Lcy09g006040 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g006040
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Regulator of nonsense transcripts UPF2
Location	Chr09: 5243742 .. 5244251 (+)
RNA-Seq Expression	Lcy09g006040
Synteny	Lcy09g006040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGAGTATGGATCAGCGCAGGCAAGAGCTACGTGGCCGACCAACATTGAATATGATGATACCAATGAACTTGTTTGAGGGAACGGCGAGGGACCACCATGGAAGGGGGGTTGGGGGAGAGAGCGGGGATGAGGCGTTGGACGAGGATGCTGGTGGAAGCAAGGAGGTTCAGGTGAAAGTTCTTGTTAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAAGAAGCAGCGGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGAGAAGAGGAAGAACTTAATGGTTTAGGCTCCCAAACAATGAACTGGATGCAGACAGGGGGCAATAGAGTCCCTACTCGGGGCAACAATTGGGAGGTGTCTGGCGGGAGGAGTGGTGGGTCGCGTCATCCGCATCATCGGTATCCTGGCAGTGGCATGCATTACAGTAGAAAGAAGTGA

mRNA sequence

ATGCAGGAGAGTATGGATCAGCGCAGGCAAGAGCTACGTGGCCGACCAACATTGAATATGATGATACCAATGAACTTGTTTGAGGGAACGGCGAGGGACCACCATGGAAGGGGGGTTGGGGGAGAGAGCGGGGATGAGGCGTTGGACGAGGATGCTGGTGGAAGCAAGGAGGTTCAGGTGAAAGTTCTTGTTAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAAGAAGCAGCGGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGAGAAGAGGAAGAACTTAATGGTTTAGGCTCCCAAACAATGAACTGGATGCAGACAGGGGGCAATAGAGTCCCTACTCGGGGCAACAATTGGGAGGTGTCTGGCGGGAGGAGTGGTGGGTCGCGTCATCCGCATCATCGGTATCCTGGCAGTGGCATGCATTACAGTAGAAAGAAGTGA

Coding sequence (CDS)

ATGCAGGAGAGTATGGATCAGCGCAGGCAAGAGCTACGTGGCCGACCAACATTGAATATGATGATACCAATGAACTTGTTTGAGGGAACGGCGAGGGACCACCATGGAAGGGGGGTTGGGGGAGAGAGCGGGGATGAGGCGTTGGACGAGGATGCTGGTGGAAGCAAGGAGGTTCAGGTGAAAGTTCTTGTTAAGCGTGGGAACAAGCAGCAAACGAAGAAGATGTACATCCCTCGTGATTGCGCACTTTTACAGAGCACAAAACAGAAAGAAGCAGCGGAGCTAGAAGAGAAGCAAGATATTAAGAGGTTAATCTTAGAGTACAATGACCGAGAAGAGGAAGAACTTAATGGTTTAGGCTCCCAAACAATGAACTGGATGCAGACAGGGGGCAATAGAGTCCCTACTCGGGGCAACAATTGGGAGGTGTCTGGCGGGAGGAGTGGTGGGTCGCGTCATCCGCATCATCGGTATCCTGGCAGTGGCATGCATTACAGTAGAAAGAAGTGA

Protein sequence

MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQVKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLGSQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK

Homology

[Close]

BLAST of Lcy09g006040 vs. ExPASy Swiss-Prot
Match: F4IUX6 (Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-48
Identity = 107/170 (62.94%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRG-VGGESGDEALDEDAGGSKEVQ 60
            +QESM+QR+ ELRGRP LNM IPM++FEG+ +DHH  G V GE+G+E LDE+ G  +EVQ
Sbjct: 1015 LQESMEQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQ 1074

Query: 61   VKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGL 120
            VKVLVKRGNKQQT++M IP DCAL+QSTKQKEAAELEEKQDIKRL+LEYN+R+EEE NGL
Sbjct: 1075 VKVLVKRGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGL 1134

Query: 121  GSQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            G+Q +NW  +GG+R  TR        G+SGGSRH  + + G G  Y  ++
Sbjct: 1135 GTQILNW-TSGGSRGSTRTGE---GSGKSGGSRHRFYYHQGGGGSYHARR 1180

[Close]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL
Match: A0A5D3C2X5 (Regulator of nonsense transcripts UPF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002200 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 932  MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 991

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 992  KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1051

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSGMHYSRKK
Sbjct: 1052 SQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSRKK 1100

[Close]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL
Match: A0A1S3CJK4 (LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 OS=Cucumis melo OX=3656 GN=LOC103501680 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.0e-85
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 1026 MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 1085

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1086 KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1145

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSGMHYSRKK
Sbjct: 1146 SQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSRKK 1194

[Close]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL
Match: A0A0A0KS34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497020 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.9e-84
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 1027 MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 1086

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1087 KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1146

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSG+HYSRKK
Sbjct: 1147 SQTMNWMQTGGNRVPTRGNNWEGSGGRSGGSRHPHHRYPGSGVHYSRKK 1195

[Close]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL
Match: A0A6J1BVY0 (regulator of nonsense transcripts UPF2 OS=Momordica charantia OX=3673 GN=LOC111006232 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 160/169 (94.67%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQE+RGRPTLNMMIPMNLFEGT RDHHGRGVGGESGDEALDEDAGG+KEVQV
Sbjct: 1025 MQESMDQRRQEIRGRPTLNMMIPMNLFEGT-RDHHGRGVGGESGDEALDEDAGGTKEVQV 1084

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKM+IPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1085 KVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1144

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGG RHPHHRY G G+HYSRKK
Sbjct: 1145 SQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK 1192

[Close]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL
Match: A0A6J1FEV2 (regulator of nonsense transcripts UPF2-like OS=Cucurbita moschata OX=3662 GN=LOC111445073 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 157/169 (92.90%), Postives = 160/169 (94.67%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDEAL+EDAGGSKEVQV
Sbjct: 1023 MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEALEEDAGGSKEVQV 1082

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRD ALLQSTKQKEA ELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1083 KVLVKRGNKQQTKKMYIPRDSALLQSTKQKEAEELEEKQDIKRLILEYNDREEEELNGLG 1142

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTG NR PTRGNNW+ SGGRSGGS HPHHRYPG GMHYSRKK
Sbjct: 1143 SQTMNWMQTGNNRAPTRGNNWDASGGRSGGSHHPHHRYPGGGMHYSRKK 1191

[Close]

BLAST of Lcy09g006040 vs. NCBI nr
Match: TYK05735.1 (regulator of nonsense transcripts UPF2 [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-85
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 932  MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 991

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 992  KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1051

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSGMHYSRKK
Sbjct: 1052 SQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSRKK 1100

[Close]

BLAST of Lcy09g006040 vs. NCBI nr
Match: XP_008463566.1 (PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 6.1e-85
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 1026 MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 1085

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1086 KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1145

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSGMHYSRKK
Sbjct: 1146 SQTMNWMQTGGNRVPTRGNNWEASGGRSGGSRHPHHRYPGSGMHYSRKK 1194

[Close]

BLAST of Lcy09g006040 vs. NCBI nr
Match: XP_004143811.1 (regulator of nonsense transcripts UPF2 [Cucumis sativus] >KGN51237.1 hypothetical protein Csa_008908 [Cucumis sativus])

HSP 1 Score: 321.6 bits (823), Expect = 4.0e-84
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG+ RDHHGRG GGESGDE LDEDAGGSKEVQV
Sbjct: 1027 MQESMDQRRQELRGRPTLNMMIPMNLFEGSTRDHHGRGAGGESGDEGLDEDAGGSKEVQV 1086

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1087 KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1146

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGGSRHPHHRYPGSG+HYSRKK
Sbjct: 1147 SQTMNWMQTGGNRVPTRGNNWEGSGGRSGGSRHPHHRYPGSGVHYSRKK 1195

[Close]

BLAST of Lcy09g006040 vs. NCBI nr
Match: XP_038890797.1 (regulator of nonsense transcripts UPF2 [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 162/169 (95.86%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQELRGRPTLNMMIPMNLFEG +RDHHGRGVGGESGDE LDEDAGGSKEVQV
Sbjct: 1026 MQESMDQRRQELRGRPTLNMMIPMNLFEG-SRDHHGRGVGGESGDEGLDEDAGGSKEVQV 1085

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKMYIPRDC LLQSTKQKEAAELEEKQDIKRLILEYNDREEEE NGLG
Sbjct: 1086 KVLVKRGNKQQTKKMYIPRDCTLLQSTKQKEAAELEEKQDIKRLILEYNDREEEEHNGLG 1145

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGG RHPHHRYPGSGMHYSRKK
Sbjct: 1146 SQTMNWMQTGGNRVPTRGNNWEASGGRSGGLRHPHHRYPGSGMHYSRKK 1193

[Close]

BLAST of Lcy09g006040 vs. NCBI nr
Match: XP_022133716.1 (regulator of nonsense transcripts UPF2 [Momordica charantia])

HSP 1 Score: 312.0 bits (798), Expect = 3.2e-81
Identity = 160/169 (94.67%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRGVGGESGDEALDEDAGGSKEVQV 60
            MQESMDQRRQE+RGRPTLNMMIPMNLFEGT RDHHGRGVGGESGDEALDEDAGG+KEVQV
Sbjct: 1025 MQESMDQRRQEIRGRPTLNMMIPMNLFEGT-RDHHGRGVGGESGDEALDEDAGGTKEVQV 1084

Query: 61   KVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 120
            KVLVKRGNKQQTKKM+IPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG
Sbjct: 1085 KVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGLG 1144

Query: 121  SQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            SQTMNWMQTGGNRVPTRGNNWE SGGRSGG RHPHHRY G G+HYSRKK
Sbjct: 1145 SQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK 1192

[Close]

BLAST of Lcy09g006040 vs. TAIR 10
Match: AT2G39260.1 (binding;RNA binding )

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-49
Identity = 107/170 (62.94%), Postives = 133/170 (78.24%), Query Frame = 0


Query: 1    MQESMDQRRQELRGRPTLNMMIPMNLFEGTARDHHGRG-VGGESGDEALDEDAGGSKEVQ 60
            +QESM+QR+ ELRGRP LNM IPM++FEG+ +DHH  G V GE+G+E LDE+ G  +EVQ
Sbjct: 1015 LQESMEQRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQ 1074

Query: 61   VKVLVKRGNKQQTKKMYIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELNGL 120
            VKVLVKRGNKQQT++M IP DCAL+QSTKQKEAAELEEKQDIKRL+LEYN+R+EEE NGL
Sbjct: 1075 VKVLVKRGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGL 1134

Query: 121  GSQTMNWMQTGGNRVPTRGNNWEVSGGRSGGSRHPHHRYPGSGMHYSRKK 170
            G+Q +NW  +GG+R  TR        G+SGGSRH  + + G G  Y  ++
Sbjct: 1135 GTQILNW-TSGGSRGSTRTGE---GSGKSGGSRHRFYYHQGGGGSYHARR 1180

The following BLAST results are available for this feature:

BLAST of Lcy09g006040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IUX6	4.8e-48	62.94	Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 P...	[more]

BLAST of Lcy09g006040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2X5	3.0e-85	96.45	Regulator of nonsense transcripts UPF2 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CJK4	3.0e-85	96.45	LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 OS=Cucumis melo OX=3...	[more]
A0A0A0KS34	1.9e-84	95.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G497020 PE=4 SV=1	[more]
A0A6J1BVY0	1.5e-81	94.67	regulator of nonsense transcripts UPF2 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FEV2	2.0e-81	92.90	regulator of nonsense transcripts UPF2-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Lcy09g006040 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05735.1	6.1e-85	96.45	regulator of nonsense transcripts UPF2 [Cucumis melo var. makuwa]	[more]
XP_008463566.1	6.1e-85	96.45	PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2 [Cucumis ...	[more]
XP_004143811.1	4.0e-84	95.86	regulator of nonsense transcripts UPF2 [Cucumis sativus] >KGN51237.1 hypothetica...	[more]
XP_038890797.1	2.2e-82	95.86	regulator of nonsense transcripts UPF2 [Benincasa hispida]	[more]
XP_022133716.1	3.2e-81	94.67	regulator of nonsense transcripts UPF2 [Momordica charantia]	[more]

BLAST of Lcy09g006040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39260.1	3.4e-49	62.94	binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007193	Up-frameshift suppressor 2, C-terminal	PFAM	PF04050	Upf2	coord: 1..107 e-value: 6.2E-28 score: 98.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..56
None	No IPR available	PANTHER	PTHR12839:SF8	SUBFAMILY NOT NAMED	coord: 1..167
IPR039762	Nonsense-mediated mRNA decay protein Nmd2/UPF2	PANTHER	PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	coord: 1..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g006040.1	Lcy09g006040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0005844	polysome
molecular_function	GO:0003723	RNA binding