Lcy08g014930 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g014930
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionC2 domain-containing protein
LocationChr08: 45058794 .. 45059165 (-)
RNA-Seq ExpressionLcy08g014930
SyntenyLcy08g014930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCCAAGGAGTTCCAAGTTTCGTCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGCCGGAGCCTCGCCGGCCGGCCACCGAGAAACGCCGGTGGCGAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTCGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTACACTTCATAG

mRNA sequence

ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCCAAGGAGTTCCAAGTTTCGTCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGCCGGAGCCTCGCCGGCCGGCCACCGAGAAACGCCGGTGGCGAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTCGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTACACTTCATAG

Coding sequence (CDS)

ATGGCGATGGCGACGGATTACAGAGTATTCGATCTAAACGTTACGTGCGCCGAAGGAATCCAAGGAGTTCCAAGTTTCGTCGATTTTTTCCACAAATGGAAGGTCTACGCGGTGGTTTCCGTCGCCGGAGCCTCGCCGGCCGGCCACCGAGAAACGCCGGTGGCGAAGTACTTCGGTCGAAATCCGGTGTGGAATTTTCCGATGAGGTTTTATTTCGAGGAATCGGAGCTGCGAGAAAATGCCCTAACAGCTCTGAGGATTCAGCTGAAACGAAAGCGAAGTTTTGGAGAAGATGAAGACATTGCCGAAGCTTTAGTTCCGTTGAAGAATCTTTTTCATGGCAATGAGAATGTGACAAATTACACTTCATAG

Protein sequence

MAMATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWNFPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENVTNYTS
Homology
BLAST of Lcy08g014930 vs. ExPASy Swiss-Prot
Match: O04133 (Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAG--ASPAGHRETPVAKYFGR 62
           M  +YR  +LN+  A+ I+     V+ F K  VYA VS++G    P G   T V K  G 
Sbjct: 1   MTMEYRTLELNIISAKDIKN----VNLFSKMDVYAAVSLSGDPLHPQG-ATTHVHKDAGS 60

Query: 63  NPVWNFPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNL 112
           NP WN+P++F   ES  +EN L +L I+L   R+ G D  I    VPL+ L
Sbjct: 61  NPTWNYPVKFSVNESLAKENRL-SLEIKLISDRTLG-DTVIGTVHVPLREL 104

BLAST of Lcy08g014930 vs. ExPASy TrEMBL
Match: A0A6J1FDP3 (protein SRC2 OS=Cucurbita moschata OX=3662 GN=LOC111444443 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWN 65
           DYR F +NVTC EGI+GV SFV+FFHK KVYA VS+ G   A ++ETP+AKYFG NPVWN
Sbjct: 2   DYRAFKVNVTCVEGIEGVLSFVNFFHKSKVYAAVSITGDLLA-NQETPLAKYFGENPVWN 61

Query: 66  FPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENV--TNYTS 124
           +PM+FY +ES+L+ENALT LRIQL+RKR FG DE IAEALVPLKNLF GN+NV   NY S
Sbjct: 62  WPMKFYLKESKLQENALT-LRIQLRRKRIFGGDEYIAEALVPLKNLFDGNKNVMDENYCS 119

BLAST of Lcy08g014930 vs. ExPASy TrEMBL
Match: A0A0A0LIU2 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G030590 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 81/119 (68.07%), Postives = 100/119 (84.03%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNP 62
           M  DYRV DLN+T AEGI+GV SF +FF K KVYA VSV G +P+  +ETP+AKYFG+NP
Sbjct: 1   MLIDYRVLDLNITSAEGIKGVLSFTNFFFKSKVYAAVSVDG-TPSATQETPLAKYFGKNP 60

Query: 63  VWNFPMRFYFEESELRENALTALRIQLKRKRSFG-EDEDIAEALVPLKNLFHGNENVTN 121
           VWN  MRF+ EES+L+ENALT L+I+LKR+R+FG +DEDIAEA +PL+NLF+GNENVTN
Sbjct: 61  VWNCSMRFHLEESKLQENALT-LKIKLKRRRTFGRDDEDIAEASIPLRNLFNGNENVTN 117

BLAST of Lcy08g014930 vs. ExPASy TrEMBL
Match: A0A6J1DB07 (protein SRC2 OS=Momordica charantia OX=3673 GN=LOC111018814 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.2e-31
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNP 62
           M+TD+R F++N+TCAEG +GV SFV+FF K KVYA VSV G  PA  + TP+A YFG NP
Sbjct: 1   MSTDFREFNINITCAEGQKGVLSFVNFFQKTKVYAAVSVVGGEPA-VQFTPLANYFGDNP 60

Query: 63  VWNFPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENVTNY 122
           VWNFPMRF  EESEL+++ALT LRI+L+RKR FG DE IAEA V L NL + N++  N+
Sbjct: 61  VWNFPMRFCLEESELQQDALT-LRIELRRKRIFGGDEAIAEAFVRLGNLLNCNDSNLNF 117

BLAST of Lcy08g014930 vs. ExPASy TrEMBL
Match: A0A5A7TWY8 (Protein SRC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00900 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 57/87 (65.52%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 35  VYAVVSVAGASPAGHRETPVAKYFGRNPVWNFPMRFYFEESELRENALTALRIQLKRKRS 94
           VYA V V G  P+  +ETP+ K+FG NPVWNFPMRFY EES+L+ENALT L+I+LKRKR+
Sbjct: 277 VYAAVYVDGI-PSATQETPLEKHFGENPVWNFPMRFYLEESKLQENALT-LKIKLKRKRT 336

Query: 95  F-GEDEDIAEALVPLKNLFHGNENVTN 121
           F G  EDI EA + L+NLF+GN+NVTN
Sbjct: 337 FRGYGEDIGEASILLRNLFNGNQNVTN 361

BLAST of Lcy08g014930 vs. ExPASy TrEMBL
Match: A0A6P3ZA45 (protein SRC2 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107411858 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-16
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWN 65
           +YR  D+NVTC EG Q V +   FF + K+YA VS+ G+S    ++TPV K+ G    W+
Sbjct: 2   EYRSLDINVTCLEGFQ-VKNL--FFKRPKIYATVSIVGSSRT-TQKTPVGKFAGSFQRWD 61

Query: 66  FPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNEN 118
           +PMRFY EES L+EN L  L I+L+  R+   D+D+ E  VP+K LF  N++
Sbjct: 62  YPMRFYIEESMLQENCL-MLMIRLRSSRTLCRDKDVGEVYVPIKQLFLHNDH 108

BLAST of Lcy08g014930 vs. NCBI nr
Match: XP_022938307.1 (protein SRC2 [Cucurbita moschata] >KAG7021095.1 Protein SRC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWN 65
           DYR F +NVTC EGI+GV SFV+FFHK KVYA VS+ G   A ++ETP+AKYFG NPVWN
Sbjct: 2   DYRAFKVNVTCVEGIEGVLSFVNFFHKSKVYAAVSITGDLLA-NQETPLAKYFGENPVWN 61

Query: 66  FPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENV--TNYTS 124
           +PM+FY +ES+L+ENALT LRIQL+RKR FG DE IAEALVPLKNLF GN+NV   NY S
Sbjct: 62  WPMKFYLKESKLQENALT-LRIQLRRKRIFGGDEYIAEALVPLKNLFDGNKNVMDENYCS 119

BLAST of Lcy08g014930 vs. NCBI nr
Match: KAG6586252.1 (Protein SRC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-36
Identity = 84/120 (70.00%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 6   DYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWN 65
           DYR F +NVTC EGI+GV SFV+FFHK KVYA VS+ G   A ++ETP+AKYFG NPVWN
Sbjct: 2   DYRAFKVNVTCVEGIEGVLSFVNFFHKSKVYAAVSITGDLLA-NQETPLAKYFGENPVWN 61

Query: 66  FPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENV--TNYTS 124
           +PM+FY +ES+L+ENALT LRIQL+RKR FG DE IAEALVPLKNLF GN+NV   NY S
Sbjct: 62  WPMKFYLKESKLQENALT-LRIQLRRKRIFGGDEYIAEALVPLKNLFDGNKNVMDENYCS 119

BLAST of Lcy08g014930 vs. NCBI nr
Match: XP_031736682.1 (protein SRC2 homolog [Cucumis sativus] >KGN60949.1 hypothetical protein Csa_021167 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 81/119 (68.07%), Postives = 100/119 (84.03%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNP 62
           M  DYRV DLN+T AEGI+GV SF +FF K KVYA VSV G +P+  +ETP+AKYFG+NP
Sbjct: 1   MLIDYRVLDLNITSAEGIKGVLSFTNFFFKSKVYAAVSVDG-TPSATQETPLAKYFGKNP 60

Query: 63  VWNFPMRFYFEESELRENALTALRIQLKRKRSFG-EDEDIAEALVPLKNLFHGNENVTN 121
           VWN  MRF+ EES+L+ENALT L+I+LKR+R+FG +DEDIAEA +PL+NLF+GNENVTN
Sbjct: 61  VWNCSMRFHLEESKLQENALT-LKIKLKRRRTFGRDDEDIAEASIPLRNLFNGNENVTN 117

BLAST of Lcy08g014930 vs. NCBI nr
Match: XP_022150754.1 (protein SRC2 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 3   MATDYRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNP 62
           M+TD+R F++N+TCAEG +GV SFV+FF K KVYA VSV G  PA  + TP+A YFG NP
Sbjct: 1   MSTDFREFNINITCAEGQKGVLSFVNFFQKTKVYAAVSVVGGEPA-VQFTPLANYFGDNP 60

Query: 63  VWNFPMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVPLKNLFHGNENVTNY 122
           VWNFPMRF  EESEL+++ALT LRI+L+RKR FG DE IAEA V L NL + N++  N+
Sbjct: 61  VWNFPMRFCLEESELQQDALT-LRIELRRKRIFGGDEAIAEAFVRLGNLLNCNDSNLNF 117

BLAST of Lcy08g014930 vs. NCBI nr
Match: KAA0048022.1 (protein SRC2-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-20
Identity = 57/87 (65.52%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 35  VYAVVSVAGASPAGHRETPVAKYFGRNPVWNFPMRFYFEESELRENALTALRIQLKRKRS 94
           VYA V V G  P+  +ETP+ K+FG NPVWNFPMRFY EES+L+ENALT L+I+LKRKR+
Sbjct: 277 VYAAVYVDGI-PSATQETPLEKHFGENPVWNFPMRFYLEESKLQENALT-LKIKLKRKRT 336

Query: 95  F-GEDEDIAEALVPLKNLFHGNENVTN 121
           F G  EDI EA + L+NLF+GN+NVTN
Sbjct: 337 FRGYGEDIGEASILLRNLFNGNQNVTN 361

BLAST of Lcy08g014930 vs. TAIR 10
Match: AT3G05440.1 (C2 domain-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 29/101 (28.71%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 7   YRVFDLNVTCAEGIQGVPSFVDFFHKWKVYAVVSVAGASPAGHRETPVAKYFGRNPVWNF 66
           Y+  ++NV  A+ +      ++   +  VY  VSV   S    + TP A +  +   WN+
Sbjct: 4   YQPVEINVLSAQDLNS----INLLFRPTVYVSVSVTRGS-RDKQVTPAAAWDKKFLRWNY 63

Query: 67  PMRFYFEESELRENALTALRIQLKRKRSFGEDEDIAEALVP 108
            M+FY E+ ++R N  +    Q+K KR FG D+ + +  +P
Sbjct: 64  RMKFYIEDDKVRRNE-SVFVFQIKCKRFFGSDQVVGKLFIP 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O041331.1e-0939.64Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FDP31.1e-3670.00protein SRC2 OS=Cucurbita moschata OX=3662 GN=LOC111444443 PE=4 SV=1[more]
A0A0A0LIU27.1e-3668.07C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G030590 PE=4 SV=... [more]
A0A6J1DB075.2e-3162.18protein SRC2 OS=Momordica charantia OX=3673 GN=LOC111018814 PE=4 SV=1[more]
A0A5A7TWY81.9e-2065.52Protein SRC2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00... [more]
A0A6P3ZA456.2e-1645.54protein SRC2 homolog OS=Ziziphus jujuba OX=326968 GN=LOC107411858 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022938307.12.2e-3670.00protein SRC2 [Cucurbita moschata] >KAG7021095.1 Protein SRC2, partial [Cucurbita... [more]
KAG6586252.12.2e-3670.00Protein SRC2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031736682.11.5e-3568.07protein SRC2 homolog [Cucumis sativus] >KGN60949.1 hypothetical protein Csa_0211... [more]
XP_022150754.11.1e-3062.18protein SRC2 [Momordica charantia][more]
KAA0048022.13.9e-2065.52protein SRC2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G05440.12.0e-0628.71C2 domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 10..120
e-value: 2.7E-6
score: 27.6
IPR000008C2 domainPROSITEPS50004C2coord: 1..121
score: 11.259693
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 8..123
e-value: 8.8E-10
score: 40.5
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 12..117
NoneNo IPR availablePANTHERPTHR32246INGRESSION PROTEIN FIC1coord: 8..116
NoneNo IPR availablePANTHERPTHR32246:SF101OS01G0934100 PROTEINcoord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g014930.1Lcy08g014930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response