Lcy09g019390 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g019390
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr09: 43788866 .. 43790129 (-)
RNA-Seq Expression	Lcy09g019390
Synteny	Lcy09g019390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCTTGGGCACCTTCTCCTCCATCTACGGGTATTGGAGTTGTCTGTGTTGGATTTTGTTGTAATTTGTGAAAGAAAGTAATTGGTTGAATGCCAAGAGGTTCAAGTTGGTTGATTAATTCATGAGTTTAATGACAATAAATTAAATTCGTAAATTGTATGAACTTGAATAGGTGGTGTCTTTTCGTGTTCTACAACTGCTGTAAGTGCTCATAATTACAGAGTAATCGAATGATCTCTGTATTCTACAGCTGTTGTAAATACACATAAATACACTGTAATTAAATGTAATTACAGAGTATTTATTGTTGTCTTTCTGATTTATCAGAAAGTTACTATTTGAACAACTATAAATAGTAGCTGATTTCCTCATTTCAGAATCATTCCATTTTCGTGGGTTCTCTTATCTTTTCTTCTTTTGAGTTTGGTTTTGTTGAGAGTGAGTATCCAAGGGTTCTGCCAGATCTGTGTAGTTCGAGGTTGTTGTTCTACCGGAGTTAGTCGTTGTATCCTACTGAGACAATCGCTGTAGTCTGCTAGCAACCTGTGTAGAGCGAATAATTGTCTTCAGGACAGCGCTTTGAAAGTGTGCCTCGACTACCAATCATCACATTCTTTTGTTTTACAGGTTCTGTTCGTTTGATGTGGTTGTTGTTGTCAATCGAATCATCTACGACCATTAGAGTGAGTTTGATCTTCTAATATGGTTTAATTATGTTTTCTGTAATTTTTGTTATATACAGTATCTGTAGATATATTTACATTGTATTTGTTTGTAGCTAGTTGCATTGTAATCTGTTTGTTAGTGTGAAACAGTTTCTATATACAGCGTATTTCCAACAGTCTGCAGGAACTCGAGAGGAGAAATTATGGGTGCCTCTTCTTTGTTTTTTGACTTGGATTTCAAAGCCCCTTTTTTTGAGTTAAAAGTTATTTTCGAGGACATTTGTTTGGCAAGATCACTTGGATGTGTAAAGATGATTGTTGAATCTGACTGTGCTCAGGCAATAAGTTTTGTCCCTAAGATATCAAAACCATGGTGTGAGGTGGAGGCCTTGGTGGAAGACATTTGGTCGTTGTTGCCTTTTTTCACTAAAGTTAATTTTTCTTATATTTCTAGGAAGAAAAATAGTGTGGCTAATGGTATTGCTAAGAAAGCTAGATTATTAGGTTTGAATGAGACCTGGGTAATTTCTATCCTAGGTTGGATTGTTTCATTCATCGTTTCTGACCGCTCTTCTTCAGCCCTTGTGGCGTTATAA

mRNA sequence

ATGCTGCTTGGGCACCTTCTCCTCCATCTACGGGTATTGGAGTTGTCTGTGTTGGATTTTGTTGTAATTTGTGAAAGAAAAATCATTCCATTTTCGTGGGTTCTCTTATCTTTTCTTCTTTTGAGTTTGGTTTTGTTGAGAGTGAGTATCCAAGGGTTCTGCCAGATCTGTGTAGTTCGAGGTTCTGTTCGTTTGATGTGGTTGTTGTTGTCAATCGAATCATCTACGACCATTAGATGTGAAACAGTTTCTATATACAGCGTATTTCCAACAGTCTGCAGGAACTCGAGAGGAGAAATTATGGGTGCCTCTTCTTTGTTTTTTGACTTGGATTTCAAAGCCCCTTTTTTTGAGTTAAAAGTTATTTTCGAGGACATTTGTTTGGCAAGATCACTTGGATGTGTAAAGATGATTGTTGAATCTGACTGTGCTCAGGCAATAAGTTTTGTCCCTAAGATATCAAAACCATGGTGTGAGGTGGAGGCCTTGGTGGAAGACATTTGGTCGTTGTTGCCTTTTTTCACTAAAGTTAATTTTTCTTATATTTCTAGGAAGAAAAATAGTGTGGCTAATGGTATTGCTAAGAAAGCTAGATTATTAGGTTTGAATGAGACCTGGGTAATTTCTATCCTAGGTTGGATTGTTTCATTCATCGTTTCTGACCGCTCTTCTTCAGCCCTTGTGGCGTTATAA

Coding sequence (CDS)

ATGCTGCTTGGGCACCTTCTCCTCCATCTACGGGTATTGGAGTTGTCTGTGTTGGATTTTGTTGTAATTTGTGAAAGAAAAATCATTCCATTTTCGTGGGTTCTCTTATCTTTTCTTCTTTTGAGTTTGGTTTTGTTGAGAGTGAGTATCCAAGGGTTCTGCCAGATCTGTGTAGTTCGAGGTTCTGTTCGTTTGATGTGGTTGTTGTTGTCAATCGAATCATCTACGACCATTAGATGTGAAACAGTTTCTATATACAGCGTATTTCCAACAGTCTGCAGGAACTCGAGAGGAGAAATTATGGGTGCCTCTTCTTTGTTTTTTGACTTGGATTTCAAAGCCCCTTTTTTTGAGTTAAAAGTTATTTTCGAGGACATTTGTTTGGCAAGATCACTTGGATGTGTAAAGATGATTGTTGAATCTGACTGTGCTCAGGCAATAAGTTTTGTCCCTAAGATATCAAAACCATGGTGTGAGGTGGAGGCCTTGGTGGAAGACATTTGGTCGTTGTTGCCTTTTTTCACTAAAGTTAATTTTTCTTATATTTCTAGGAAGAAAAATAGTGTGGCTAATGGTATTGCTAAGAAAGCTAGATTATTAGGTTTGAATGAGACCTGGGTAATTTCTATCCTAGGTTGGATTGTTTCATTCATCGTTTCTGACCGCTCTTCTTCAGCCCTTGTGGCGTTATAA

Protein sequence

MLLGHLLLHLRVLELSVLDFVVICERKIIPFSWVLLSFLLLSLVLLRVSIQGFCQICVVRGSVRLMWLLLSIESSTTIRCETVSIYSVFPTVCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVPKISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISILGWIVSFIVSDRSSSALVAL

Homology

[Close]

BLAST of Lcy09g019390 vs. ExPASy TrEMBL
Match: A0A0J8BAU9 (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_7g179330 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           V R+  G+++ A S     D+ A   E   +      A + G   +++ESD    I+ + 
Sbjct: 680 VARDENGQVLRAWSRTMSHDWPAEKAEAAAVLWATEEAIAQGWSNVVLESDAQVIINAIN 739

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISIL 211
              +   +++A++ED+ +L+P F  + FS+  R+ N +A+ +AK A     +E W++   
Sbjct: 740 SRLQRRGDIQAMLEDVLNLVPSFETIKFSFCYRECNEIAHRLAKWATSNFCDEVWLVGGP 799

Query: 212 GWIVSFIVSD 222
            WI   IVSD
Sbjct: 800 SWIADLIVSD 809

[Close]

BLAST of Lcy09g019390 vs. ExPASy TrEMBL
Match: M7Z309 (Bidirectional sugar transporter SWEET14 OS=Triticum urartu OX=4572 GN=TRIUR3_00534 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-05
Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           V R+ +GE + A+S F          EL  I   I L  S+GC K+ VESDC  A+  + 
Sbjct: 399 VGRDDKGEFIAAASWFIPHVRDVDSAELMAIRNGIYLLSSIGCTKIEVESDCLFAVETLQ 458

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISIL 211
            +        A+V +   L   F K++F +  R+ N VA+ +AK    + + ++W   I 
Sbjct: 459 SMDDYMGPDSAVVAECKKLSIDFNKLSFKHCYREANRVADELAKHCFSIRVPDSWDDVIP 518

Query: 212 GWIVSFIVSDRS 224
            +I   +V+D S
Sbjct: 519 DFISHLLVNDMS 530

[Close]

BLAST of Lcy09g019390 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 32/113 (28.32%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           + R+ +GE++ AS      +    + E+  I E +   R   C  + +ESD  +AI  + 
Sbjct: 107 ILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLH 166

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNE 205
           +  +   E+  L+E+IW ++     V+  +ISR+ N VA+G+A++A    L E
Sbjct: 167 RQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRAMENDLRE 219

[Close]

BLAST of Lcy09g019390 vs. ExPASy TrEMBL
Match: M7Z366 (Ketohexokinase OS=Triticum urartu OX=4572 GN=TRIUR3_11649 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = 0


Query: 46  LRVSIQGFCQICVVRGSVR---LMWL-----LLSIESSTTIRCETVSIYSVFPTVCRNSR 105
           ++V    F +  + +G +R    MW      ++ I   T+ + ET+S       V R+ R
Sbjct: 361 IKVLATNFLRSTIPKGPIRKNDYMWRKPGYGIMKINVDTSFQYETLS--GACGAVARDYR 420

Query: 106 GEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVPKISKPW 165
           G+ + A+S F          EL  I   I LA  +GC  + +ESDC+ A+  + ++    
Sbjct: 421 GDFITAASWFVLNISGVDSAELTAIRNGIYLATHIGCNNIEIESDCSFAVDSLNQVDDYL 480

Query: 166 CEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISILGWIVSF 224
               A++ +   L+  F  ++F +  R+ N VA+ +AK +     + +W   I  +I   
Sbjct: 481 GPEVAIIIEYKQLMMDFASISFRHCYREANQVADKLAKNSFTTRSSSSWDDEIPDFISHL 540

[Close]

BLAST of Lcy09g019390 vs. ExPASy TrEMBL
Match: A0A1R3HC77 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 34/115 (29.57%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 92   VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
            V R+S G+I  ++             E+  I   + +A+  G  K++V+SDC QAI  +P
Sbjct: 1434 VLRDSTGQIRFSACKRISFVADVMQSEILAIHYGLLVAQLNGIEKLVVKSDCLQAIREIP 1493

Query: 152  KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETW 207
            K S    +   L+E+I +    F+  +F ++ R  N +A+ IA+    LG N  W
Sbjct: 1494 KGSASTWDSACLIEEIQTFASSFSLCSFKHVKRNANVLAHSIAQLDVSLGANYVW 1548

[Close]

BLAST of Lcy09g019390 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 39/123 (31.71%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 87  SVFPTVCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQA 146
           S F  + R+++G +        D  +  P  E  V+ + + L   +   K+IV+SDC+ A
Sbjct: 79  SGFSAIIRDNQGSLKVVQISSIDAVYPPPLAEAFVVLQGLRLTSKMNFKKIIVKSDCSGA 138

Query: 147 ISFVPKISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETW 206
           I    KI      V   +E+IW +   F  +NF+YI R  N +A+ +AK+ R+LG+N+ W
Sbjct: 139 IDLFLKILISDSSVRVWLEEIWEISIVFYPINFAYIPRNINKLADIVAKRTRILGINDVW 198

Query: 207 VIS 210
           + S
Sbjct: 199 MDS 201

[Close]

BLAST of Lcy09g019390 vs. NCBI nr
Match: XP_010682311.1 (PREDICTED: uncharacterized protein LOC104897185 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-08
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           VCR+  GE++G + L   + ++    E + +FE + LA++LG  K+IVESDC Q IS + 
Sbjct: 214 VCRDEVGEVLGCAVLQQHVGWEMRVAEARAVFEGVRLAKNLGVRKLIVESDCLQVISALK 273

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIA 195
             S    +   ++EDI   + FF  V +S++ R  N VA+ +A
Sbjct: 274 SKSTGASDFYLIIEDIPEFVKFFNVVVWSFVKRTGNKVAHMMA 316

[Close]

BLAST of Lcy09g019390 vs. NCBI nr
Match: XP_021748542.1 (uncharacterized protein LOC110714345 [Chenopodium quinoa])

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-06
Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           + R++ GE++ A  L  D  F A   E   +   +C+A   G  ++ VE+DC +  S+V 
Sbjct: 24  IMRDALGEVVAAMCLRVDGQFGADIAEALAMRHALCIAIESGFRRVCVETDCLKLHSYVS 83

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISIL 211
           K + P  E  ++V DI  +       +F+++ R  N VA+ +AK A        W+  + 
Sbjct: 84  KGNAPPTEFGSIVHDILHIAKGCQSCSFTFVKRSGNRVAHELAKLALSFDSLRVWLEEVP 143

Query: 212 GWIVSFIVSDRS 224
           G I  F+++D S
Sbjct: 144 GCIAEFVLADLS 155

[Close]

BLAST of Lcy09g019390 vs. NCBI nr
Match: XP_010686140.1 (PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-06
Identity = 29/103 (28.16%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 92  VCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFVP 151
           VCR++ G I+  +++    +++ P  E + + E + +A++LG  K+I+ESDC + +  + 
Sbjct: 191 VCRDTEGSILSCAAVQIRANWETPIAEARAVLEGVVMAKTLGLQKVIIESDCQRVVQALQ 250

Query: 152 KISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIA 195
           K  K       +++DI S++    +V +S++ R  N VA+ +A
Sbjct: 251 KQEKGSSSFNLIIDDIVSVILSSLQVVWSFVKRVGNRVAHELA 293

[Close]

BLAST of Lcy09g019390 vs. NCBI nr
Match: KAF2906274.1 (hypothetical protein DAI22_12g007450 [Oryza sativa Japonica Group])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-05
Identity = 36/131 (27.48%), Postives = 65/131 (49.62%), Query Frame = 0


Query: 91  TVCRNSRGEIMGASSLFFDLDFKAPFFELKVIFEDICLARSLGCVKMIVESDCAQAISFV 150
           +V R+  G ++ A+  F      AP  E   + E + LA+ +GC ++I++SDC + +  +
Sbjct: 387 SVIRDCSGGVLAAAHSFVPHLVDAPMAEAFALKEGLMLAQQIGCNRLIIQSDCMEVVQIM 446

Query: 151 PKISKPWCEVEALVEDIWSLLPFFTKVNFSYISRKKNSVANGIAKKARLLGLNETWVISI 210
                      A+ ED   L   F  +   + SR+ N VA+ +A++AR    N TWV   
Sbjct: 447 TDGGFTANSAAAIYEDCNILWSGFADITIEHCSREANQVAHNLARRAREYETNCTWVDEP 506

Query: 211 LGWIVSFIVSD 222
             +I+  +++D
Sbjct: 507 PRFILDSLMND 517

[Close]

BLAST of Lcy09g019390 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 7.7e-04
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 118 ELKVIFEDICLARSLGCVKMIVESDCAQAISFVPKISKPWCEVEALVEDIWSLLPFFTKV 177
           E   +F  +  A+S+G  K+ + SD  Q I+ +   S P  E   ++ DI +L   F  V
Sbjct: 77  EAIALFLALQYAQSIGITKLSMASDSQQLITAITSES-PSTEFYGIIFDILNLSLGFADV 136

Query: 178 NFSYISRKKNSVANGIAKKA 198
           +FS++ R +N VA+ +AK +
Sbjct: 137 SFSFVPRSENRVADELAKSS 155

The following BLAST results are available for this feature:

BLAST of Lcy09g019390 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g019390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0J8BAU9	1.9e-05	27.69	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_7g17933...	[more]
M7Z309	9.2e-05	30.30	Bidirectional sugar transporter SWEET14 OS=Triticum urartu OX=4572 GN=TRIUR3_005...	[more]
A0A6J1CP26	1.6e-04	28.32	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
M7Z366	2.7e-04	25.27	Ketohexokinase OS=Triticum urartu OX=4572 GN=TRIUR3_11649 PE=3 SV=1	[more]
A0A1R3HC77	2.7e-04	29.57	Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV...	[more]

BLAST of Lcy09g019390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902513.1	1.5e-09	31.71	uncharacterized protein LOC120089172 [Benincasa hispida]	[more]
XP_010682311.1	8.3e-08	35.92	PREDICTED: uncharacterized protein LOC104897185 [Beta vulgaris subsp. vulgaris]	[more]
XP_021748542.1	1.6e-06	28.79	uncharacterized protein LOC110714345 [Chenopodium quinoa]	[more]
XP_010686140.1	3.5e-06	28.16	PREDICTED: uncharacterized protein LOC104900422 [Beta vulgaris subsp. vulgaris]	[more]
KAF2906274.1	1.3e-05	27.48	hypothetical protein DAI22_12g007450 [Oryza sativa Japonica Group]	[more]

BLAST of Lcy09g019390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09490.1	7.7e-04	32.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 87..197 e-value: 1.2E-13 score: 50.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 76..199 e-value: 1.4E-5 score: 27.0
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 92..195 e-value: 1.33016E-8 score: 49.62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g019390.1	Lcy09g019390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity