Lcy09g003010 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g003010
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA-directed RNA polymerase
Location	Chr09: 2565921 .. 2569910 (-)
RNA-Seq Expression	Lcy09g003010
Synteny	Lcy09g003010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGTAAGTAACTTCTTAGGCAATGTATATACACAGCAAGTACTAGTTTGTAGCTAGTCTTGATTTATTTTATATAGTTCTAGCAATCAGTGATCCTTTCCATTTATAAGTTCCTATTTGAGCTTCGTAAATGTAAATGTATTTCCTTGCTTACAATGTTAATTTGTTTCCTATTTCCTTTTCACCTAATTTTTTTTTACCTTAAAATAAATTCAAGCTCTTTGATTGTGGAATCTATGATATGTAGTAGAACTCCAGAACATAATGTGCACAGGTTAGTCCTTCATGTTATTTGGCAACAATCTTGTTTAACCAGCCTTTCATTTTTGAAAAAAAATAAATGAAATGTCAGCCATGCTACCTTGGCCAGCAATTCTACTAAAAATTTCAATCTAAGTGGGAAGGGTATATCCAATATTCTTGGACATAACACGACAAAGAAAAGCATCCTCCGGAATGCTATCTGCAACATTGTTGGAAAAGAGCATTTGACAAGAACTAAACTCGATGGAAGAAAATTTACTGATAGCTGCTAGGTATGGTACATTAACTTGGAGATAAAAATTTTCATGCAAAGAGCGTGTGATTTTATTGCTCATAGTTGCATAAGAAAATTTTCTTTAATATAACATGTCTATTCCCTCTCGAGGCATTCGTCAAGGGGATCCCCTTTCTCCTTTCCTTTTCATATTGGTGTCTGATTGCCTAAGTCGCTTATTATCTCACAGTGCTTATATGGGTCGAATTGTTTCTCATCCGATTGGAAATTCACAACTTCACGTGAATCATTTACAATTTGCTGATGATACATTATTATTCTCCATATTTCATAAGGATGCATTGGTTAACATGTTCGAAATTGTTAAAATTTTTGAGCTGGCTTCTGGGCTGAATATTAACTATTCCAAGAGTGAAGTTCTGGGAATTCATTTAGAAGATTCGGAATTGGAATGGTTGACATCAACGTTTGGCTGTAAACAAGGGATTTGGCCCTCCACTTACCTTGGTTTACCTTTGGGAGGCAACGCAAAAACTATACCTTTTTGGCAGCCAGTGATTGAAAGAATCCAACATAAGCTTCATAGTTGGAAATATTCCTATATTTCGAAAGGTGGTCGACATACTCTTTCTCAAGCAGTTCTATCTAGTATGCCAATATATTATTTATCCTTATTCAAATTGCCAAGAAAGGTTGCAAGATCTCTTGATAAGCTGCTTCGTGATTTCTTTTGGGAAGGATCTAGAGGTGAGGGTGGTATGCACAATATTAATTGGGCAACAACACAACTTCCACATCTGTTGGGGGGTATTGGTATTGGTAATTTCCAGAATCGCAATCTAGCTCTTCTAGCAAAGTGGATTTGGAGATTTTTACATGAGGATAACACTCTATGGCATAAACTGATTGTAGCTAAGTATTATAACTCTAATTTGAGTAGTGTTTGGCCTAGCATTATTCAGAGAAGTTCACACAAATCTCCTTGGCGATTTATTTCTTCTACTATGGACCTGGTATATTCTCGCGCAAAAAGAAGTTTGGGTAATGGTCTCGCTACATCTTTCTGGCATGATTCGTGGTTAAGTTGTGGTATTCTGGCTACAAATTTTCCTCGGCTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAAACAGCGTGGGACCTGAGTCTTAGGCGTAATTTGAATGATTTAGAGACAGAAGAATGGGTGGAACTATCTATTATTCTTTCCTCCATCAGGCTTCAGAACTGTAATGATTCCTGGTCATGGCCGTTGGAATCGTCCAATATTTTTTCTGTTAAATCCCTTATGAAGGATCTTGTAGACTATCCAGTTGTTGAGGATAATCTCTATAAGATAATTTGGACCGATTCCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACATCTGATCGACTTCAACGTAGGATGCCTCATTTTCATCTGTCCCCTTCTTGGTGCATTATGTGTGCCGCTAGTTCAGAACATTCTGGGCACCTATTTGTTCACTGTTCCTTCGCTTCTAGATAACATGTCTCCAGGGACAGTGGCGTACTCTCTTTCTGACCAATGTATTTTGAAAATACTTGATAGATTATATGAAACCAAATAGTAGTTTGTTGTAAAGAGCTTACTTATTAAAGGATGTTGATTTATTGTCATTGTTCTGGGTACCTTCCTAGGAATTATTTATTCTCTTAATCTTTCCGTGGTTGCTGAGGAAATGAAATAGAGACTTGTGAAGAATTCTTTTGAGTGGGGTAGAGAGAGAATGACATTTTGTTGTCTCACATGGTGAGTTTGTGTGACTAAGTACCTAAGTTGTCTACTTTGGAGGATTTACACAGTGAAAATTGGTGTCTAAGAATCCCTGTTCATTGAGGATATGGCTTTGAGATTCTGGGTAATTTGGGCTTGGGTAGTATTAGAACTTCAAATTATGTCTTAGCTTTGAGGCATGAGAACTTCTGTCGGGAACATCTTCACGCTACACTGCATTATTGCTAGTAATTATGCTGACTTTAATCACTTCGGGGTGGAACGTTGTTGAGGCAGTAGTTGAAGCCAGTGGACTTCCATGTTTACATCATAGGCCTATTTTCAGTCTCTAATCTCTATCAATATTAGGAATCAAGTTTAAACAAAATTCTGAGAGGATAGATGGATTTGCAAGTCTATTGGTGTTTGTATTTTCTTGAACTCGTTCCACTTTGCTATAGCCCGTCAATATTTAGTTGATGCTGTAGTTTCTTTTTTTTAATAGTTAGGAGGAAACATTGGAATTTTATTGATGAATGAAATGTACAAAAGGGGAGAAAAAAAGATCTCCAACTCGTATTTGATGAAAACTATTAAACGTGGAGTTTGATACTTTTAAGTAATTTTGATGATTTATAAACAACAAAATAGATAGTTATGTTTGAGTTCTTAGAGGGTTTCTTACTTCACCTTAAGGGAGCTTTACAAATCTTTTTCTTTTTTCATTTTCTACAACAAGATCCTTATGTGCTTGAACCTAGTATTACTTGGCTTCACAGAGAGGCAACATATAGTTTGATGTTTGTAAAAGCAATCTACAGTTTGTCAGGGACTCAATCTGATTTTAGAAGTTGAGATGTTAGGATCCTGATATCCTTTTATTCCCTTTTATTCCCCTTTCTAGTGGTTGAAGGAAGGCATTCAATTAATAACACCATGGATTTTTTTAAATCTTTTTTGGGGAAACCTACATCACGGAAGTTATATATAAAATATATTTTTATGTATTTATTGATTGTTGCAGGGTTCTAGAAATCATGCAGAGGGATGCACAAAAAGGTCCAGCAACTTTTCCAGATGCATTGCGTACAAAAACATTAATAGATCAGGTTCTCAGCCTACTCGAGATCTCTAAACTTTAAGCTTTTACATTACAGAGCAAAATGGGTAAATATAATTTCTCTGATGCAATCACTAAATATTGCAACCAGAAAAAACTCTTATTTGGTAGATTAACTGGTGTTTATACTTGCATTTGATTGTTTGCTGATCCTTGTTGCTAAAACTCTTGTAGGTGGACAGGAAATTGGTGAAGCAGACAGTAATGACATCAGTTTATGGTGTCACCAATATCGGTGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAACATGCTGCCATACATAGGATTGCTACAGTAAGTAACAAAGGGTTGCTTGTACATATCTCCCCATTCTATGATTCAAATGAAATGTGAAAGTGGTGAAAAAGGGATCACCATTGCCATTTTACTTGATTCATCACAAGTTGTGCTACAAAATTGCACCTGTCTCTTTGTGACTTGACTCATTTCAGTCTCTGCAGCTCTGATTCTTACAAATTGTTGCAGTCTGCTTTAATGTATATGTAAATGTTTGTGCAGGTGCTATGTATTATAGACTGGCAATTTGCCCTCTGA

mRNA sequence

ATGTCTCTGGTTCTAGAAATCATGCAGAGGGATGCACAAAAAGGTCCAGCAACTTTTCCAGATGCATTGCGTACAAAAACATTAATAGATCAGGTGGACAGGAAATTGGTGAAGCAGACAGTAATGACATCAGTTTATGGTGTCACCAATATCGGTGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAACATGCTGCCATACATAGGATTGCTACAGTGCTATGTATTATAGACTGGCAATTTGCCCTCTGA

Coding sequence (CDS)

ATGTCTCTGGTTCTAGAAATCATGCAGAGGGATGCACAAAAAGGTCCAGCAACTTTTCCAGATGCATTGCGTACAAAAACATTAATAGATCAGGTGGACAGGAAATTGGTGAAGCAGACAGTAATGACATCAGTTTATGGTGTCACCAATATCGGTGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAACATGCTGCCATACATAGGATTGCTACAGTGCTATGTATTATAGACTGGCAATTTGCCCTCTGA

Protein sequence

MSLVLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKEHAAIHRIATVLCIIDWQFAL

Homology

[Close]

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot
Match: Q8L6J2 (DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPOT2-SYL PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-21
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDAQ+ PA FPDA+R + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 74  VLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 133

Query: 64  HAAI 68
             AI
Sbjct: 134 RGAI 137

[Close]

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot
Match: Q8L6J3 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-21
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDAQ+ PA FPDA+R + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 763 VLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 822

Query: 64  HAAI 68
             AI
Sbjct: 823 RGAI 826

[Close]

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot
Match: Q8VWF8 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-21
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDAQ+ PA FPDA+R + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 762 VLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 821

Query: 64  HAAI 68
             AI
Sbjct: 822 RGAI 825

[Close]

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot
Match: Q9LFV6 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPOT2 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.7e-19
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDA + P  FP+ALR + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 753 VLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 812

Query: 64  HA 66
            +
Sbjct: 813 RS 814

[Close]

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot
Match: Q93Y94 (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-18
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDA K PA  P+ +R + LI+QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 744 VLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 803

Query: 64  HAAI 68
              I
Sbjct: 804 RGVI 807

[Close]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL
Match: A0A6J1C0Y4 (DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.6e-21
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEIMQRDAQ+ PA FPDALR K LIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 771 VLEIMQRDAQRDPAIFPDALRAKRLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 830

Query: 64  HAAIHRIATVL 75
            A+I     V+
Sbjct: 831 RASISXXXXVM 841

[Close]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL
Match: A0A6J1JUF5 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEI+++DAQ+ P TFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 769 VLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 828

Query: 64  HAAI 68
            AAI
Sbjct: 829 RAAI 832

[Close]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL
Match: A0A6J1FHA8 (DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEI+++DAQ+ P TFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 769 VLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 828

Query: 64  HAAI 68
            AAI
Sbjct: 829 RAAI 832

[Close]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL
Match: A0A498HDD0 (DNA-directed RNA polymerase OS=Malus domestica OX=3750 GN=DVH24_028431 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.8e-20
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 4    VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
            VLEIM+RDAQK PA FP+ALR K L+DQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 1112 VLEIMRRDAQKDPAVFPEALRAKVLVDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 1171

Query: 64   HAAI 68
             +AI
Sbjct: 1172 RSAI 1175

[Close]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL
Match: A0A0A0KXM5 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.7e-20
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEI++RDAQK P TFPDAL  K LIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 731 VLEILKRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 790

Query: 64  HAAI 68
            AAI
Sbjct: 791 RAAI 794

[Close]

BLAST of Lcy09g003010 vs. NCBI nr
Match: XP_038890081.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEIM+RDAQK PATFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 770 VLEIMRRDAQKDPATFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 829

Query: 64  HAAI 68
            AAI
Sbjct: 830 RAAI 833

[Close]

BLAST of Lcy09g003010 vs. NCBI nr
Match: XP_038890080.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 4.7e-22
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEIM+RDAQK PATFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 770 VLEIMRRDAQKDPATFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 829

Query: 64  HAAI 68
            AAI
Sbjct: 830 RAAI 833

[Close]

BLAST of Lcy09g003010 vs. NCBI nr
Match: XP_022134053.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEIMQRDAQ+ PA FPDALR K LIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 771 VLEIMQRDAQRDPAIFPDALRAKRLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 830

Query: 64  HAAIHRIATVL 75
            A+I     V+
Sbjct: 831 RASISXXXXVM 841

[Close]

BLAST of Lcy09g003010 vs. NCBI nr
Match: KAG6578529.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEI+++DAQ+ P TFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 738 VLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 797

Query: 64  HAAI 68
            AAI
Sbjct: 798 RAAI 801

[Close]

BLAST of Lcy09g003010 vs. NCBI nr
Match: XP_022939617.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VLEI+++DAQ+ P TFPDALR KTLIDQVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 769 VLEIVRKDAQRDPETFPDALRAKTLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 828

Query: 64  HAAI 68
            AAI
Sbjct: 829 RAAI 832

[Close]

BLAST of Lcy09g003010 vs. TAIR 10
Match: AT5G15700.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-20
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDA + P  FP+ALR + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 753 VLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 812

Query: 64  HA 66
            +
Sbjct: 813 RS 814

[Close]

BLAST of Lcy09g003010 vs. TAIR 10
Match: AT5G15700.2 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.4 bits (233), Expect = 4.7e-20
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IM+RDA + P  FP+ALR + L++QVDRKLVKQTVMTSVYGVT IGARDQIKRRLKE
Sbjct: 753 VLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 812

Query: 64  HA 66
            +
Sbjct: 813 RS 814

[Close]

BLAST of Lcy09g003010 vs. TAIR 10
Match: AT1G68990.1 (male gametophyte defective 3 )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IMQ+DA++ P TFP+A   K ++DQVDRKLVKQTVMTSVYGVT  GARDQIK+RLKE
Sbjct: 718 VLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKE 777

[Close]

BLAST of Lcy09g003010 vs. TAIR 10
Match: AT1G68990.2 (male gametophyte defective 3 )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           VL+IMQ+DA++ P TFP+A   K ++DQVDRKLVKQTVMTSVYGVT  GARDQIK+RLKE
Sbjct: 725 VLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKE 784

[Close]

BLAST of Lcy09g003010 vs. TAIR 10
Match: AT2G24120.2 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 4.1e-16
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 4   VLEIMQRDAQKGPATFPDALRTKTLIDQVDRKLVKQTVMTSVYGVTNIGARDQIKRRLKE 63
           V EIM++D+ K P + P A   K LI QVDRKLVKQTVMTSVYGVT +GAR+QIKRRL+E
Sbjct: 735 VHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 794

Query: 64  HAAI 68
              I
Sbjct: 795 KGVI 798

The following BLAST results are available for this feature:

BLAST of Lcy09g003010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L6J2	4.2e-21	78.13	DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPOT2-...	[more]
Q8L6J3	4.2e-21	78.13	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum...	[more]
Q8VWF8	4.2e-21	78.13	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestr...	[more]
Q9LFV6	6.7e-19	74.19	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thalia...	[more]
Q93Y94	1.9e-18	73.44	DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=...	[more]

BLAST of Lcy09g003010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0Y4	9.6e-21	80.28	DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111006419 PE=3 ...	[more]
A0A6J1JUF5	1.3e-20	85.94	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489816 PE=3 SV=...	[more]
A0A6J1FHA8	1.3e-20	85.94	DNA-directed RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111445458 PE=3 S...	[more]
A0A498HDD0	2.8e-20	84.38	DNA-directed RNA polymerase OS=Malus domestica OX=3750 GN=DVH24_028431 PE=3 SV=1	[more]
A0A0A0KXM5	3.7e-20	85.94	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G642180 PE=3 SV=1	[more]

BLAST of Lcy09g003010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890081.1	4.7e-22	92.19	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Beni...	[more]
XP_038890080.1	4.7e-22	92.19	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X1 [Beni...	[more]
XP_022134053.1	2.0e-20	80.28	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica chara...	[more]
KAG6578529.1	2.6e-20	85.94	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita a...	[more]
XP_022939617.1	2.6e-20	85.94	DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita mosch...	[more]

BLAST of Lcy09g003010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15700.1	4.7e-20	74.19	DNA/RNA polymerases superfamily protein	[more]
AT5G15700.2	4.7e-20	74.19	DNA/RNA polymerases superfamily protein	[more]
AT1G68990.1	1.2e-18	73.33	male gametophyte defective 3	[more]
AT1G68990.2	1.2e-18	73.33	male gametophyte defective 3	[more]
AT2G24120.2	4.1e-16	65.63	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002092	DNA-directed RNA polymerase, phage-type	PFAM	PF00940	RNA_pol	coord: 4..65 e-value: 4.6E-15 score: 55.4
IPR002092	DNA-directed RNA polymerase, phage-type	PANTHER	PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 4..68
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00489	RNA_POL_PHAGE_2	coord: 32..46
None	No IPR available	GENE3D	1.10.150.20		coord: 1..74 e-value: 1.9E-14 score: 55.8
None	No IPR available	PANTHER	PTHR10102:SF11	DNA-DIRECTED RNA POLYMERASE	coord: 4..68
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g003010.1	Lcy09g003010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006390	mitochondrial transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0034245	mitochondrial DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity