Lcy08g016740 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g016740
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr08: 47405804 .. 47406713 (+)
RNA-Seq ExpressionLcy08g016740
SyntenyLcy08g016740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTTCATTTCGGAAGGCTTATCTCTACCTCTTACAAATACCCGAAACATGAAATCTTATGGAATATTTGGTTGGATCGGTATGGAACGATCAGGTGTATTTAACGAACAATCTTGTTCTCTGGAGCAACTTTGGAAGGATGTTATAATCATTTGCCTCATCACGGTCTTCAAAACCCTCTTTTTTTATGACCACGATGCTTCTTGCATAGCTCTAAATTGGAGTACTTTTCATGGAGCAATTTATTGTTTTTGTTTCTCACATAGGCTTTTTTATGAAATATCTCTGTCCAAAAGGAAAAAAAAGTGTTAACCATGCTACAGGTTTCGAGATTGAGATCGTATTCTATACAATTGAGTGACAGGTTAGTTTTAGCCTTTTAATTTCTTCGCAATGAACTCTAAATTTGAACGAGGGATAATACAGGGGGAATAGGCTGGATCATCCGAAACTGGCAAGGCATCCCAGTGAGAGCAGGGTATCGACTCATTCAGCAGAAGTGGCCGGTTGTTTGGTTGGAAGCCATCGCTGTCTTGGACGGTATCCGGTCGATCCCTCGAGAGTCCCCCAAGCTCTTTATCGAGCTTGACTCTATTCAGGTGGTTAAGTTGCTTGGGGGAAGGAGAGGGATTTGACTGATCTTTCTAAGTTCATTGAAGAAGCTCATTTTCTTCTTCAGGCACATCATATCCAATCAATCACCCACGTATCTAGGCTTCAGAATCAGATGGCCCATCAATTGGCCCGTCGGGCTTGGTCCACAAACACTTCAGATAGTTGGAGCAGCCATTTTCCTTCATGGTTTTTAAATTTGAATAAGTTGGATACTGAGGTTTTGTATAACAGCATTGGGGGTATCTGTCCCACGGTTGGCAGCCATATGGGAGCAATTGCTCTTTCTTAA

mRNA sequence

ATGGATGATTTCATTTCGGAAGGCTTATCTCTACCTCTTACAAATACCCGAAACATGAAATCTTATGGAATATTTGGTTGGATCGGGGGAATAGGCTGGATCATCCGAAACTGGCAAGGCATCCCAGTGAGAGCAGGGTATCGACTCATTCAGCAGAAGTGGCCGGTTGTTTGGTTGGAAGCCATCGCTGTCTTGGACGGTATCCGGTCGATCCCTCGAGAGTCCCCCAAGCTCTTTATCGAGCTTGACTCTATTCAGGCACATCATATCCAATCAATCACCCACGTATCTAGGCTTCAGAATCAGATGGCCCATCAATTGGCCCGTCGGGCTTGGTCCACAAACACTTCAGATAGTTGGAGCAGCCATTTTCCTTCATGGTTTTTAAATTTGAATAAGTTGGATACTGAGGTTTTGTATAACAGCATTGGGGGTATCTGTCCCACGGTTGGCAGCCATATGGGAGCAATTGCTCTTTCTTAA

Coding sequence (CDS)

ATGGATGATTTCATTTCGGAAGGCTTATCTCTACCTCTTACAAATACCCGAAACATGAAATCTTATGGAATATTTGGTTGGATCGGGGGAATAGGCTGGATCATCCGAAACTGGCAAGGCATCCCAGTGAGAGCAGGGTATCGACTCATTCAGCAGAAGTGGCCGGTTGTTTGGTTGGAAGCCATCGCTGTCTTGGACGGTATCCGGTCGATCCCTCGAGAGTCCCCCAAGCTCTTTATCGAGCTTGACTCTATTCAGGCACATCATATCCAATCAATCACCCACGTATCTAGGCTTCAGAATCAGATGGCCCATCAATTGGCCCGTCGGGCTTGGTCCACAAACACTTCAGATAGTTGGAGCAGCCATTTTCCTTCATGGTTTTTAAATTTGAATAAGTTGGATACTGAGGTTTTGTATAACAGCATTGGGGGTATCTGTCCCACGGTTGGCAGCCATATGGGAGCAATTGCTCTTTCTTAA

Protein sequence

MDDFISEGLSLPLTNTRNMKSYGIFGWIGGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPKLFIELDSIQAHHIQSITHVSRLQNQMAHQLARRAWSTNTSDSWSSHFPSWFLNLNKLDTEVLYNSIGGICPTVGSHMGAIALS
Homology
BLAST of Lcy08g016740 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPK-LFIELDSIQA 88
           GGIGWI+R+ +G  ++A  R+I+ +  + +LE +A+ +G+R+I +E  + + +E DS++A
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 89  HH---------------------------IQSITHVSRLQNQMAHQLARRA 112
            H                           I S+ H+SR  N++AH LARRA
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Lcy08g016740 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-05
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPK---------LF 88
           GGIGWI+R+ +G  ++A  R+I+ +  + +LE +A+ +G+R+I +E  +         + 
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 89  IELDSIQAHH---------------------------IQSITHVSRLQNQMAHQLARRA 112
           +E DS++A H                           I S+ H+SR  N++AH LARRA
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

BLAST of Lcy08g016740 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-05
Identity = 44/134 (32.84%), Postives = 56/134 (41.79%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRES--PKLFIELDSIQ 88
           GGIGWIIR+W G  V AG R ++    V  LEA A+L+G+R++        L IE DS +
Sbjct: 94  GGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAE 153

Query: 89  AH---------------------------HIQSITHVSRLQNQMAHQLARRAWSTNTSDS 134
                                         I +   V R  N  AH LA+RA     S  
Sbjct: 154 VESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMI 213

BLAST of Lcy08g016740 vs. ExPASy TrEMBL
Match: A0A7J6I8Y3 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_014459 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 34/134 (25.37%), Postives = 60/134 (44.78%), Query Frame = 0

Query: 30  GIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPKLF---------- 89
           G+G+I RNW G  + AG   +     VV  EA A++  +++ P    + F          
Sbjct: 63  GLGFIWRNWSGNIISAGMIFLPNICSVVLAEAKAIVAALKACPIGGSRFFEIRCDCKVLV 122

Query: 90  --------------IELDSIQAHHI----QSITHVSRLQNQMAHQLARRAWSTNTSDSWS 136
                         + ++ I+ H +      +T V R  N++AH+LA+R+   N + S+ 
Sbjct: 123 DGFKEKGSQLSDVSLVINKIKRHQLFPFCTKLTLVKRNNNEIAHRLAKRSLENNLTQSFY 182

BLAST of Lcy08g016740 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-05
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPK-LFIELDSIQA 88
           GGIGWI+R+ +G  ++A  R+I+ +  + +LE +A+ +G+R+I +E  + + +E DS++A
Sbjct: 102 GGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEA 161

Query: 89  HH---------------------------IQSITHVSRLQNQMAHQLARRA 112
            H                           I S+ H+SR  N++AH LARRA
Sbjct: 162 IHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Lcy08g016740 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 44/134 (32.84%), Postives = 56/134 (41.79%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRES--PKLFIELDSIQ 88
           GGIGWIIR+W G  V AG R ++    V  LEA A+L+G+R++        L IE DS +
Sbjct: 94  GGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAE 153

Query: 89  AH---------------------------HIQSITHVSRLQNQMAHQLARRAWSTNTSDS 134
                                         I +   V R  N  AH LA+RA     S  
Sbjct: 154 VESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMI 213

BLAST of Lcy08g016740 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 36/119 (30.25%), Postives = 61/119 (51.26%), Query Frame = 0

Query: 29  GGIGWIIRNWQGIPVRAGYRLIQQKWPVVWLEAIAVLDGIRSIPRESPK---------LF 88
           GGIGWI+R+ +G  ++A  R+I+ +  + +LE +A+ +G+R+I +E  +         + 
Sbjct: 102 GGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIH 161

Query: 89  IELDSIQAHH---------------------------IQSITHVSRLQNQMAHQLARRA 112
           +E DS++A H                           I S+ H+SR  N++AH LARRA
Sbjct: 162 LESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CP261.3e-0532.43uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV18.4e-0530.25uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DNV98.4e-0532.84uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A7J6I8Y37.1e-0425.37RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_014459 PE=... [more]
Match NameE-valueIdentityDescription
XP_022143535.12.7e-0532.43uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022155262.11.7e-0432.84uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022156777.11.7e-0430.25uncharacterized protein LOC111023608 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 28..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g016740.1Lcy08g016740.1mRNA