Lcy08g009100 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g009100
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S13
LocationChr08: 20262739 .. 20274179 (+)
RNA-Seq ExpressionLcy08g009100
SyntenyLcy08g009100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGGTTTATTTCTCCAAGTTTCTCCTTGATTTTGAATCCTTTGCTCTTTAGCCTCCTAATCAATTTTTTTTTGTCTTCTAATTTTTAATGCCCAAGCAACGTGGTTTTCAAGCTAATAGGACCAAATTTAGAATGTAAACTACATTTCTCATTTTTCTGTTGTTGGAGTGTGTAATAGCTTTCATTCAAATTTGTCGAGTTTTTATGTTGGTTCTGGATTGTCATGGGTTTTATGATTATAGGTTTCAAGTTTTGTATTATGGATGACTTTTTATATCCTCAAATAATTTGAACTTTAATTTTGATCATTTGCTATTGTGAAGAAGTTTGCCGCCTAGCCTTAAAAAGACGTTATCGTCTATTATCTTATTATGCACTTTTTCCTATATGGTTCATACAACTGGTGTGTCGTCCCTATTGAAACTACTTTTTTTTTCTTTTTTCATGTGTATTCACTTGTCTAACCTTGATATGTTCTCTCTATGGTCCTAATTTTCTTGGTGGTTGTAAACTTTTTGACATTGTTTTTAACACTTCGCAGATCCAAAAGAGGACTTGAGGAAAATTGAATTTTTTTTTATGCTGGATTAGTTTTTTTTTTTTTTTTTTTTTTGGTATTTTGAGTGTAGGGATTGATGTTTAGAGATTGATTTGAGTAGGGGTGAGGAATTGTTTTGAATGTTGGGAGTGGGTTGTTGCTTAGAGATTGTTCATAAGTTTATCTGTATTTAAGATAAGTTAGTTTAAGTTTTGTTGCTATGAACTTAGTTATTTGTTTTGATGTTAAGTTTGTTTGTTTAGTTCAATCTATTATGTATTGTAACTTTATTTTCTAGAAATTACTTATACATTTAAATTGACATTTGTTTCAATTATTCACTTGCAAAACTTGTTTGTTGTTAATTTGTTCTATTAGAGAGAAATTGAATGCAGTTGATATTCAAACTGTAGCAGAGTTGACTAGCTTTATGAAAATGCTTAAATGAATCATGCAATCACAAGAAGGAATGACTAAATAGGTATGAACTCTATACTTTGGTAAAATATAATGGTAGTAAACTGTTTTGAGATTTGTTGTATGGCTATCCTGCAGTTATGGTAGCCAATGATTTGCATATAGGGTAGTGGGCTAGTGCTTCAAGATTGATTTGAGTACATGGTGGAGTTAAGACATGCTTATATTTATGTTCTTATGTTTAGATAAGTGTAATTACAAGTTTTGAGTTTATTTGGTTCGTTTGGTACATTTATGTTCATGGTAGTTGAGTTTTGAAAAGCTTAGATGCTACGTTCATAAGCTTTGAAACGTTTTGGGTAAATTTAGGTTTTATGTTTTGTAACTTTGGTAACTTAGATAAGTTTTTGTGTTACGTTTATTTATGTTTATGATAGTTCGTTGATGTTATGTTCATTATTTTTGAAAGGTTTGAAATTTTTGGTTGTTTTAGAGGGATTGAGAGTTCAAGGGAGGAGATTTGGAAGTCGATTAGATTTAACAATTCCTTATGGGCGTCGGTTTGTCGGCCTTTTTTGTAATTTTTAGTGGGGGTTGATGTTTAGAGATTGATTTGAGGAGGGGTGAGAAATTGCTTTGAATATAGGGGGTGAGTTGTTGCTTAGAGATCAATTTTTTCATGAGTTTAAGTTTACTTAAGTTTAGTTAATTTGGTGGATGTTTAGCTTAGTTTGTATCGATAAATTAGTTTGATTTACCTATTTAGTTATTATGTTTTAAGAATTTGGTAACTCAGTTAAGTTTTGATGTTATGTTCATTACTTTTAAAAACTTATTTCAATTTGTTTTAAGGGTTAGTTTGATGAGTTTGTGGAGGGTGGGAGATTGTTTTGAGTGTGATAGAGGAGTGATAGATTGTTTTGATTGAAGGGGGTGAGTGAGTGCTAAGGATCATTTTGAGCATGTCTTAGGTTCTTAGTCTGTGATCGTGAAGAGTTCTTGTAAAAGATTGCTCATGTGATTGGCTAACAATGGAAATTGCAGTCGTTGATTTTAGTGAAGCATAGTGACATGTTTTTTAGTGTCATCTGAGTGCCAGTTCTGATGGTCAAATGTCTAAGAAAATCGCAAGTTCTTCCATTGTTTGTCATTTTATCTGCTAGTCTTTCTAATGGAAGGGAAGTGAATCTTTGTACTCGCTATAGAAATTGATGGCTTTCCTTTGACCATTCAAGTTGCCGAGAACTTTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATAGGTGTTACTGTCTATGATTCTCACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGTGAGTCCCATCTACCCTTCCTCCACTGAACTTCTATTTTATACATCAGCCAGAATTATTATGTTATTCTTTTTAACATGTTTTTTTTTTTGGCTCAGGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACGTAATAAGTATTTTAAGGCACAAAAGCACGTGAATTATTTAATAGATAGTTTGTGATTTTGAATATATTGTAGAGATAGGTATTATGTAATTTTGAATATATGGTGGAAATGGGTGTAAAGTTCTTCAATTTGGAATTGTCCAAATGGAGTTGATAGGTCTTGTAATTTTGTAATTGTTCATGTGGGTTGATAGGTCTTGTAATTTTTGGAATTGTTCATATGGGTTGATAGTTGTAATTTTGGAATTGCTCATATGGAGGTTAGATACTTTTGTAATGTTGAAGATAATAAATTTTATTGAAGTTATTGGGGGAAATTTGGTTGATGGATCTTGAATGTGTATTTGTTTATTTGGTTGATCAATATATCAAATTGTTCGAATGCAATGCAGGAGATTCAAGATATAGGGAACAACTATTATTATTGAGGAAAAAAAAATCACAAACAAACCTAACATATAAAATGTGTCAAAAACTTATTGAATTGATATTTTTGAATTGTCAAGATACAGTACAATGTGACACGTTAGACCTGTCAAGTTTTAACAAAAATGATATTTAATAAATGTCAAGAAATCTATATACACGACGCTTCTGAAATGTCAATGCTGTTAATATTCTTGACGTTTAAAAAATATCAAGGAAAGAATATCTTAACGCTTCTCGTTTGTCACATTTTCGATACCTTATTCTTGACAGTGGTTCTCTCGACGCTTTTAAAAGCATCAAGAGTATGAAAATTTGACATTCCAAAAGCGTAAAGTAATACCATTTTTGTAGTAGTGAACGAACGTTAAATATTTGTGCTTTTAAGAGCTAGCCTAGTGAACAACATTCACTGTGTCCCTTTATTTTCAGTATTTTATTTTTGCTAGTTTAAGTTTCTTTTAGATAGGTTGTTGCTCATTTTATTTAGTTGTTTTTGTTCCTTTTAGGATGACAGCGCTAAAACGAGCTTGTATTTACATGACAATCAATGCCTTTCCACCCATGAGCTTAGATTCCGGGAAGTTCCTTTTTCTCCACTATATTACATTTGTCCTACATATTTACATGTCTATTACATTGAGGACAATGTAAGCTTTTAGGTTGAGGGTGGTGTATTCTGTTTTCCATTGGGCCTTGAGCATCTATGCCTTGGGCCAGTGTTTGCACTTTATGACTGCCTTGCAGGCTAGTTGTATCTTTTTCTGTTTATGTGATAATGATTTTCTAGGAAAAGCTCATTTTTCAAAAATTTTAAGCTTTCGACGAGTTGTAATCATGAGTGACCCAAAAGGGAGCCTTTTTAAAATCTTTATTTGTTATATCTTGCATTGGTAGGGTGTCTTTCTTGCTTTAGAGTAGGATTCGAACGCTTAGGAGCGAATTATTAGGTTCATACTCCTATTGTCACCCCAATAGGTGTAAGGTTAAGCTAGAAAGCCTAAATTTTTGCAAATTAGTGTGTGGAGTCTTGCATAGGAGATAAAAAAGAAAATTCACCTGCCATGAAAGAAAAGAGAGGTAAAATGAGTTGAGTGAGCTTGTGTGTAAATGATTTTTTGTAGTTCATCTTACCTTGTTTTATCCTTTACGAACAAGCATGCTTTGCATTGGTCATGAGTGTAAATGGGTAAAAAGAAGCTACATGCAGTGTGCTTAGTTAGGCTAACCAAGGGTTAAACTCGAGTTATGGGTCCCTGCATCGTAGTGTGAAAGCTAGTGTCCCGCCGTTAAAAAATGCAAAAAGAGAGAAAAATGAATTCCTTGTTTACTTTTTCAGGCACCTAAGTCATGATTAAGCAACCTACTTTGTAGCTGGAAGATAGGATAAGAGTTTAATAAGTCAATCCCGGGTCTATAGGGTCCTCTGTAGGTGGGGATAGAACTCTCTTGTGCAAGATTATCACTGAAAACTTTTGATTTGTCTCCCCATTGGGTCTTGTGTTTATGTCTCTTGATTGCTTTAGTTATTGGCTTATGAGCTTAGAGGAATGAAATGCATTACCACAATAGTATACAACTTATTCTTTGGTTTGTTTACCTTGGTCGAGGACTAGCATGATTTATGTTGGGGGTATTTGATAGCACCTAATTCGTGTTATCTTATTACCGCTGATCTAGACTTGTTAGAATGTACTTTACGGCTTATTTGTATACTTTATAGATAATTCGAGCATTGGAGACATCAGGAGCGAATCACACAATCTGGTACTAAATCGAGCATTCTAGAGCGTTTTTTAGCCAACTCGGAGTTCACAAATGAAGAAGAGGTGAAAAGACACGAGCAGACCGTGAAGAGCCTAAAGATTAGTGCCAAGGAGTAAAAGGTTTGAGTCCCAAGGCAAGCAATTTGGAAGAAAACCGAAGAAAATAAGACAACATGATAGAAGCAGGCCTAGCATCGGACACTACCCTTAGTGTCTCGACATTGATTCGATTTTATGCGGAAGACAAAATGCGTAGCATCAAGACGCTACCTTCCTAGCGTCTCGACGCTATGACTGTAGTTTAAATACGTATTTATGATTTTTAGCGTTGTAGGCTAGAATTTCCAATTCCTTTTGCGATTCCTGTTGTTTTTCTCTTGTTCTTCTTGTATTTCTTTAATTCATAGACACCTTAGGATGATTTTCTTTTGTGATTTCATTATTTTTACTTCAATCATGTTACCACTCCTTATTCGTTGGATTGTGGGATGTAATTGATTTGGTTTACGAATTCTTGGTTGAGTTGCTGGTTTTTTAATGGAATTTTATTGCATTGTTGTGTTCATCTACGATTTCACACTTTAACCACTGTCTTCGAATGCCTTCTTAGATAGTTGATAACTCTCCAAAAGGGAGTTATCTATTCTATGATGATTTATATGTTATTTGTGCCAAATCGGTGTGTTATTAGTTGAATATAATTCGTTTTATCATAATTATAAGAATTGATGCTTTGGAAGTTCTTTTGCAGAGAAATTAATGCTGAGTGACTTGAGGGAGCAAAATCCATGATCCAGCAAAGCTGTGAGCAAAACTGGTCACGTGAGCTGCACGTGATTCATTAATGAGGTGGCGTTTCCAGCAGTGATCTCGGATTTAAGAAGCTTGGAGAGAGTTCCACGTGTAATATTTGACGTAATTAGGCTTGACTTCACTCTATAAAAGGAAGTAGCCGTCTCAAGTCAAAGACATTCCAAATAATTCCAAAGAATTCCAAATATTTCCGTCTTTGGAGGCCAAATAGAGGAGAAAACGATTGGAGACCTTAGAAGATCATTTTCTACAGATTTCCTCAAGGAGGATCATTCTTTCGTGTAGAGTTTGTAGATATGGATGTGCTTAATCAGATGGTATCGTGTGTTGTTTTCATTTCTATGAACTAATTTACTTTAGGCATTGGTTGAGAATAATGTAATTGTCAATTCTTTATAATCTAGCTATTCTTATTGTTCTTTGAGTATCTTGATTACTTGTTGATCTTAATTTCATTTTGTGTCCGCCTGGCCAGCCGGTATGAATAACTTCTCTTAGTTTTAGGGATGATTTAAGGGTTGTGTGGCTTGTAATCACATTAGTGAAGGTGTTCATATAACACATGCGGAAGCAATTGAAGATCGAAAGCACTTAACTCATTCAATTTTACTCCTAAAGCATGTTGGTTCTAGAAAAGACAGAACAGAGAGTTTAGAGAACACCAACCTTTGTAGCTCACTAATGAGGAACTCCTTGTGGTGTTTTCTTCTCCTATGCTCCTTGGACAACCTCTAGAGTCTTCCCTACTATTCTCCGGGCCAAGAACGACTTGTGGGAGTCTATAATGATAGGGAAATGGAAGGGAATGCTTGAAGGTTCAAGCTTTATGGAGATATGAGATGAGAGAGTGAATGAGGAAGAAATTCTGCAGCATAACACTAAGATGAATGCTATCCCCTTGCACAATCTGATTCTTCCTCTACTTATAGAGAGAATCCATGCAAGAAAGGGCTTCAAAATGCAAGACACATGGTGGTCTTGATGGTGAAAGTGGAAGCTAGGTGTTCAAGCAACAATACATGCACCTTTGCATGAATGTGGTGTAATTCCACTTTGAGTCTTCATGCATGAGTGCATTTCCAACTTTTTCCACTAACAAATGATTCAAAATCAGATTATTAATTGTGCATTTCTTGTTTTAATTTCAATTCTAAATTGAAATCAACAATGACAATTAATCTTGAAGCTTACCCCACTAATTATGAATGATTAATCAAATTAATCATCTTATTAATGTGCATCCTTTATATATGAATCTCAATTGTATTTAAACCCTTTTAAATACCTTATCCCTCATTTTCTAATTTAATTCATAATTAAATCATTGTGTCAAAACACATTTTACGATAATTCCCTATTTCTCGTTTTTGAACGATTCAAAAAATTCCTATCGATATGTTCTAGGCTTTAATCCGATATGAGCTAGTAGGGGGACCTAATGGACCTATAGATCATGGGCTCCAACAATTCGAGGCTAACCGACTAATCTCATTATCTAAGCTAGCCAACATTCGTTAACTACCGAGACATTCCACTATAGCCCGATAGTTGCACTCCCCTCACTATAGATATATTTCCGTCCACTTGATTTAACCATGTTCAGTAAGTTGTTCCTTCACAGGTTGTTCGTAGTTATAGCTAGGTCAAAAAACCGTTTCACCCCTATAGTACTTCTTGTTCCTTAAGTTCCACTAATCCTCTAATGAACAATCGGTTTATGGTCCAACCATCAAACCTAATTCCCTCTCGATTCAACGAGAGGGTGGGGCCCCTTGTTCAAGTCCTGGAGTTAGTACTTAAGGGAACAACCTCTCTGCTATCCCTGAAATGGGTAGGAGTGAATTCCGTCTTGCAAAACTATGTCCCCAGCTATCTATTCGATCTCATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCAATCTCACCCATGCAGATCAAAGGATAATCTCGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTATGAGAAATAGTCAGTTTCTTCAGTAAACGGCGTTATAAAGAGAAAGTGACTTATTTCGTGGTCCTGTCTTATGCAAACTCATTGCATAGGACGCCCCCACTCGCATGTCTCCACATGAACGACTTAGGATCTCATCGTTTGTACTTAATACAAAGTGGGCCGCGTCCATAGTGTCACCAGGATAAGGCACCCAACCGTATCCTTATACTATAGACTATTTTGACTATAAACTTGAACTTGATCCTACGATATGTCCCTACATATAGTTCGAGTATTCATTTTATAGTCAAGGATCTTAGTTTATTGGATTTAGGTTAATCATTCGCAATTTACATATTCAATAACATCTTTTACTGAATAACCTCAATAACGTCTTTATTGGAAGTAGAATATGTTTAATGATTTACAAACTACGAGTTTATAGGACATTAAACCCAACAATTAGACCGTTTGAGTTGGTGAACGCCAGTAGTTGAGCTAGGGATAACCTAATGCTTGATCGGTAGAACTTCATTGGTGTTGAAACCTATTCCAAAAAATCCAGAGTTCCAAGAGGATCCTGCTGATAAGGCTGCAAGAGATTGCCTGATCAATAGAATTGCTAGAGCATCTTTTTAACAACTGCAGAAGTCTTAACCAATGCCTGTTTCCAATCTGTCTTCTTTATCTGTTTACATTTCTGCTTTATCATTTCTTTTGTTCCCGCATTATTCAAAATCCAATCAATTTATCAACCTTGAAATCACTAAAAAGACTAAAACAAAATAGGTAAAGTGAGACTATTCAAGACCTCGTGGATACGATAAAATACTTATTACTTGCTACGAATTATATGCACTTGCATAGTGTTTTGGAGTTAATTCATATCATCTTTTTAACAACTCCAGAAATGCAACAAGTTTTTGGCGGTGTTGTCGGGGACTTGAATTAGTTTTTATCTGATCTGTTTTCTGTGTGTGTTTTTTAGTGATTTGGTGTGTGAACTTTTTTATTGTTTCTTTTTGTTTTGTAGGTGTGAGATTGGTGTATGAGCGATCCTCCTGGGGTGAGATTCGAGCTTGACCCAGAGATTGGGCGGACATTCAAAAGGAGAAGGAGAGAGCAGCAAAGGAATATCAATCCAATGGCTGACCTTTCGCGTCTTCCAAATATCCCAGAAGATCAAGCTGATCCCCAACAGAACTGTGTGCTACAGCAAAATCCACCTTCGGAGCAAAATGGACAGCAAAATAGCCAGGCTGAGAACCCTATTCTTGTGGCGAATGATAGGGTCAGAGCCATTCGAGCGTATGCGTTCCCAATGTTCGATGACTTAAATATAGGAATTGTGCGTCCTCAAATTGAGGCAGCAAACTTTGAAATGAAACTGGTCATGTTCCAGATGTTGCAGACTGTGGGTCAATTCCATGGTTTACCATCTAAGGACCCCCATTTAAATCTTAAGTCTTTTCTAGGAGTTAGTGATTCGTTTGTTATTCAAGGAGTGTCGAGAGATTCCCTTAGACTGACTTTGTTCCCGTATTCTCTCAGAGATTGAGCAAAGGTGTGGTTAAATTCTTTTGCCCCAGGATCAATTAGTACATGGAATGAGTTAGCGGAAACATTTCTTAGTAAGTATTTTCCACCAACTAGGAACGCCAAGTTGAGGAGTGAGATAGTGGGATTTAGGCAAATAGAAGATTAAACTTTTAGTGAGGCTTGGGAGAGGTTTAGGGAGCTTTTGCGAAAGTGTCCCCCCACGATTTACCACATTGTATCCAAATGGAAACATTTTACAATGGGTTAAACATAGCAACCTAGGGTATGGTCGATGCTTTTGCGGGAAGGGCCCTTTTGGCAAAAACCTTTAATGAAGCCCATGAGATTTTAGAGAGAATATCAACCGATAGTTGTCAGTGGTTAGATGTTAGAAGCTCTAGTACGAAAGTGAAGGGTGTAATAGAAGTTGATGTTGTGTCTACCATTAGGGCTGATATAGCAGCATTAGCTAACGCTTTTAAAGGCATAACTGTGGTAAACAATGTTCAGCAACCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAGTGGCAACCGAATCATGTGTCTATTGTGGTGAAGAGCATAATTATGACTTTTGCCACACTAATCCAACTTTTGTGTTTTTTGTAGGTAATCAGAGGAATAAGCCATATTCAAATTTTTATATCCAGGTTGGCGTAACCACGCTAACTTTGCATGGGGAGGGGAAAGAAACAATTCTCAAGCCCCCCAAGCACAACAAAAGGTGGCGAACCAGTCAGGATTTGCTAAACCGCAGGGAATGCCCCAACAAAATTTAGAGAGTTCTCTGGAGTCATTGATGAAAGAATATATGGCTCGTAATGATGCCGCTGTTCAAAGTAATCAGGCTTCATTGAGAGCCCTAGAATTGCAATTGGGTTAGCTAGCTAATGAGCTGAAGGCACAACCTCAAGGTAAACTCTCTTCCGATACTGAGCACCCTAGAAGGGAGGGTAAGGAGTAGGTGCATGCAGTAACTCTAAGGATTGGTAAGCCACTAGAAGAGAGAAGAGAGCCTAGTAAATCCAAGGAAGTAGAGAAGAATAGTGATAAAAATGTTGTTGTTGAAAAAGAGTTCGAGTCTGGTAAAAATGATGGAGGCAGTAGTAATAATGTTGGAGCATCTAGTTCTGTTCCAGATGTAGAACCACCTTATGAGATAAACGGGGGAAATCAAATAGTAACAACTTTAAGCATTAGATTGCGCTCACTTATGCGCCCACAAGTTACTCAGGCATTGCAGTCGGCTGAGAAACACTATCTATGTTGCCCACATAGACATGGTGCAGATAGCATCTCTCAGTTGCGCCCACAATTACCATGACAACTAGATTGCGAGTTAAGTCCAACTATTATTCAACTCCGCTGTAGGTGCCTTTAGAAGACTAAGCCAACTAGACACCTATTTCTAGGGCTAGTGGAAACTTAGATAAATAACGCTCACAACTTTTAAAATCCTAGTGGTTCCAGTCGTATTTCTAGGATGCAAGAAGACGAATTCCTATTTCTAGGATCTTTTACACTATTGTTTTGCGAACATGCACCTTTAACTCCAACCTTTCGGCCATCAGCTAAATACAAACTATGCTAACCTAAGTGATTAGTTTAAACTAACAATAAACTTTAATTTCAACAAAAACAAACAATGCTAAAAGGAAGCAAGTTGCTTTTGCATAGGTGGAGTTTTCTTCTACTCAAGGAATCCACGTATTTGAATCCCCAAGAAGAAGCTTAGCTCATAATTGAAGATAAAGTGCAAAACGATAAGTAAAAAGAACAACAAATGGAAAAACAAATAGAATTCATATTAGTTGAATGAATGGAGTACAAAACTTATAACTTACAACTGAAATAAAGGAAAACATAAACTATAGAATGCTGGAAACAAAAAACTAAACCAGAAAATAAAAGACAAGACTCTATTAAGGATCTCTCCCTTTCTATCTAGCTTGCTTTTACACTTTTCCAAGGAGAGGCAGGCCTTTCTCTTATTCTTCTTTCGAATGGAAGAGCCGATAGAGGCTGAAAGACCCGAAACTCGGAGTGGTTACAAGATGAGAAGAGAGAAAAACATAAAAATCTATCCTAAGGATGAAATTTCGAGCTCTCTTTGCTTATTGCGCTTTGGTCCCCTTTTATAGACCTTGGAAGGTGAGGTTGGTTGCGGAGATCAGTGTGAGAAGGCCTTGGAAGGTAAGAATCTACAATCTTCGGAGATTTGA

mRNA sequence

ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACACCTTGGAAGGTGAGGTTGGTTGCGGAGATCAGTGTGAGAAGGCCTTGGAAGGTAAGAATCTACAATCTTCGGAGATTTGA

Coding sequence (CDS)

ATGAATTGTGTTGTCTTATTTTTGCTGCTTGATATGCTTTTCACGCGAGTTCTACAGGATTGCTCAGATGAAAAGTGTAACTGGGAGCAAGATCTTAAGGCTCATGGGATAGCTCCTGAAATCTCGGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAACAGAAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATCACCTAGCCCGGTATTACAAAAAGACAAAGAAGCTTCCCCCCTGTTTGGACACCTTGGAAGGTGAGGTTGGTTGCGGAGATCAGTGTGAGAAGGCCTTGGAAGGTAAGAATCTACAATCTTCGGAGATTTGA

Protein sequence

MNCVVLFLLLDMLFTRVLQDCSDEKCNWEQDLKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKKLPPCLDTLEGEVGCGDQCEKALEGKNLQSSEI
Homology
[Close]
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-27
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.4e-26
Identity = 58/63 (92.06%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK VSIRKHLER RKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.2e-25
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLY LIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYK+TKK
Sbjct: 75  LKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match: A0A5N6R135 (Ribosomal_S13_N domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008223 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLDTLEG 102
           LPP    +EG
Sbjct: 135 LPPVWKYVEG 144

[Close]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match: A0A7J9BLE2 (Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium gossypioides OX=34282 GN=Gogos_010477 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.6e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLDTLEGEVG 105
           LPP +D  +   G
Sbjct: 135 LPPRVDYCQHPCG 147

[Close]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match: A0A7J9IX07 (Ribosomal_S13_N domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_011486 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.6e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 43  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 102

Query: 92  LPPCLDTLEGEVG 105
           LPP +D  +   G
Sbjct: 103 LPPRVDYCQHPCG 115

[Close]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match: A0A7J8X0C8 (Ribosomal_S13_N domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_011959 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.6e-25
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 43  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 102

Query: 92  LPPCLDTLEGEVG 105
           LPP +D  +   G
Sbjct: 103 LPPRVDYCQHPCG 115

[Close]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match: A0A7J7CDY4 (Ribosomal_S13_N domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00994 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLD 98
           LPP  D
Sbjct: 135 LPPASD 140

[Close]
BLAST of Lcy08g009100 vs. NCBI nr
Match: KAE8022421.1 (hypothetical protein FH972_008223 [Carpinus fangiana])

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-25
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLDTLEG 102
           LPP    +EG
Sbjct: 135 LPPVWKYVEG 144

[Close]
BLAST of Lcy08g009100 vs. NCBI nr
Match: MBA0736994.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLDTLEGEVG 105
           LPP +D  +   G
Sbjct: 135 LPPRVDYCQHPCG 147

[Close]
BLAST of Lcy08g009100 vs. NCBI nr
Match: MBA0680249.1 (hypothetical protein [Gossypium aridum] >MBA0826659.1 hypothetical protein [Gossypium armourianum])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 43  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 102

Query: 92  LPPCLDTLEGEVG 105
           LPP +D  +   G
Sbjct: 103 LPPRVDYCQHPCG 115

[Close]
BLAST of Lcy08g009100 vs. NCBI nr
Match: KAF5732300.1 (hypothetical protein HS088_TW18G00994 [Tripterygium wilfordii])

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-24
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPPCLD 98
           LPP  D
Sbjct: 135 LPPASD 140

[Close]
BLAST of Lcy08g009100 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-24
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-28
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

[Close]
BLAST of Lcy08g009100 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-28
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 32  LKAHGIAPEISEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLARYYKKTKK 91
           LKAHG+APEI EDLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH LARYYKKTKK
Sbjct: 75  LKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK 134

Query: 92  LPP 95
           LPP
Sbjct: 135 LPP 137

The following BLAST results are available for this feature:
BLAST of Lcy08g009100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623025.8e-2793.6540S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592231.3e-2692.0640S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592241.3e-2692.0640S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462986.4e-2692.0640S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
Q69UI23.2e-2588.8940S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Lcy08g009100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6R1353.3e-2587.14Ribosomal_S13_N domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH97... [more]
A0A7J9BLE29.6e-2582.19Ribosomal_S13_N domain-containing protein (Fragment) OS=Gossypium gossypioides O... [more]
A0A7J9IX079.6e-2582.19Ribosomal_S13_N domain-containing protein OS=Gossypium armourianum OX=34283 GN=G... [more]
A0A7J8X0C89.6e-2582.19Ribosomal_S13_N domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_... [more]
A0A7J7CDY41.2e-2489.39Ribosomal_S13_N domain-containing protein OS=Tripterygium wilfordii OX=458696 GN... [more]
BLAST of Lcy08g009100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8022421.16.8e-2587.14hypothetical protein FH972_008223 [Carpinus fangiana][more]
MBA0736994.12.0e-2482.19hypothetical protein [Gossypium gossypioides][more]
MBA0680249.12.0e-2482.19hypothetical protein [Gossypium aridum] >MBA0826659.1 hypothetical protein [Goss... [more]
KAF5732300.12.6e-2489.39hypothetical protein HS088_TW18G00994 [Tripterygium wilfordii][more]
XP_022143980.14.4e-2493.6540S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom... [more]
BLAST of Lcy08g009100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.19.1e-2892.06Ribosomal protein S13/S15 [more]
AT4G00100.19.1e-2892.06ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 29..106
e-value: 3.0E-6
score: 29.0
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 33..90
e-value: 8.0E-13
score: 48.4
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 55..85
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 32..94
e-value: 8.40418E-21
score: 77.9286
NoneNo IPR availableGENE3D1.10.287.10coord: 39..97
e-value: 1.3E-29
score: 104.3
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 32..95
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 32..95
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 28..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g009100.1Lcy08g009100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome