Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGTACTTTGGTCACTTTCATTAATGTTCCTTGTCTCCTCGTTTTCCAACTCCCTAATTGTTTATTTTGTAGAAATATTCATTTTTAATAAAATTTCATTCATTCGTGCATATTGTTCTTTCTTCTATTTCCTTTCTTTTACTTACTCTAAGAATTTTCTTTTAAAAATAAAAAACAGAACAATAAAATAACTCGTTCAACAAGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA
mRNA sequence
ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA
Coding sequence (CDS)
ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA
Protein sequence
MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIRRDLGVYHAYNTRRRTKIMEERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPEVKKELVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK
Homology
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match:
A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 2.1e-36
Identity = 92/180 (51.11%), Postives = 114/180 (63.33%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
+++AEQEKT++DIEE+REK+D I LEKGK D PI PQ P+PP + P +
Sbjct: 3 DQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPL 62
Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
R +AE MPQ+TTYNPL+D+P+GQYP K Q QIP + + E V
Sbjct: 63 RPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ--QIP----TNIIFREPEQMMSPPTV 122
Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
NL K + V A S EK EVLEERLRA+EGT VFGN+DA+QLCLV +VIPPKFK
Sbjct: 123 XNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFK 176
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match:
A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)
HSP 1 Score: 154.1 bits (388), Expect = 7.3e-34
Identity = 94/183 (51.37%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSF---A 115
+ ++EQEKT++DIEE+REK+DAI+ ALEKGK + + + P PQ F PSF
Sbjct: 4 DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63
Query: 116 PNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKIS 175
P+ R + E M Q+TTYNPL+DIP GQ+P PL + PQ P AG + + E
Sbjct: 64 PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGP--PQAP----AGIIFQEPEQVIAP 123
Query: 176 FAVPNLDDPEVKKE---LVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPP 233
V NL P+ K+ APS+EKLEVLEERLRAVEGT VFGN+DA+QLCL +VIPP
Sbjct: 124 PTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPP 180
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match:
A0A6J1D7T3 (uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017812 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 91/180 (50.56%), Postives = 114/180 (63.33%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
+++AEQEK ++DIEE+REK+D I+ ALEKGK V D T P+ + Q P+P + P +
Sbjct: 3 DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPL 62
Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
R +AE M Q+TTYNPL+DI VGQYP P K Q QIP + + E V
Sbjct: 63 RLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQ--QIP----TNIIFREPEQMMPPPTV 122
Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
NL VK + V PSNEK EVLEERL AVEGT VFGN+DA+QLCL+ +VI KFK
Sbjct: 123 LNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFK 176
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match:
A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 2.8e-17
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0
Query: 123 MPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPE 182
MPQ+TTYNPL+D+PVGQY P K Q QIP + + E V NL D
Sbjct: 1 MPQYTTYNPLYDVPVGQYLHPFVKGAQ--QIP----TNIIFREPEQMMSPPTVLNLGDLL 60
Query: 183 VKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
K + V APSNEK EVL+ERLRA+E T VFGN+DA+QLC V +VIPPK K
Sbjct: 61 AKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLVIPPKLK 107
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match:
A0A061EFL3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018989 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 82/255 (32.16%), Postives = 117/255 (45.88%), Query Frame = 0
Query: 1 MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIR--------RDLGVYHAYNTRRRT 60
+A RAR A+ +LR P E L L M+R + + H YNTR R+
Sbjct: 318 VAFRARVMADKTEELRREILPKDELSERLISHLKMVRDQYDKNKIPEKQILHRYNTRARS 377
Query: 61 KIM--EERAEQEKTQRDIEEIREKVDAIIAAL--EKGKMVVDMTAPDTPIENPQAGLP-- 120
KIM E +K ++ EEI ++ I+ + +KGK + ++ +
Sbjct: 378 KIMGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKAAGSSGTPEDVQQTETNTDPV 437
Query: 121 FPPSFAPNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKL 180
+PP F P A MP VGQYPF G P G +
Sbjct: 438 YPPGFTPPPARNASIPMPS-----------VGQYPFFGMPMGPPPTYAQQRPIGGASPSD 497
Query: 181 EVSKISFAVPNLDDPEVKKELVAPS---------NEKLEVLEERLRAVEGTSVFGNMDAT 233
+S VP+LDDP+ +++L S ++K ++ EERLR VEG ++ +MDA
Sbjct: 498 PIS-----VPDLDDPKEQEKLKYGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAI 556
BLAST of Lcy09g019500 vs. NCBI nr
Match:
XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])
HSP 1 Score: 162.5 bits (410), Expect = 4.2e-36
Identity = 92/180 (51.11%), Postives = 114/180 (63.33%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
+++AEQEKT++DIEE+REK+D I LEKGK D PI PQ P+PP + P +
Sbjct: 3 DQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPL 62
Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
R +AE MPQ+TTYNPL+D+P+GQYP K Q QIP + + E V
Sbjct: 63 RPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ--QIP----TNIIFREPEQMMSPPTV 122
Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
NL K + V A S EK EVLEERLRA+EGT VFGN+DA+QLCLV +VIPPKFK
Sbjct: 123 XNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFK 176
BLAST of Lcy09g019500 vs. NCBI nr
Match:
XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])
HSP 1 Score: 154.1 bits (388), Expect = 1.5e-33
Identity = 94/183 (51.37%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSF---A 115
+ ++EQEKT++DIEE+REK+DAI+ ALEKGK + + + P PQ F PSF
Sbjct: 4 DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63
Query: 116 PNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKIS 175
P+ R + E M Q+TTYNPL+DIP GQ+P PL + PQ P AG + + E
Sbjct: 64 PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGP--PQAP----AGIIFQEPEQVIAP 123
Query: 176 FAVPNLDDPEVKKE---LVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPP 233
V NL P+ K+ APS+EKLEVLEERLRAVEGT VFGN+DA+QLCL +VIPP
Sbjct: 124 PTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPP 180
BLAST of Lcy09g019500 vs. NCBI nr
Match:
XP_022149382.1 (uncharacterized protein LOC111017812 [Momordica charantia])
HSP 1 Score: 146.0 bits (367), Expect = 4.1e-31
Identity = 91/180 (50.56%), Postives = 114/180 (63.33%), Query Frame = 0
Query: 56 EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
+++AEQEK ++DIEE+REK+D I+ ALEKGK V D T P+ + Q P+P + P +
Sbjct: 3 DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPL 62
Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
R +AE M Q+TTYNPL+DI VGQYP P K Q QIP + + E V
Sbjct: 63 RLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQ--QIP----TNIIFREPEQMMPPPTV 122
Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
NL VK + V PSNEK EVLEERL AVEGT VFGN+DA+QLCL+ +VI KFK
Sbjct: 123 LNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFK 176
BLAST of Lcy09g019500 vs. NCBI nr
Match:
XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])
HSP 1 Score: 101.3 bits (251), Expect = 1.2e-17
Identity = 74/233 (31.76%), Postives = 105/233 (45.06%), Query Frame = 0
Query: 1 MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIRRDLGVYHAYNTRRRTKIMEERAE 60
++RRA GFAEW DLR N + + ++L FL MI R+LG +
Sbjct: 337 VSRRANGFAEWAADLRINFFSIRPHSDDLNRFLKMICRELGHF----------------- 396
Query: 61 QEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNIRTIAE 120
KGK+VV+ P+++ + +PP F P +
Sbjct: 397 ----------------------GKGKVVVETAQSSNPVQDTDDPI-YPPGFTPRHMNATQ 456
Query: 121 TSMPQH-TTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLD 180
+ QH NPL D+P P +P Q A +KI
Sbjct: 457 SQTAQHYVAMNPLFDVP--------------PPVPDIEQLEAQ------AKIQ------- 500
Query: 181 DPEVKKELVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
++ + P+ +KL+VLEERLRA+EGT V+GN+DATQLCLVP ++IP KFK
Sbjct: 517 --DMGQNENTPAKQKLDVLEERLRAIEGTDVYGNIDATQLCLVPGLIIPTKFK 500
BLAST of Lcy09g019500 vs. NCBI nr
Match:
XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])
HSP 1 Score: 99.0 bits (245), Expect = 5.8e-17
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0
Query: 123 MPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPE 182
MPQ+TTYNPL+D+PVGQY P K Q QIP + + E V NL D
Sbjct: 1 MPQYTTYNPLYDVPVGQYLHPFVKGAQ--QIP----TNIIFREPEQMMSPPTVLNLGDLL 60
Query: 183 VKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
K + V APSNEK EVL+ERLRA+E T VFGN+DA+QLC V +VIPPK K
Sbjct: 61 AKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLVIPPKLK 107
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DZ90 | 2.1e-36 | 51.11 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1 | [more] |
A0A6J1DM29 | 7.3e-34 | 51.37 | LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... | [more] |
A0A6J1D7T3 | 2.0e-31 | 50.56 | uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A6J1D099 | 2.8e-17 | 53.10 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1 | [more] |
A0A061EFL3 | 3.6e-17 | 32.16 | Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018989 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_022157796.1 | 4.2e-36 | 51.11 | LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia] | [more] |
XP_022155098.1 | 1.5e-33 | 51.37 | LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... | [more] |
XP_022149382.1 | 4.1e-31 | 50.56 | uncharacterized protein LOC111017812 [Momordica charantia] | [more] |
XP_031738551.1 | 1.2e-17 | 31.76 | LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus] | [more] |
XP_022147189.1 | 5.8e-17 | 53.10 | LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |