Lcy08g004170 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004170
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGlycine rich protein
LocationChr08: 5631021 .. 5631553 (-)
RNA-Seq ExpressionLcy08g004170
SyntenyLcy08g004170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAACCAGAGTTCTTAGACAAAGTTAAAATGAGTTCCAAATCCAATAAGGCATTTGCTTTTTTGGGTCTTGTCTTGGCCGCCATCATCTTCGACATCTCCTCAAAAGTGGTGGCAAGAGACCTTTTACACACTTCCAAGTACGACCAGGGAGGTCTCGGCGGCCGCGGTGGCTCCGCCGACAGCCCTGGCTGCGGTAACTATGCAAGATGCGGTGGATACGGTGGCAGCGGTTGCCGGCATGGTTGCTGCGGTGACAATCGCGGTGGTCGGTGCAGCAAGTGCTGTAGTTATGCCAGTGAAGTTGCATATGTAAGATCCTGAGACAGGATGGATTGTTACAATTACACTCACGAACTTTTAATCGTAAAATTGATCTTCTACGAATTTTACTAACTATTAAAACATTTTTGTGTTTGTCGACATTGAGTTTATCTTCATCAAATTTCTTTCAACTACTTTGCTAGAGATAGAACCAACGAAAGAAGATTAAAGAGTTTACCTAAATTGAAATGCAAAGCTCGATCGAGTGAG

mRNA sequence

AACAACCAGAGTTCTTAGACAAAGTTAAAATGAGTTCCAAATCCAATAAGGCATTTGCTTTTTTGGGTCTTGTCTTGGCCGCCATCATCTTCGACATCTCCTCAAAAGTGGTGGCAAGAGACCTTTTACACACTTCCAAGTACGACCAGGGAGGTCTCGGCGGCCGCGGTGGCTCCGCCGACAGCCCTGGCTGCGGTAACTATGCAAGATGCGGTGGATACGGTGGCAGCGGTTGCCGGCATGGTTGCTGCGGTGACAATCGCGGTGGTCGGTGCAGCAAGTGCTGTAGTTATGCCAGTGAAGTTGCATATGTAAGATCCTGAGACAGGATGGATTGTTACAATTACACTCACGAACTTTTAATCGTAAAATTGATCTTCTACGAATTTTACTAACTATTAAAACATTTTTGTGTTTGTCGACATTGAGTTTATCTTCATCAAATTTCTTTCAACTACTTTGCTAGAGATAGAACCAACGAAAGAAGATTAAAGAGTTTACCTAAATTGAAATGCAAAGCTCGATCGAGTGAG

Coding sequence (CDS)

ATGAGTTCCAAATCCAATAAGGCATTTGCTTTTTTGGGTCTTGTCTTGGCCGCCATCATCTTCGACATCTCCTCAAAAGTGGTGGCAAGAGACCTTTTACACACTTCCAAGTACGACCAGGGAGGTCTCGGCGGCCGCGGTGGCTCCGCCGACAGCCCTGGCTGCGGTAACTATGCAAGATGCGGTGGATACGGTGGCAGCGGTTGCCGGCATGGTTGCTGCGGTGACAATCGCGGTGGTCGGTGCAGCAAGTGCTGTAGTTATGCCAGTGAAGTTGCATATGTAAGATCCTGA

Protein sequence

MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNYARCGGYGGSGCRHGCCGDNRGGRCSKCCSYASEVAYVRS
Homology
BLAST of Lcy08g004170 vs. ExPASy TrEMBL
Match: A0A6J1ERA6 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 60/94 (63.83%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNYA- 60
          MSS   KAFAFLGLVL  I+ DISS+V ARDLL T KY +GG G   G  D+PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLGVIVVDISSEVAARDLLQT-KYSRGGNGSGSGVDDNPGCGNYID 60

Query: 61 RCGGYGG-SGCRHGCCGDNRGGRCSKCCSYASEV 93
           C G+G   GC+HGCCG   GGRCSKCCS  SEV
Sbjct: 61 SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Lcy08g004170 vs. ExPASy TrEMBL
Match: A0A6J1JMN0 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.6e-17
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNY-A 60
          MSS   KAFAFLGLVL  ++ DISS+V ARDLL T KY +G  G   G  D PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLGVVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDIPGCGNYFD 60

Query: 61 RCGGYG-GSGCRHGCCGDNRGGRCSKCCSYASE 92
           C G+G   GC+HGCCG   GGRCSKCCS  SE
Sbjct: 61 SCRGHGPDGGCQHGCCGTKNGGRCSKCCSNVSE 92

BLAST of Lcy08g004170 vs. ExPASy TrEMBL
Match: A0A5D3BTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00260 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAII--FDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNY 60
          M+  +++ F F+  ++ +II    +SSKV  RDLLH          G G SAD+PGCGNY
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLH---------DGHGSSADTPGCGNY 60

Query: 61 ARCGGY----GGSGCRHGCCGDNRGGRCSKCCSYASEVAYVR 97
           RCGGY    GG GC HGCCG NRGGRC +CC+YA+EV  V+
Sbjct: 61 NRCGGYGRGGGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVK 93

BLAST of Lcy08g004170 vs. ExPASy TrEMBL
Match: A0A0A0K6K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.8e-14
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAI--IFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNY 60
          M+  ++K F F+  ++ +I  +  +S KV ARDLL           GRG SAD+PGCGNY
Sbjct: 1  MNYSNSKHFPFVTTLVFSIVVVLVLSPKVAARDLLS---------DGRGSSADTPGCGNY 60

Query: 61 ARCGGY----GGSGCRHGCCGDNRGGRCSKCCSYASEVAYV 96
           RCGGY    GG+GC HGCCG NR GRC +CC+YA+EV  V
Sbjct: 61 YRCGGYGRGGGGNGCSHGCCGFNRDGRCIQCCNYANEVTNV 92

BLAST of Lcy08g004170 vs. ExPASy TrEMBL
Match: A0A067F4R8 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032762mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-05
Identity = 46/106 (43.40%), Postives = 53/106 (50.00%), Query Frame = 0

Query: 6   NKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQ------------------GGLGG-R 65
           +K F  LGL L +I+  ISS+  ARDL  TS  DQ                  GG GG  
Sbjct: 3   SKVFLMLGL-LVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGGYP 62

Query: 66  GGSADSPGCGNYARCG-GYGGSGCRHGCCGDNRGGRCSKCCSYASE 92
           GG    PG G Y   G G+GG  CR+GCCG    GR  +CCSYA E
Sbjct: 63  GGGRGYPGRGGYGGGGRGHGGGYCRYGCCGRGYYGRGCRCCSYAGE 107

BLAST of Lcy08g004170 vs. NCBI nr
Match: XP_022930692.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 60/94 (63.83%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNYA- 60
          MSS   KAFAFLGLVL  I+ DISS+V ARDLL T KY +GG G   G  D+PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLGVIVVDISSEVAARDLLQT-KYSRGGNGSGSGVDDNPGCGNYID 60

Query: 61 RCGGYGG-SGCRHGCCGDNRGGRCSKCCSYASEV 93
           C G+G   GC+HGCCG   GGRCSKCCS  SEV
Sbjct: 61 SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Lcy08g004170 vs. NCBI nr
Match: XP_023530312.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-18
Identity = 59/94 (62.77%), Postives = 66/94 (70.21%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNYA- 60
          MSS   KAFAFLGLVLA ++ DISS+V ARDLL T KY +G  G   G  D+PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLAIVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDNPGCGNYID 60

Query: 61 RCGGYGG-SGCRHGCCGDNRGGRCSKCCSYASEV 93
           C G+G   GC+HGCCG   GGRCSKCCS  SEV
Sbjct: 61 SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Lcy08g004170 vs. NCBI nr
Match: KAG6589123.1 (hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 59/94 (62.77%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNYA- 60
          MSS   KAFAFLGLVL  I+ DISS+V ARDLL T KY +G  G   G  D+PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLGVIVVDISSQVAARDLLQT-KYSRGDNGSGSGVDDNPGCGNYID 60

Query: 61 RCGGYGG-SGCRHGCCGDNRGGRCSKCCSYASEV 93
           C G+G   GC+HGCCG   GGRCSKCCS  SEV
Sbjct: 61 SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Lcy08g004170 vs. NCBI nr
Match: XP_022989540.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAIIFDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNY-A 60
          MSS   KAFAFLGLVL  ++ DISS+V ARDLL T KY +G  G   G  D PGCGNY  
Sbjct: 1  MSSNFIKAFAFLGLVLGVVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDIPGCGNYFD 60

Query: 61 RCGGYG-GSGCRHGCCGDNRGGRCSKCCSYASE 92
           C G+G   GC+HGCCG   GGRCSKCCS  SE
Sbjct: 61 SCRGHGPDGGCQHGCCGTKNGGRCSKCCSNVSE 92

BLAST of Lcy08g004170 vs. NCBI nr
Match: KAA0059145.1 (hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK02545.1 hypothetical protein E5676_scaffold201G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 0

Query: 1  MSSKSNKAFAFLGLVLAAII--FDISSKVVARDLLHTSKYDQGGLGGRGGSADSPGCGNY 60
          M+  +++ F F+  ++ +II    +SSKV  RDLLH          G G SAD+PGCGNY
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLH---------DGHGSSADTPGCGNY 60

Query: 61 ARCGGY----GGSGCRHGCCGDNRGGRCSKCCSYASEVAYVR 97
           RCGGY    GG GC HGCCG NRGGRC +CC+YA+EV  V+
Sbjct: 61 NRCGGYGRGGGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVK 93

BLAST of Lcy08g004170 vs. TAIR 10
Match: AT2G05380.1 (glycine-rich protein 3 short isoform )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 30/60 (50.00%), Postives = 32/60 (53.33%), Query Frame = 0

Query: 41  GGLGGRGGSADSPGCGNYARCGGY---GGSGCRHGCCGDNRGGRCSKCCSYASEVAYVRS 98
           GG GG GG     G G Y   GG    GGS CRHGCC     G CS+CCSYA E    +S
Sbjct: 56  GGHGGHGGGGYQGGGGRYQGGGGRQGGGGSYCRHGCCYKGYHG-CSRCCSYAGEAVQTQS 114

BLAST of Lcy08g004170 vs. TAIR 10
Match: AT2G05520.5 (glycine-rich protein 3 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 38/103 (36.89%), Postives = 47/103 (45.63%), Query Frame = 0

Query: 5   SNKAFAFLGLVLAAIIFD----ISSKVVARDLLHTSKYDQGGLGGRGGSADS-------- 64
           ++KA   LGL    ++       SS  V  +   T K DQ G G  GG+ ++        
Sbjct: 2   ASKALVLLGLFAVLLVVSEVAAASSATVNSESKETVKPDQRGYGDNGGNYNNGGGRYQGG 61

Query: 65  ----PGCGNYARCGGYGGSGCRHGCCGDNRGGRCSKCCSYASE 92
                G G     GG GGS CRHGCC     G CS+CCSYA E
Sbjct: 62  GGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNG-CSRCCSYAGE 103

BLAST of Lcy08g004170 vs. TAIR 10
Match: AT2G05380.2 (glycine-rich protein 3 short isoform )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 40/102 (39.22%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 5   SNKAFAFLGLVLAAIIFDISSKVVA----RDLLHTSKYDQ--GGLGGRGGSADSPGCGNY 64
           ++K    LGL   A +F +S    A     +   T K +Q  GG G  GG     G G Y
Sbjct: 2   ASKTLLLLGLF--AFLFIVSEMAAAGTVKSESEETVKPEQHGGGFGDNGGGRYQGGGGRY 61

Query: 65  ARCGGY---GGSGCRHGCCGDNRGGRCSKCCSYASEVAYVRS 98
              GG    GGS CRHGCC     G CS+CCSYA E    +S
Sbjct: 62  QGGGGRQGGGGSYCRHGCCYKGYHG-CSRCCSYAGEAVQTQS 100

BLAST of Lcy08g004170 vs. TAIR 10
Match: AT2G05520.6 (glycine-rich protein 3 )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 40/109 (36.70%), Postives = 49/109 (44.95%), Query Frame = 0

Query: 5   SNKAFAFLGLVLAAIIFD----ISSKVVARDLLHTSKYDQGGLGGRGGSADS-----PGC 64
           ++KA   LGL    ++       SS  V  +   T K DQ G G  GG+ ++      G 
Sbjct: 2   ASKALVLLGLFAVLLVVSEVAAASSATVNSESKETVKPDQRGYGDNGGNYNNGGGYQGGG 61

Query: 65  GNY-------------ARCGGYGGSGCRHGCCGDNRGGRCSKCCSYASE 92
           GNY                GG GGS CRHGCC     G CS+CCSYA E
Sbjct: 62  GNYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNG-CSRCCSYAGE 109

BLAST of Lcy08g004170 vs. TAIR 10
Match: AT2G05520.1 (glycine-rich protein 3 )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 27/55 (49.09%), Postives = 30/55 (54.55%), Query Frame = 0

Query: 37  KYDQGGLGGRGGSADSPGCGNYARCGGYGGSGCRHGCCGDNRGGRCSKCCSYASE 92
           +Y  GG   +GG     G G     GG GGS CRHGCC     G CS+CCSYA E
Sbjct: 84  RYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNG-CSRCCSYAGE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ERA61.1e-1863.83glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE... [more]
A0A6J1JMN07.6e-1761.29glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4... [more]
A0A5D3BTN83.2e-1550.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6K97.8e-1450.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1[more]
A0A067F4R86.6e-0543.40Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032762mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022930692.12.2e-1863.83glycine-rich protein DC7.1-like [Cucurbita moschata][more]
XP_023530312.18.3e-1862.77glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo][more]
KAG6589123.11.4e-1762.77hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022989540.11.6e-1661.29glycine-rich protein DC7.1-like [Cucurbita maxima][more]
KAA0059145.16.6e-1550.98hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK0254... [more]
Match NameE-valueIdentityDescription
AT2G05380.11.1e-0450.00glycine-rich protein 3 short isoform [more]
AT2G05520.51.1e-0436.89glycine-rich protein 3 [more]
AT2G05380.21.5e-0439.22glycine-rich protein 3 short isoform [more]
AT2G05520.62.5e-0436.70glycine-rich protein 3 [more]
AT2G05520.19.5e-0449.09glycine-rich protein 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004170.1Lcy08g004170.1mRNA