Lcy09g019500 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g019500
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGag-pro-like protein
LocationChr09: 44080008 .. 44080908 (+)
RNA-Seq ExpressionLcy09g019500
SyntenyLcy09g019500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGGTACTTTGGTCACTTTCATTAATGTTCCTTGTCTCCTCGTTTTCCAACTCCCTAATTGTTTATTTTGTAGAAATATTCATTTTTAATAAAATTTCATTCATTCGTGCATATTGTTCTTTCTTCTATTTCCTTTCTTTTACTTACTCTAAGAATTTTCTTTTAAAAATAAAAAACAGAACAATAAAATAACTCGTTCAACAAGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA

mRNA sequence

ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA

Coding sequence (CDS)

ATGGCTAGGAGAGCTCGAGGATTTGCAGAATGGGAAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGTAGAGACCTTGGAGTCTACCACGCTTACAACACTAGGCGTAGAACAAAGATTATGGAGGAAAGGGCTGAACAAGAGAAGACTCAGCGGGACATCGAGGAAATCAGGGAAAAGGTTGATGCAATTATTGCTGCTTTAGAAAAGGGCAAAATGGTGGTAGATATGACTGCACCGGACACTCCGATCGAAAATCCTCAAGCTGGCCTACCATTTCCACCTAGTTTCGCTCCAAATATTCGTACGATAGCAGAAACGTCCATGCCACAACATACTACCTATAATCCCTTACATGACATACCTGTAGGGCAATACCCTTTTCCACTATTTAAAGAAGGCCAAATTCCCCAAATCCCCGTGGCTAGCCAAGCTGGTGCTTCTTATTTAAAGCTAGAAGTTTCAAAAATATCTTTTGCGGTCCCTAACTTGGATGATCCAGAAGTGAAGAAGGAGCTAGTAGCGCCCTCTAATGAAAAACTTGAAGTTTTGGAGGAAAGATTGAGGGCGGTTGAGGGCACTAGTGTTTTTGGGAACATGGATGCCACTCAATTATGCTTGGTTCCAGACGTTGTGATCCCACCGAAATTCAAATGA

Protein sequence

MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIRRDLGVYHAYNTRRRTKIMEERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPEVKKELVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK
Homology
BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.1e-36
Identity = 92/180 (51.11%), Postives = 114/180 (63.33%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
           +++AEQEKT++DIEE+REK+D I   LEKGK   D      PI  PQ   P+PP + P +
Sbjct: 3   DQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPL 62

Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
           R +AE  MPQ+TTYNPL+D+P+GQYP    K  Q  QIP        + + E       V
Sbjct: 63  RPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ--QIP----TNIIFREPEQMMSPPTV 122

Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            NL     K + V   A S EK EVLEERLRA+EGT VFGN+DA+QLCLV  +VIPPKFK
Sbjct: 123 XNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFK 176

BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.3e-34
Identity = 94/183 (51.37%), Postives = 119/183 (65.03%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSF---A 115
           + ++EQEKT++DIEE+REK+DAI+ ALEKGK + + + P      PQ    F PSF    
Sbjct: 4   DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63

Query: 116 PNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKIS 175
           P+ R + E  M Q+TTYNPL+DIP GQ+P PL +    PQ P    AG  + + E     
Sbjct: 64  PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGP--PQAP----AGIIFQEPEQVIAP 123

Query: 176 FAVPNLDDPEVKKE---LVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPP 233
             V NL  P+  K+     APS+EKLEVLEERLRAVEGT VFGN+DA+QLCL   +VIPP
Sbjct: 124 PTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPP 180

BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match: A0A6J1D7T3 (uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017812 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 91/180 (50.56%), Postives = 114/180 (63.33%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
           +++AEQEK ++DIEE+REK+D I+ ALEKGK V D T    P+ + Q   P+P  + P +
Sbjct: 3   DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPL 62

Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
           R +AE  M Q+TTYNPL+DI VGQYP P  K  Q  QIP        + + E       V
Sbjct: 63  RLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQ--QIP----TNIIFREPEQMMPPPTV 122

Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            NL    VK + V    PSNEK EVLEERL AVEGT VFGN+DA+QLCL+  +VI  KFK
Sbjct: 123 LNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFK 176

BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-17
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 123 MPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPE 182
           MPQ+TTYNPL+D+PVGQY  P  K  Q  QIP        + + E       V NL D  
Sbjct: 1   MPQYTTYNPLYDVPVGQYLHPFVKGAQ--QIP----TNIIFREPEQMMSPPTVLNLGDLL 60

Query: 183 VKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            K + V   APSNEK EVL+ERLRA+E T VFGN+DA+QLC V  +VIPPK K
Sbjct: 61  AKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLVIPPKLK 107

BLAST of Lcy09g019500 vs. ExPASy TrEMBL
Match: A0A061EFL3 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018989 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 82/255 (32.16%), Postives = 117/255 (45.88%), Query Frame = 0

Query: 1   MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIR--------RDLGVYHAYNTRRRT 60
           +A RAR  A+   +LR    P     E L   L M+R         +  + H YNTR R+
Sbjct: 318 VAFRARVMADKTEELRREILPKDELSERLISHLKMVRDQYDKNKIPEKQILHRYNTRARS 377

Query: 61  KIM--EERAEQEKTQRDIEEIREKVDAIIAAL--EKGKMVVDMTAPDTPIENPQAGLP-- 120
           KIM  E     +K ++  EEI  ++  I+  +  +KGK     +     ++  +      
Sbjct: 378 KIMGDEHSERMDKIEKKQEEIMGQLSKILELISTDKGKKAAGSSGTPEDVQQTETNTDPV 437

Query: 121 FPPSFAPNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKL 180
           +PP F P     A   MP            VGQYPF     G  P        G +    
Sbjct: 438 YPPGFTPPPARNASIPMPS-----------VGQYPFFGMPMGPPPTYAQQRPIGGASPSD 497

Query: 181 EVSKISFAVPNLDDPEVKKELVAPS---------NEKLEVLEERLRAVEGTSVFGNMDAT 233
            +S     VP+LDDP+ +++L   S         ++K ++ EERLR VEG  ++ +MDA 
Sbjct: 498 PIS-----VPDLDDPKEQEKLKYGSVESKDNPDTHQKFDLFEERLRMVEGMGMYCSMDAI 556

BLAST of Lcy09g019500 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-36
Identity = 92/180 (51.11%), Postives = 114/180 (63.33%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
           +++AEQEKT++DIEE+REK+D I   LEKGK   D      PI  PQ   P+PP + P +
Sbjct: 3   DQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPL 62

Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
           R +AE  MPQ+TTYNPL+D+P+GQYP    K  Q  QIP        + + E       V
Sbjct: 63  RPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGAQ--QIP----TNIIFREPEQMMSPPTV 122

Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            NL     K + V   A S EK EVLEERLRA+EGT VFGN+DA+QLCLV  +VIPPKFK
Sbjct: 123 XNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGLVIPPKFK 176

BLAST of Lcy09g019500 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-33
Identity = 94/183 (51.37%), Postives = 119/183 (65.03%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSF---A 115
           + ++EQEKT++DIEE+REK+DAI+ ALEKGK + + + P      PQ    F PSF    
Sbjct: 4   DRKSEQEKTRKDIEELREKLDAILLALEKGKTIAETSNPIHEPPTPQFPPGFEPSFRPAG 63

Query: 116 PNIRTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKIS 175
           P+ R + E  M Q+TTYNPL+DIP GQ+P PL +    PQ P    AG  + + E     
Sbjct: 64  PSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRGP--PQAP----AGIIFQEPEQVIAP 123

Query: 176 FAVPNLDDPEVKKE---LVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPP 233
             V NL  P+  K+     APS+EKLEVLEERLRAVEGT VFGN+DA+QLCL   +VIPP
Sbjct: 124 PTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGLVIPP 180

BLAST of Lcy09g019500 vs. NCBI nr
Match: XP_022149382.1 (uncharacterized protein LOC111017812 [Momordica charantia])

HSP 1 Score: 146.0 bits (367), Expect = 4.1e-31
Identity = 91/180 (50.56%), Postives = 114/180 (63.33%), Query Frame = 0

Query: 56  EERAEQEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNI 115
           +++AEQEK ++DIEE+REK+D I+ ALEKGK V D T    P+ + Q   P+P  + P +
Sbjct: 3   DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPL 62

Query: 116 RTIAETSMPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAV 175
           R +AE  M Q+TTYNPL+DI VGQYP P  K  Q  QIP        + + E       V
Sbjct: 63  RLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQ--QIP----TNIIFREPEQMMPPPTV 122

Query: 176 PNLDDPEVKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            NL    VK + V    PSNEK EVLEERL AVEGT VFGN+DA+QLCL+  +VI  KFK
Sbjct: 123 LNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFK 176

BLAST of Lcy09g019500 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-17
Identity = 74/233 (31.76%), Postives = 105/233 (45.06%), Query Frame = 0

Query: 1   MARRARGFAEWERDLRENTSPMASNVEELFEFLGMIRRDLGVYHAYNTRRRTKIMEERAE 60
           ++RRA GFAEW  DLR N   +  + ++L  FL MI R+LG +                 
Sbjct: 337 VSRRANGFAEWAADLRINFFSIRPHSDDLNRFLKMICRELGHF----------------- 396

Query: 61  QEKTQRDIEEIREKVDAIIAALEKGKMVVDMTAPDTPIENPQAGLPFPPSFAPNIRTIAE 120
                                  KGK+VV+      P+++    + +PP F P      +
Sbjct: 397 ----------------------GKGKVVVETAQSSNPVQDTDDPI-YPPGFTPRHMNATQ 456

Query: 121 TSMPQH-TTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLD 180
           +   QH    NPL D+P              P +P   Q  A       +KI        
Sbjct: 457 SQTAQHYVAMNPLFDVP--------------PPVPDIEQLEAQ------AKIQ------- 500

Query: 181 DPEVKKELVAPSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
             ++ +    P+ +KL+VLEERLRA+EGT V+GN+DATQLCLVP ++IP KFK
Sbjct: 517 --DMGQNENTPAKQKLDVLEERLRAIEGTDVYGNIDATQLCLVPGLIIPTKFK 500

BLAST of Lcy09g019500 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 5.8e-17
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 123 MPQHTTYNPLHDIPVGQYPFPLFKEGQIPQIPVASQAGASYLKLEVSKISFAVPNLDDPE 182
           MPQ+TTYNPL+D+PVGQY  P  K  Q  QIP        + + E       V NL D  
Sbjct: 1   MPQYTTYNPLYDVPVGQYLHPFVKGAQ--QIP----TNIIFREPEQMMSPPTVLNLGDLL 60

Query: 183 VKKELV---APSNEKLEVLEERLRAVEGTSVFGNMDATQLCLVPDVVIPPKFK 233
            K + V   APSNEK EVL+ERLRA+E T VFGN+DA+QLC V  +VIPPK K
Sbjct: 61  AKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGLVIPPKLK 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZ902.1e-3651.11Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1[more]
A0A6J1DM297.3e-3451.37LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia... [more]
A0A6J1D7T32.0e-3150.56uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1D0992.8e-1753.10Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1[more]
A0A061EFL33.6e-1732.16Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_018989 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022157796.14.2e-3651.11LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia][more]
XP_022155098.11.5e-3351.37LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch... [more]
XP_022149382.14.1e-3150.56uncharacterized protein LOC111017812 [Momordica charantia][more]
XP_031738551.11.2e-1731.76LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus][more]
XP_022147189.15.8e-1753.10LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g019500.1Lcy09g019500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process