Lcy08g004390 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAACAAAGAAAGAAGAAGAAGATGTAGGAAGTTTCAAAAAAGAAAAGGAAAAGGCCCCTTTTTCGAGCAGCGGCGGCAGGGTTTAGCATTTGAATGCCCTAAGTCTAAGACGGAGCTCCGTTCATCGTGGCCGATTGCATAGAATTTCTCGCTGCATTCTCAGATTTACCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGTAATTTCCTCAAAAGCTTTCGATTTCGACGAAGTGTGCTCAATGTAAATTAACTATGAAATCTGTCTGAGTTGAGTTAACTGCGACGACTAAGGATCGAGAATAGGGCACTTGTGCCGATGTGGATCGGAAACGAATGCTGAATTGAGTTGAAAATAAGCTGAATGTTCTCGTTTGTGATCATTTATTTATTTAATTCTGTGAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGGTACTTTCAGTCTCTTGTTCTTCTAGTAGTTTCTAGGAATCGGACCAAGTTATGAGCAATTATACTAGGATGAATTTTACTCTTTTCAATGTCTTGTTATGCTGTCAGTTTTTTCTTTGGTTCTGGTTTTTGTTGGCAAAAAATTAAATCTGCTGTGTTGGTTGAATAGCTTTATTAGTTACTTGGATTGGCTTTGTGATGTACAACACAGAGGAGGATAACATGTGATATACACAATAGATCCTTTAAATTTGGACCTTAGAATGTAGGATGAGAAATAGGATGGGAAAATAGTGGAGGGAGGGATATTTTATTTATTTATTTATTATTTTTATATATACAAGAAACACGAACTTCTCACTGATATTTGAGAAGTTATAGATGAAGATGAAGAGATGAGCTTTTATAATTCATTTCATCATAATTTTCACCAAGTGATTGAAAACAATAATAGGAAACTATCTAGAAAATAATTCTCCACTTGCTCATGTTAAACCATCAACAGTATTTTGGTATTTTGGGCAAATATATTTCCCCACTGCATCAGTAATCTAAAGTCTAAACGCTCTTTTGGCTTGATTGAGCAGATGTTTTTTGCTATCTTTTTCATATCAGTGAATCAAGAATCTGAGTTTATTGTCTTAAGATAAATATAAAATGCTGCATTCTGGATTGGGGTCTAACTTTTTCACCGCTAAAAAACACAAAATGGCTTTCATCCACATACTTGAAATTAAATGTGAAGATACTAATTGCTATGTTTAATCAGTGTTCAATGATGATGTGTGATGAATGGTCAAGGGGATTCGAGAGAAGATTTTTATGCAGAGTTCCACATTGTGACAGTGCCCGCTGCTAAATTAGATGAGCTGATGCACAGGGATTTGGTTTTCCATGTCTTGACTTTCAGTCAAGTTTGCATGTCTTGAATTCCTAATTTGTGTAACTATGGATCACTAGAATGTATAGGAACATCTACCGTAGACAGACATTTGCCTTTTATTTGAAAAGGAAGGCTTTAAAAAAATTGTGCTCATGGAGTCATTATGTTGGATTACTTTATAGAAATGTCTTGCAATTTTGAAATAAAAATGCTTATGGAGATAAGACTTGGAGATTCTTCTCTAGCAGTCTTTATGTTATCTTGTATGTTACTCTATCTTTACTCATTCTATGTGGATACCTCATGTTTTTGATGGATGCTTGTTTTCTAAAACTCTAAAAGTTGTTGTGTACTAAATATTATTCTATGAGCTCGAAAAGATTATCGAATACAATGCCTTTAGGTAACTTCCAATCAAAGTTAATAACTGCATTTATCTGCTGACGTGTGGAAGGCTCTTTGATACTAAACAGTAATTTGAAGTAGCAGTACTCTAATGGCTTTTGATTCATTTATGTCCAATAAGAGTTTAGAAATCCTTTCCTCGTTTTTTAACGCCATTTAATATCCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATATACGTTGAATAGAGAAGGTTCGATTATCTGGCAAACATATTCAACCAAGTAATCTTCGATGGCATTGGCTACCAGGGGTTTAAGCCTGGCATAGCGATCTTTTATTCTAAAGTTTGTTTCCTGAGCATGTTTGATCGATTCTCAAGTACAAGTAAAAGAAAATTTCCAACTTGTCCCCTGTTTCTGTCATTGACAAAATACCATGATTGCTTGTTCTAATTTATACTTCTTCTGATATGTTATATGTTACTGAAATTTTAATAATTTACACAAGTTGTGATTCTCTCCTAGAAATGATTACAATTTATAATGCGTATACACAGTTGCACTCGTGACTTGCCTTCAACTATACTCAAATAACCTAAGTATGATGAGCAGAGTTGCTGGAGACCATCAATAGAGTTCCGTGAGTGCAAAGGTTATAATGCAAGTTCAGTATAGCTTTTGTCAAGGAAATAACTGTGCAAGTTAGCTGAATATCATAATGGTTTTTTTTTTTTTCCAGAGAAAAGAGGTAACAAAATGCAAATGCATTGGTAGAACCTTCTATTTACTTTTCCAACTAATACGACCAGGAAGTAACATGTGCACTTGCCGTTCCAGATCTTTATCACATCAGATCCAAACTAAGCAGGTAATAGTCACAGCAATAATCAACTTATATTACCTTCAGCAAGATTTGTGTTGCCATATAAAACTGTATACCAGTTAAATAGCAGTCCACCACACAATAGAGAAAGTAAATCCATGATAAATTAACATTGCACTATCCAAAGTCACTCTTCGACGTTAACTAATTCATATTCAACCAGAGAGAGATTGTTGTCTTCTTTAACTTCAAAGTTAGCTGGTTCAGCAACTTCAATTCGTCCCCATTTATCTACTGCTAACCTCATAGAACCTTTAAACATGTCAATCTTTGCATTCCGCAGGGTCACAGTGTTTCCTGGCTTCATGATATCAACTGCAAAAGTTACGACCATTTGTTTAATTAGACAACAAAACACCATAAGCATTGAAGCTTTTTATTTTACTGGAGGTGGGAGGTAAGGATTGAAGATTACTCCACTGCCTCAACATACAAAAAACTCGAACTCGAGCACAAACTCAAATACATGACCGTCCAGCCTCAGAATGTGACTAATTCCCAAATAATGAACAAATTTTATCCCCAACACAAATAAGATTTACACACACGTCTGTTTTTCTAATCAGGATGGCTGTCCCACTAATCTAAAAAAATAAAGGTACATTCTTGCATTCATCTCAAAGACCAAAAATAACAAAATGTCACCATCCGGCTTCAGAATAGCTTTTTTATGCAAAAGAATGTTGAGAAGTACAATGATTGTTCAAAATCCGCTAAACAGAGCATACATATACAGGTAATATCATAAAAATAGTAATCTCTAGCAACCAAGATAACGAACAAGATGACTGTGAATAAGGGCTGGTTCCTTGTCCTCTTCCACCCAAACCCACAAATGGATTGCCATAGGTTCTTATAACCAAGCAGAGCCAAAAACACCAACAACTACGTTCAAGGCAAGAGATATAGAGACGACTATGCAATTAAATTAACAGCAGATTTTAAGTCAGAAGAAACATCTAAGTTGAGACATAAAGGGTGTCTGCAGCCATAGACCTTAATCCAGTATCTCAAAGCTCCTGATTTACAGAAGATGAACAAAAATGAGCTCTATCTTGACCAGTAACATCCCTCATACCTCAGAGAGAATGACTTGCTCCAGAAATAATAAAGAAGAAACTCACGGACCAGAAAACTCATACACTAACTATCCTCAAGCTCCGTTCAAGAGCTAGAACTAGAGACACTCTTCCCTAAAAGAATTCCAGGTAGTCTGTTTCAAATTTCAACAATGTAGTTTCCTTTGCACCCTCAGATCAAGGTATCTAAGAAACCCTTCAAATCTGCAGGAATCTTCCGAACTTATATTGAACAACAATCACATACACATTCTTCCTCCATAGATTAAAGTCTTCGGCCCAAAAAAGCATTTCTATTTCAAACCTTGTTAAAGCCATTTAAAGTTTTCTTGATTCTCATTGATTGATTGGGATACCTCCATTAGACAAGACCCTATCTTTGATACCACTCCTTGTTATACAATTATCTCAACACCCAAATTCTATTTATATTAGAACACATCCATTCAAAAAAAAATTAACAGAACAAAAGATCCAGGGTGGTTCAGCACAGACGAGTCACTATAAGCTTAAATAAATTTTTGTTGGGGCACCTTCTAGTAACTATAAAAGGAGGTTTCTTTGATGGGCTACCTTTCAGAATACCCCTGAACGGAGTAACTTCTCTATTATCAAGGAAAAGTTTCTATTGCTAGTTATAAAAAAAAAACAAAAGCTACAGAGAAGAATACTAAATTCACGAGGCACAAAGATGAAATTCATAAACAAAAAAGAAAATCACTCACTATTCAAAAGAATTCTCACTCACAGCAAAAAAAAATCCAACAGAAATGAAGAGCCCACATCCCAATTTTAGAAAAAAAAAAAAAACATCCAAGAAAAAGGAAACTAATATCCATCCATTCTATCCAATGTTTTTTCATGACTGTACACAAAATCGCCTGAGCAAAACACATGGAGACATCCAAAAGATGAGAAAAAGTAGGCTAACAAATACTTTTATGGCTGCAGAGAAACATACCTTGGTCGTTTCGAGCTGTGAAGACGATGGAACCAGTCTCATCACCAACAAGACATTCAGAGATACGAGTTAATTGCTGAGGGCGAGCCGTAAGCATGGCGGATCGTCCACCTTTATTGACCACCTTGACATTTTTGGAGCTCACAACCTTGACCGTGAGAGTGTGGCCGCTCGTACCAGGCTTTAGCTCTTCTACTTTAATGAAGACAGGCTTCCTCTTTGCAGGGGCATTCACTGTTGCCGTCGCCATGGAAATCGAGGTAACGGAACGAAACCCTGTTGCCGATGAGAATGCACCGTGAAAATGGAGAATGAAATCGAACCCTGAAGGTCAAAACCCTAACCCTAAGAATTTAATTTCGGATTGCACTCGCATTTGGGATTTTCAGATTAGGTTTCGAAATATGGGCTCATTTCTTGTCACTGGATTGGGCTGGGTTAAGATTTTGGGCCCTGGGCTTCGATTAAATTATAAATTTAGTCCTTGTCT AAAAAACAAAGAAAGAAGAAGAAGATGTAGGAAGTTTCAAAAAAGAAAAGGAAAAGGCCCCTTTTTCGAGCAGCGGCGGCAGGGTTTAGCATTTGAATGCCCTAAGTCTAAGACGGAGCTCCGTTCATCGTGGCCGATTGCATAGAATTTCTCGCTGCATTCTCAGATTTACCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGATATACGTTGAATAGAGAAGGTTCGATTATCTGGCAAACATATTCAACCAAGTAATCTTCGATGGCATTGGCTACCAGGGGTTTAAGCCTGGCATAGCGATCTTTTATTCTAAAGTTTGTTTCCTGAGCATGTTTGATCGATTCTCAAGTACAAGTAAAAGAAAATTTCCAACTTGTCCCCTGTTTCTGTCATTGACAAAATACCATGATTGCTTGTTCTAATTTATACTTCTTCTGATATGTTATATGTTACTGAAATTTTAATAATTTACACAAGTTGTGATTCTCTCCTAGAAATGATTACAATTTATAATGCGTATACACAGTTGCACTCGTGACTTGCCTTCAACTATACTCAAATAACCTAAGTATGATGAGCAGAGTTGCTGGAGACCATCAATAGAGTTCCGTGAGTGCAAAGAGAAAAGAGGTAACAAAATGCAAATGCATTGGTAGAACCTTCTATTTACTTTTCCAACTAATACGACCAGGAAGTAACATGTGCACTTGCCGTTCCAGATCTTTATCACATCAGATCCAAACTAAGCAGAGAAACATACCTTGGTCGTTTCGAGCTGTGAAGACGATGGAACCAGTCTCATCACCAACAAGACATTCAGAGATACGAGTTAATTGCTGAGGGCGAGCCGTAAGCATGGCGGATCGTCCACCTTTATTGACCACCTTGACATTTTTGGAGCTCACAACCTTGACCGTGAGAGTGTGGCCGCTCGTACCAGGCTTTAGCTCTTCTACTTTAATGAAGACAGGCTTCCTCTTTGCAGGGGCATTCACTGTTGCCGTCGCCATGGAAATCGAGGTAACGGAACGAAACCCTGTTGCCGATGAGAATGCACCGTGAAAATGGAGAATGAAATCGAACCCTGAAGGTCAAAACCCTAACCCTAAGAATTTAATTTCGGATTGCACTCGCATTTGGGATTTTCAGATTAGGTTTCGAAATATGGGCTCATTTCTTGTCACTGGATTGGGCTGGGTTAAGATTTTGGGCCCTGGGCTTCGATTAAATTATAAATTTAGTCCTTGTCT ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGA MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS Homology
BLAST of Lcy08g004390 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 7.9e-11 Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34 Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 4.0e-34 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 3.4e-33 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 8.4e-32 Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 0
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36 Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 0
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.8 bits (395), Expect = 9.8e-35 Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34 Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 153.7 bits (387), Expect = 8.3e-34 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_004148697.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33 Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12 Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12 Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12 Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12 Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12 Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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