close]

BLAST of Lcy12g001290 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 3   LEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVDPQFK 62
           +E  LA+FL   +GH    R VQE F +SGET+SR FN VL+ +  ++ D  +P      
Sbjct: 74  IEAQLAIFLF-IIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQP-----N 133

Query: 63  SIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMC 122
           S  D ++ND    PYFKDC+G +D  HI V+    +  P+     + TQN++A   F++ 
Sbjct: 134 SNSDTLENDD---PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLR 193

Query: 123 FTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRG 179
           F ++ AGWEG+A D ++   A+  T      +   + Y+VD  YP + GF+ PY G
Sbjct: 194 FNYVLAGWEGSASDQQVLNAAL--TRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHG 238

[Close]

BLAST of Lcy12g001290 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-23
Identity = 61/185 (32.97%), Postives = 100/185 (54.05%), Query Frame = 0


Query: 3   LEEALAMFLITTLGHGFSNRMVQERFQHSGETVSRWFNIVLDVICRMAVDVIKPVD-PQF 62
           L+E++A+FLI    +  + R +  RF H+ ET+ R F+ VL  + R+AV+ I+P    + 
Sbjct: 56  LDESVAIFLIICASND-TQRDIALRFGHAQETIWRKFHDVLKAMERLAVEYIRPRKVEEL 115

Query: 63  KSIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNM 122
           ++I +++++DTRYWP+  D +G                        I + N++A+CD +M
Sbjct: 116 RAISNRLQDDTRYWPFLMDLLG------------------------IASFNVLAICDLDM 175

Query: 123 CFTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHL-KENYLVDFGYPQMKGFLGPYRGER 182
            FT+ + G  G+ HDAR+   AI  +   +FH+    + YLVD GY   +G+L PYR E 
Sbjct: 176 LFTYCFVGMAGSTHDARVLSAAI--SDDPLFHVPPDSKYYLVDSGYANKRGYLAPYRREH 213

Query: 183 YHLAD 186
               D
Sbjct: 236 REAQD 213

[Close]

BLAST of Lcy12g001290 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-19
Identity = 35/86 (40.70%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 63  SIPDKIKNDTRYWPYFKDCIGAIDGTHISVVAPKGKHIPYIGRKHITTQNIMAVCDFNMC 122
           ++P KI+  TR +PYFKDC+GAID THI  +  + K   +  RK   +QN++A C+F++ 
Sbjct: 7   AVPRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVE 66

Query: 123 FTFIWAGWEGAAHDARIFVEAIRKTT 149
           F ++ +GWEG+AHD+++  +A+ + +
Sbjct: 67  FMYVLSGWEGSAHDSKVLNDALTRNS 92

[Close]

BLAST of Lcy12g001290 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 123 FTFIWAGWEGAAHDARIFVEAIRKTTFEIFHIHLKENYLVDFGYPQMKGFLGPYRGERYH 182
           F ++ +GWEG+AHD+R+  +A+RK             YLVD G+     FL P+RG RYH
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRKF------------YLVDCGFANRLNFLAPFRGVRYH 76

Query: 183 LADF 187
           L +F
Sbjct: 85  LQEF 76

The following BLAST results are available for this feature:

BLAST of Lcy12g001290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0BN95	8.9e-06	27.54	Putative nuclease HARBI1 OS=Rattus norvegicus OX=10116 GN=Harbi1 PE=2 SV=1	[more]

BLAST of Lcy12g001290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AXN9	9.3e-83	72.68	DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_023669 P...	[more]
A0A438I069	8.7e-81	73.16	DDE Tnp4 domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_035860 PE...	[more]
A0A438JIA2	1.1e-80	72.63	Protein ALP1-like OS=Vitis vinifera OX=29760 GN=VvCHDp000294_3 PE=3 SV=1	[more]
A0A438C588	1.5e-80	72.87	L10-interacting MYB domain-containing protein OS=Vitis vinifera OX=29760 GN=LIMY...	[more]
A0A438JR82	8.4e-76	71.35	L10-interacting MYB domain-containing protein OS=Vitis vinifera OX=29760 GN=LIMY...	[more]

BLAST of Lcy12g001290 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN78441.1	1.9e-82	72.68	hypothetical protein VITISV_023669 [Vitis vinifera]	[more]
RVW90111.1	1.8e-80	73.16	hypothetical protein CK203_035860 [Vitis vinifera]	[more]
RVX08681.1	2.3e-80	72.63	Protein ALP1-like [Vitis vinifera]	[more]
RVW18405.1	3.1e-80	72.87	L10-interacting MYB domain-containing protein [Vitis vinifera]	[more]
RVX11459.1	1.7e-75	71.35	L10-interacting MYB domain-containing protein [Vitis vinifera]	[more]

BLAST of Lcy12g001290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43722.1	5.3e-30	37.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	1.3e-28	36.93	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	3.7e-23	32.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G28950.1	7.2e-19	40.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	2.3e-09	42.19	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 85..178 e-value: 1.1E-8 score: 35.0
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 4..180
None	No IPR available	PANTHER	PTHR22930:SF212	NUCLEASE HARBI1 ISOFORM X1-RELATED	coord: 4..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g001290.1	Lcy12g001290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding