Lcy09g005920 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g005920
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Embryo-specific protein ATS3A
Location	Chr09: 5160546 .. 5160936 (-)
RNA-Seq Expression	Lcy09g005920
Synteny	Lcy09g005920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCACCTGGGCTGAAACCGGAGATCAAACTGGAATCATCAGCGATTCAGAAGGCCATGTGATTAAACTGGAATCAAACTGGTGAAAGACTTGAATAAGAATCCCAACCTGCATACTCCAAAAGAGTTATTAACATTAAGAAACAAGGTAGCAGGTTTGAAAGATGTGCTATTGATATGTTCCAGGCAAGTGGACACTGCATGAGCCACTCAATTTGCGCACTGTACCTGAAGAAAGTTGGGTCTGATAGCTGGAGAACTCGTTGGGTGCGAGTGTTGCTTACAAGTGATGCTGGATTAGTCCCAACATCTTACAAGTTCTATAGGGGTTTGATGCTTTACGTTGCTGGCTCTAATGGTAGTGGGTGCTTCAAGCTTGGCCACCCTTAA

mRNA sequence

ATGCGCACCTGGGCTGAAACCGGAGATCAAACTGGAATCATCAGCGATTCAGAAGGCCATGCAAGTGGACACTGCATGAGCCACTCAATTTGCGCACTGTACCTGAAGAAAGTTGGGTCTGATAGCTGGAGAACTCGTTGGGTGCGAGTGTTGCTTACAAGTGATGCTGGATTAGTCCCAACATCTTACAAGTTCTATAGGGGTTTGATGCTTTACGTTGCTGGCTCTAATGGTAGTGGGTGCTTCAAGCTTGGCCACCCTTAA

Coding sequence (CDS)

ATGCGCACCTGGGCTGAAACCGGAGATCAAACTGGAATCATCAGCGATTCAGAAGGCCATGCAAGTGGACACTGCATGAGCCACTCAATTTGCGCACTGTACCTGAAGAAAGTTGGGTCTGATAGCTGGAGAACTCGTTGGGTGCGAGTGTTGCTTACAAGTGATGCTGGATTAGTCCCAACATCTTACAAGTTCTATAGGGGTTTGATGCTTTACGTTGCTGGCTCTAATGGTAGTGGGTGCTTCAAGCTTGGCCACCCTTAA

Protein sequence

MRTWAETGDQTGIISDSEGHASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAGLVPTSYKFYRGLMLYVAGSNGSGCFKLGHP

Homology

[Close]

BLAST of Lcy09g005920 vs. ExPASy TrEMBL
Match: A0A540MYA3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010582 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C LYLKKVGSD WR  WVRVL   D G  +VP SY FY
Sbjct: 94  ASGQCMSQRVCYLYLKKVGSDDWRPGWVRVLHRQDGGRVVVPVSYMFY 141

[Close]

BLAST of Lcy09g005920 vs. ExPASy TrEMBL
Match: A0A498JEQ2 (CN hydrolase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024033 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C LYLKKVGSD WR  WVRVL   D G  +VP SY FY
Sbjct: 399 ASGQCMSRRVCYLYLKKVGSDDWRPGWVRVLHRQDGGRVVVPVSYVFY 446

[Close]

BLAST of Lcy09g005920 vs. ExPASy TrEMBL
Match: A0A6A1VYI8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G014578 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.7e-07
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG-LVPTSYKFY 67
           ASG CM+  +C+LYLKKVGSD WR  WV+VL   D G +VP SY FY
Sbjct: 145 ASGPCMTQRVCSLYLKKVGSDDWRPGWVKVLHRQDGGHVVPVSYMFY 191

[Close]

BLAST of Lcy09g005920 vs. ExPASy TrEMBL
Match: B9HTZ3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G214400 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.4e-07
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG-LVPTSYKFY 67
           ASG CM  S+C+LYLKKVG+D WR  WV+VL    +G LVP SY FY
Sbjct: 107 ASGTCMKQSVCSLYLKKVGTDDWRPGWVKVLHQESSGALVPVSYVFY 153

[Close]

BLAST of Lcy09g005920 vs. ExPASy TrEMBL
Match: A0A2P6SJU5 (Putative PLAT/LH2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0364691 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.3e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG-LVPTSYKFY 67
           ASG CMS  +C+LYLKKVGSD WR  WV+VL   D G  VP SY FY
Sbjct: 110 ASGPCMSSRVCSLYLKKVGSDDWRPGWVKVLHRQDGGHEVPVSYVFY 156

[Close]

BLAST of Lcy09g005920 vs. NCBI nr
Match: XP_023904036.1 (embryo-specific protein ATS3A-like [Quercus suber])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG-LVPTSYKFY 67
           ASG CMS  +C+LYLKKVGSD+WR  WV+VL T + G +VP SY FY
Sbjct: 107 ASGPCMSQRVCSLYLKKVGSDNWRPGWVKVLHTQEGGHVVPVSYMFY 153

[Close]

BLAST of Lcy09g005920 vs. NCBI nr
Match: XP_009357620.1 (PREDICTED: uncharacterized protein LOC103948335 [Pyrus x bretschneideri])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C+LYLKKVGSD WR  WV+VL   D G  +VP SY FY
Sbjct: 97  ASGQCMSRRVCSLYLKKVGSDDWRPGWVKVLHRQDGGRVVVPVSYMFY 144

[Close]

BLAST of Lcy09g005920 vs. NCBI nr
Match: XP_008384318.1 (embryo-specific protein ATS3A-like [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C LYLKKVGSD WR  WVRVL   D G  +VP SY FY
Sbjct: 95  ASGQCMSRRVCYLYLKKVGSDDWRPGWVRVLHRQDGGRVVVPVSYMFY 142

[Close]

BLAST of Lcy09g005920 vs. NCBI nr
Match: TQE03775.1 (hypothetical protein C1H46_010582 [Malus baccata])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C LYLKKVGSD WR  WVRVL   D G  +VP SY FY
Sbjct: 94  ASGQCMSQRVCYLYLKKVGSDDWRPGWVRVLHRQDGGRVVVPVSYMFY 141

[Close]

BLAST of Lcy09g005920 vs. NCBI nr
Match: RXH94349.1 (hypothetical protein DVH24_024033 [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 21  ASGHCMSHSICALYLKKVGSDSWRTRWVRVLLTSDAG--LVPTSYKFY 67
           ASG CMS  +C LYLKKVGSD WR  WVRVL   D G  +VP SY FY
Sbjct: 399 ASGQCMSRRVCYLYLKKVGSDDWRPGWVRVLHRQDGGRVVVPVSYVFY 446

The following BLAST results are available for this feature:

BLAST of Lcy09g005920 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g005920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540MYA3	1.3e-07	64.58	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010582 PE=4 SV=1	[more]
A0A498JEQ2	1.7e-07	64.58	CN hydrolase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_02403...	[more]
A0A6A1VYI8	3.7e-07	61.70	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G014578 PE=4 SV=1	[more]
B9HTZ3	6.4e-07	61.70	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G214400 PE=4 ...	[more]
A0A2P6SJU5	8.3e-07	63.83	Putative PLAT/LH2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOB...	[more]

BLAST of Lcy09g005920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023904036.1	1.6e-07	63.83	embryo-specific protein ATS3A-like [Quercus suber]	[more]
XP_009357620.1	2.6e-07	62.50	PREDICTED: uncharacterized protein LOC103948335 [Pyrus x bretschneideri]	[more]
XP_008384318.1	2.6e-07	64.58	embryo-specific protein ATS3A-like [Malus domestica]	[more]
TQE03775.1	2.6e-07	64.58	hypothetical protein C1H46_010582 [Malus baccata]	[more]
RXH94349.1	3.5e-07	64.58	hypothetical protein DVH24_024033 [Malus domestica]	[more]

BLAST of Lcy09g005920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 21..65 e-value: 3.4E-7 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g005920.1	Lcy09g005920.1	mRNA