Lcy11g011400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g011400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 13536087 .. 13536521 (+)
RNA-Seq Expression	Lcy11g011400
Synteny	Lcy11g011400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAATCAACAACCAATGGTCTATCAAAGTTCTGGAAATGAAAGCAAATCTAGAAGGCGTTAAGAGCATAGTTAACCTGAAGACGGCGGATGCGAGGAGCCAAAAGCCGAAGGTCATGATAGAGTCGGATGCAGCAGTCGTTATCAAAATCATCAACAGAGAGGAGGAAAGCCTCTCGAAGATCAATAATTTGGTGGAAGAAATCTTTCAGTTTGCGGATAAAGTCGAACTTGTCTCCTTCGACAAATGCTCAAGAGCGAGCAACGGAGCGGCACACCGCCTAGCTCGCATGGTCGTTTTCGATGACCCTGTTTTTGTACAACCCAATTCCTTCGTGGAGGAAGATGATAGTTTCATTTTTTTGTGGGTTTTGGGGGGAATTATTCCCGCGTGGGTCTCTTTGTTATTAGACAGCGGTAGTTGTACCTAA

mRNA sequence

ATGCAAGAAATCAACAACCAATGGTCTATCAAAGTTCTGGAAATGAAAGCAAATCTAGAAGGCGTTAAGAGCATAGTTAACCTGAAGACGGCGGATGCGAGGAGCCAAAAGCCGAAGGTCATGATAGAGTCGGATGCAGCAGTCGTTATCAAAATCATCAACAGAGAGGAGGAAAGCCTCTCGAAGATCAATAATTTGGTGGAAGAAATCTTTCAGTTTGCGGATAAAGTCGAACTTGTCTCCTTCGACAAATGCTCAAGAGCGAGCAACGGAGCGGCACACCGCCTAGCTCGCATGGTCGTTTTCGATGACCCTGTTTTTGTACAACCCAATTCCTTCGTGGAGGAAGATGATAGTTTCATTTTTTTGTGGGTTTTGGGGGGAATTATTCCCGCGTGGGTCTCTTTGTTATTAGACAGCGGTAGTTGTACCTAA

Coding sequence (CDS)

ATGCAAGAAATCAACAACCAATGGTCTATCAAAGTTCTGGAAATGAAAGCAAATCTAGAAGGCGTTAAGAGCATAGTTAACCTGAAGACGGCGGATGCGAGGAGCCAAAAGCCGAAGGTCATGATAGAGTCGGATGCAGCAGTCGTTATCAAAATCATCAACAGAGAGGAGGAAAGCCTCTCGAAGATCAATAATTTGGTGGAAGAAATCTTTCAGTTTGCGGATAAAGTCGAACTTGTCTCCTTCGACAAATGCTCAAGAGCGAGCAACGGAGCGGCACACCGCCTAGCTCGCATGGTCGTTTTCGATGACCCTGTTTTTGTACAACCCAATTCCTTCGTGGAGGAAGATGATAGTTTCATTTTTTTGTGGGTTTTGGGGGGAATTATTCCCGCGTGGGTCTCTTTGTTATTAGACAGCGGTAGTTGTACCTAA

Protein sequence

MQEINNQWSIKVLEMKANLEGVKSIVNLKTADARSQKPKVMIESDAAVVIKIINREEESLSKINNLVEEIFQFADKVELVSFDKCSRASNGAAHRLARMVVFDDPVFVQPNSFVEEDDSFIFLWVLGGIIPAWVSLLLDSGSCT

Homology

[Close]

BLAST of Lcy11g011400 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.9e-06
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9   SIKVLEMKANLEGVKSIVNLKTADARSQKPKVMIESDAAVVIKIINREEESLSKINNLVE 68
           ++K+LE  A LEG++++ NL        +P + IE+D+A V  ++NR+ E L+K   +VE
Sbjct: 120 NVKLLEASAILEGLRNLTNLGVL-----RP-LHIETDSAEVESLLNRKREDLTKTGWVVE 179

Query: 69  EIFQFADKVELVSFDKCSRASNGAAHRLAR 99
           EI    D  E+++F K  R +NG AH LA+
Sbjct: 180 EILNLRDSCEILAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g011400 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9   SIKVLEMKANLEGVKSIVNLKTADARSQKPKVMIESDAAVVIKIINREEESLSKINNLVE 68
           ++K+LE  A LEG++++ NL        +P + IE+D+A V  ++NR+ E L+K   +VE
Sbjct: 120 NVKLLEASAILEGLRNLTNLGVL-----RP-LHIETDSAEVESLLNRKREDLTKTGWVVE 179

Query: 69  EIFQFADKVELVSFDKCSRASNGAAHRLAR 99
           EI    D  E+++F K  R +NG AH LA+
Sbjct: 180 EILNLRDSCEILAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g011400 vs. NCBI nr
Match: KAF7831475.1 (F-box protein interaction domain protein [Senna tora])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 2    QEINNQWSIKVLEMKANLEGVKSIVNLKTADARSQKPKVMIESDAAVVIKIINREEESLS 61
            ++I  +  I VLE  A L G++    L         PKV+IESDAAVV+  +N+EEE  S
Sbjct: 1387 EKICGRGGIDVLEASAILMGMEFAKELSC-------PKVVIESDAAVVVAALNKEEEPAS 1446

Query: 62   KINNLVEEIFQFADKVELVSFDKCSRASNGAAHRLA 98
             + +++ +I    D  + +SF   SR  N  AHRLA
Sbjct: 1447 TVGSVIVDILSLRDSFQSISFSWVSRTCNLVAHRLA 1475

The following BLAST results are available for this feature:

BLAST of Lcy11g011400 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	8.9e-06	38.89	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Lcy11g011400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.8e-05	38.89	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
KAF7831475.1	4.1e-05	38.54	F-box protein interaction domain protein [Senna tora]	[more]

BLAST of Lcy11g011400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 4..99 e-value: 7.2E-10 score: 38.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..104 e-value: 1.1E-7 score: 33.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g011400.1	Lcy11g011400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity