Lcy08g002100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g002100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	serine/arginine-rich splicing factor SC35
Location	Chr08: 2805459 .. 2809484 (+)
RNA-Seq Expression	Lcy08g002100
Synteny	Lcy08g002100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCTTCTTCGTCCTCTCGAACCCTAACCCTAATCTTCATCTTCCTATCAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCTCTTCTCGTGCTCAACATCACCTTCCGTACGCTTCTATCTCTCTTTCAATCCTTCTCGTTTCTTTTTTTGTTTTCTGGCTTTGTATCACGATACTGAGTTGCGACTGAGATTTTGTATGTTTTTAGGCACCACTGCTGATGACTTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGTATAATTCCTTCCTTTGTTGTTCCCCCTTTCTTGATTTTGATTTGATGGGTGTATTTTTTTGTAGCTTGTAAGAGTATCGTGTTAGTTAGATGAAACATATAGAGGTTTAGGATTGAAATGATTACCTTTCATTGATATTCATCTAGTTCTTAAGAAATCAGTTTTCACTCGACGGCGAAACGATATTCTTCATTCAGCTTAAATGCTACTTGGGTTCAGTTGGGATTTTATTATCATTATTTTTCTGTTTTTTTCGTTGGGAATCGATTGTTCTCGTTTTGACCATTGTATGATTGTCTCTTGTATTGTTTCTGGATCAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCAGCCACTTTTTCTCCTGTTGTTTGATTTTTTCCTCGTCCTCTCTAAGTGCAAGTAATTTGTAGATACTCACAAGTTGCAAGGAAGATGTTTGATAATTTTGTTTTGAGGATAGAAGGCTGATACTCTCTCTGGCGTTATTCACATCATTTTGGGCCTTATAATATCTTAAGTTCTGAAATCGACTCCCTCACTTCTTTTTTAGTTCTGGGTTTGACGTACAGTCATGCCTCCACTCTTTTCCATTTGATAAGTTTATTACATTTGGTTTGGGGAGGTAGTCTAATGCATATGAATCACGTTCCAGGCACTGTGGTCGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATGTGAGTAATGAAGTAGCGGTTTTGCTCTCTTTCATTTGTCAATAAATGCTCACGTTTGGTCTCAACTTTTCACTTTTTATATATATATATATATATATTATTTATTGCCAATGGGTATTGATTCTATGTCAAAATGTGCTTTTAGTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGGTAATTTTCTCTTCCGCATCCCTAAGAAATATTTTTCAGGTGCTGAATTTCTGTATATTAAGATTGAATAGTTGATATCCTTGAAAAATCTTATCTGGTTGTTAGAGTTCCTTGGTGGAATTATTATTTCACCAGCTTTAGAAGTTCAAGGGTGAAAGCTCCTACTGAAATAGAATATTGGAGGAATATGATGCAGCCGCATTTTTTGAACCCTCAGATTATTGTGATTACTTTTTTGTGCTGAGGATTATGTAGCGGACTCTTGTTTTTTCTGTCTCAGATATGAGGTTTGAAGTTGTTGCTCTGTCCAATGCCTTCATTCTATTTTAGGGTAACTATATTATCATGAGATGCCATAATTATGGAAATGTAGAATATCGGAAATTCTGTAAGGAAAATGTGTTAGTGTGTTCTATATATGGCCAGGATTAGCTAGTGATGCTCACTTTTTTCCTTTCATGTAGTTTGAGTTTTTGTCCATTTGCATGTAATGTTACTAATTGGAATTTCTCACTTTCTTGGATTATTAAGCCTATTAAGGCCCATTTCTATTTGAATTTTTGTAGTTTTATTATTGTTATTTATTCATGTTACTAATTGAATTTTCTCACTTTCAGACATCGGGATGATTACAGAGATAGGGATTATAAGAGGAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGCGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCCGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAGCGTAGAAGTCGTAGTCGCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGATAGGTCGTAAAGCTAGTATAATTTTTATCTAGTTGGAAAAGAGTTGGGACTTTGTCTAATGATTTTTATCCAGTTGGAAAAAAGTGGGGGAATTTCATTTCTAATCAGTCATTGTTCTACATATTACAGTGCTTCTCCCGGTAGACGAAGCCCTAGTCCAAGGAGGAGTTTATCTCCTCGAAGGAGTCTTTCACCTCAAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTAATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGCCAACCTGCTGATTCACGAAGCCCATCTCCTCAAAATTCAGATGTTGATGTGAGTTGGTTCATGCGCTATTTTGGATGATTAGTCTAGACTTGGTTTAAGTAGTTAACTATACACTTGCTTTAATTTTGACAGAAGTGAATACCGATGGGATGCAAGGACAACTAAGGACATAACTGAGCAGTGCAAGAATGAATGCTTTGAGGACACTCGTTGATTAAAAATGTTGACTATAAGTTCTAGTTTTGGTAGGACTTTCCTATGGTGTTCAATTATCATATATTGAGCTTAATGTGCCTATCTACTATCTTGTATCAGTTTGGTACTTTTTGGCTCTGCAGTCTGTATCCATATTTCCAGTCATAGGATATAGCTTGGGACATGTTCTTCCTCTATATTTCTGTTCTCTACCCTGTAGTAATACTTTATTTTGAGCATTTGTGGTGTCATTTCCTTTTTCCAGTATTTTCTTTTTTTCCTTTTTATATATTTGATCTATCCTGATTCATCATAAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGATTTATCAGTATGATTGTCTAAGCATTATGATGTTGCTGTGGACAGTGTCTTAACTAATATTCACTGGATGATAAAATTATTGGTAAGGTTTATGGTCACGTTTAAATGTTTTTAAAAACTCGATAATGCTTCAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTGTCTATCCAAGTTCTGAAAAGTTGCACCTCACCTGCAAGGAGATCTAGAGGCTTTGATATATAGGTTTGACCCCCCACCTACGTTGATTGATTTTTTTTACTCATAGCTGCTGATACATTTGAGGGGGTATTGATTTTAATGCTGAAGGCTGGTTTAAGAAAACTTAGCAGCAGGTTTGAACTTTGCATCAGAACATGATTATCCATGGTAACATAAGTTTATAGTTTTGTGTATTTTTTGAAGGGGTGGATTTAAACTTACAGGTTATTATCCCAAACTTTTAGATCAAACTCTTGCTGCTTGATGTGGTGACTGACTTATTGTAGCTTTCGAGTACACAATTGTTGCTGTGGTGTTTGATAGCAGATACCTTTATTGATGTACGATAGACATGGGTTCGATTGATTGATTCTGAAGTGCTAATACTGTAGCTGGTTGTTGCTGCCCTTGTTGTGGGGTGAGGCTGGCAATGATGTTTGCAGTTGCTTTCACAATGGATGCTTTGATGTTTGCTTGGCTCGAAATTAAGTTCTGCATGTATAATTATTGTTTACATCACTGTAAGAAAATTTGATTAATATAAATCATAATATTGGTTTACAACATTCGGAATTGCTCATTTTAAGTAGTTTGTGGTGAATTCGGATGGCTATTGTTTGCTCTGTGCCTGCTTTTGCTGCAACTACACTGTTTTTGGATTTGGAAATGTTACCTGTCTGATACTTTGT

mRNA sequence

CTTTCTTCTTCGTCCTCTCGAACCCTAACCCTAATCTTCATCTTCCTATCAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCTCTTCTCGTGCTCAACATCACCTTCCGCACCACTGCTGATGACTTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTCGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATTACAGAGATAGGGATTATAAGAGGAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGCGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCCGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAGCGTAGAAGTCGTAGTCGCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGATAGTGCTTCTCCCGGTAGACGAAGCCCTAGTCCAAGGAGGAGTTTATCTCCTCGAAGGAGTCTTTCACCTCAAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTAATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGCCAACCTGCTGATTCACGAAGCCCATCTCCTCAAAATTCAGATGTTGATAAGTGAATACCGATGGGATGCAAGGACAACTAAGGACATAACTGAGCAGTGCAAGAATGAATGCTTTGAGGACACTCGTTGATTAAAAATGTTGACTATAAGTTCTAGTTTTGTTATGTTCGGGGTAAGAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTGATAGATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGATTTATCAGTATGATTGTCTAAGCATTATGATGTTGCTGTGGACAGTGTCTTAACTAATATTCACTGGATGATAAAATTATTGGTAAGGTTTATGGTCACGTTTAAATGTTTTTAAAAACTCGATAATGCTTCAGGATTTGATGTTTGACCTGATTATCCATTCTGGTCTGTCTATCCAAGTTCTGAAAAGTTGCACCTCACCTGCAAGGAGATCTAGAGGCTTTGATATATAGGTTTGACCCCCCACCTACGTTGATTGATTTTTTTTACTCATAGCTGCTGATACATTTGAGGGGGTATTGATTTTAATGCTGAAGGCTGGTTTAAGAAAACTTAGCAGCAGGTTTGAACTTTGCATCAGAACATGATTATCCATGGTAACATAAGTTTATAGTTTTGTGTATTTTTTGAAGGGGTGGATTTAAACTTACAGGTTATTATCCCAAACTTTTAGATCAAACTCTTGCTGCTTGATGTGGTGACTGACTTATTGTAGCTTTCGAGTACACAATTGTTGCTGTGGTGTTTGATAGCAGATACCTTTATTGATGTACGATAGACATGGGTTCGATTGATTGATTCTGAAGTGCTAATACTGTAGCTGGTTGTTGCTGCCCTTGTTGTGGGGTGAGGCTGGCAATGATGTTTGCAGTTGCTTTCACAATGGATGCTTTGATGTTTGCTTGGCTCGAAATTAAGTTCTGCATGTATAATTATTGTTTACATCACTGTAAGAAAATTTGATTAATATAAATCATAATATTGGTTTACAACATTCGGAATTGCTCATTTTAAGTAGTTTGTGGTGAATTCGGATGGCTATTGTTTGCTCTGTGCCTGCTTTTGCTGCAACTACACTGTTTTTGGATTTGGAAATGTTACCTGTCTGATACTTTGT

Coding sequence (CDS)

ATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGATACCTACTCTCTTCTCGTGCTCAACATCACCTTCCGCACCACTGCTGATGACTTGTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTCGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCAAGATACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATTACAGAGATAGGGATTATAAGAGGAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGCGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCCGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAGCGTAGAAGTCGTAGTCGCAGCCGTAGCCGAAGTCGTGGCCGTAGTCGTTCTGTGGATAGTGCTTCTCCCGGTAGACGAAGCCCTAGTCCAAGGAGGAGTTTATCTCCTCGAAGGAGTCTTTCACCTCAAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTAATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGCCAACCTGCTGATTCACGAAGCCCATCTCCTCAAAATTCAGATGTTGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK

Homology

[Close]

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.8e-69
Identity = 190/314 (60.51%), Postives = 210/314 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DY++RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRS----RSRGRSRSVD 240
           R  E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S    R   RS S  
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQ 240

Query: 241 SASPGR----------RSPSPRRSLSPRRSLSPQRSPSPRGESPERNGNGGRSPTPRSVS 277
             SP R          RSPSPRRSLSPR     + SPS +  SPER  N  RSP+P S +
Sbjct: 241 KTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPA 299

[Close]

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-29
Identity = 115/246 (46.75%), Postives = 141/246 (57.32%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +  S Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPD 183
           PRRR           RRSRSRSRSRS  RS R R  R + R R  R RSRS         
Sbjct: 123 PRRR-----------RRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSP---RRSLSPRRSLSPQR 243
            SK R   R + +  S SRSRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPTSKRESNSRSRSKSPPK 217

Query: 244 SPSPRG 245
           SP   G
Sbjct: 243 SPEEEG 217

[Close]

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-29
Identity = 112/243 (46.09%), Postives = 139/243 (57.20%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPD 183
           PRRR           RRSRSRSRSRS  RS R R  R + R R  R RSRS S       
Sbjct: 123 PRRR-----------RRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRSTSK------ 182

Query: 184 YSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSPS 243
            S+   R + +    SRSRSRSRSR RSRS   A       S R S S  RS SP +SP 
Sbjct: 183 -SRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPA-------SKRESKSRSRSKSPPKSPE 217

Query: 244 PRG 245
             G
Sbjct: 243 EEG 217

[Close]

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 114/246 (46.34%), Postives = 140/246 (56.91%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPD 183
           PRRR           RRSRSRSRSRS  RS R R  R + R R  R RSRS         
Sbjct: 123 PRRR-----------RRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSP---RRSLSPRRSLSPQR 243
            SK R   R + +  S SRSRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 217

Query: 244 SPSPRG 245
           SP   G
Sbjct: 243 SPEEEG 217

[Close]

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 114/246 (46.34%), Postives = 140/246 (56.91%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPD 183
           PRRR           RRSRSRSRSRS  RS R R  R + R R  R RSRS         
Sbjct: 123 PRRR-----------RRSRSRSRSRSRSRS-RSRYSRSKSRSRT-RSRSRST-------- 182

Query: 184 YSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSP---RRSLSPRRSLSPQR 243
            SK R   R + +  S SRSRSRSR RSRS        RSP P   R S S  RS SP +
Sbjct: 183 -SKSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPPVSKRESKSRSRSKSPPK 217

Query: 244 SPSPRG 245
           SP   G
Sbjct: 243 SPEEEG 217

[Close]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.2e-132
Identity = 267/281 (95.02%), Postives = 275/281 (97.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+RRSRSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSP 240
           DYSKGRGRGRY+DERRSRS SRSRSRGRSRSVDS SPGRRSPSPRRS SPRRSLSP+RSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGN-GGRSPTPRSVSPRGQPADSRSPSPQNSD 281
           SPR ESPERNGN GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.3e-132
Identity = 265/281 (94.31%), Postives = 275/281 (97.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRHRDDYRD+DY+RRSRSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSP 240
           DYSKGRGRGRY+DERRSRS SRSRSRGRSRSVDS SPGRRSPSPRRS SPRRSLSP+RSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGNG-GRSPTPRSVSPRGQPADSRSPSPQNSD 281
           SPR ESPERNGNG GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 4.6e-131
Identity = 269/295 (91.19%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+R  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPR--------- 240
           DYSKGRGRGRY DERR+RSRS SRSRGRSRSV+SASPGRRSPSPRRSLSPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPQRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
              RSLSP+RSPSPRGESPERNG+GGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 7.3e-129
Identity = 264/285 (92.63%), Postives = 272/285 (95.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGTVVDGREITVQFAKYGPNAERIHKGKISEAF K RYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDD RDRDY+RRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSR--SRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQR 240
           DYSKGRGRGRY+DERRSRSR  SRS+SRG+SRSVDSASPG      RRS SPRRSLSPQR
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPG------RRSASPRRSLSPQR 240

Query: 241 SPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
           SPSPRGESP RNG+GGR+PTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SPSPRGESPVRNGDGGRTPTPRSVSPRGQPADSRSPSPQNSDVDK 279

[Close]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.8e-128
Identity = 266/301 (88.37%), Postives = 276/301 (91.69%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RD+YRDRDY+R  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDNYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPR--------- 240
           DYSKGRGRGRY DERR+RSRS SRSRGRSRSV+SASPGRRSPSPRRSLSPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---------RSLSPQRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVD 284
                    RSLSP+RSPSPRGESPERNG+GGRSPTPRSVSPRGQ ADSRSPSPQNSDV+
Sbjct: 241 SPQRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQSADSRSPSPQNSDVN 299

[Close]

BLAST of Lcy08g002100 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 8.6e-132
Identity = 267/281 (95.02%), Postives = 275/281 (97.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+RRSRSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSP 240
           DYSKGRGRGRY+DERRSRS SRSRSRGRSRSVDS SPGRRSPSPRRS SPRRSLSP+RSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGN-GGRSPTPRSVSPRGQPADSRSPSPQNSD 281
           SPR ESPERNGN GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Lcy08g002100 vs. NCBI nr
Match: XP_004136874.2 (serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothetical protein Csa_017162 [Cucumis sativus])

HSP 1 Score: 479.6 bits (1233), Expect = 1.9e-131
Identity = 265/281 (94.31%), Postives = 275/281 (97.86%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRHRDDYRD+DY+RRSRSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQRSP 240
           DYSKGRGRGRY+DERRSRS SRSRSRGRSRSVDS SPGRRSPSPRRS SPRRSLSP+RSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGNG-GRSPTPRSVSPRGQPADSRSPSPQNSD 281
           SPR ESPERNGNG GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Lcy08g002100 vs. NCBI nr
Match: XP_038888048.1 (serine/arginine-rich splicing factor SC35 [Benincasa hispida])

HSP 1 Score: 478.0 bits (1229), Expect = 5.6e-131
Identity = 266/286 (93.01%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRY+SRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYKSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+RRSRSRSRSRS DRSDRDRRGRE+ERER+YRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSFDRSDRDRRGREKEREREYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDER--RSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPRRSLSPQR 240
           DYSKGRGRGRY+DER  RSRSRSRSRSRGRSRSVDS SPGR+SPSPRRS SPRRSLSP+R
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSRSRSRSRGRSRSVDSGSPGRQSPSPRRSPSPRRSLSPRR 240

Query: 241 SPSPRGESPERNGN-GGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
           SPSPRG SPERNGN GGRSPT RSVSPRG+P DSRSPSPQNSDVDK
Sbjct: 241 SPSPRGGSPERNGNGGGRSPTSRSVSPRGRPTDSRSPSPQNSDVDK 286

[Close]

BLAST of Lcy08g002100 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 477.2 bits (1227), Expect = 9.5e-131
Identity = 269/295 (91.19%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+R  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSLSPR--------- 240
           DYSKGRGRGRY DERR+RSRS SRSRGRSRSV+SASPGRRSPSPRRSLSPR         
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSL 240

Query: 241 ---RSLSPQRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
              RSLSP+RSPSPRGESPERNG+GGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Lcy08g002100 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475.7 bits (1223), Expect = 2.8e-130
Identity = 268/295 (90.85%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRDRDY+R  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSP------------SPRRSL 240
           DYSKGRGRGRY DERR+RSRS SRSRGRSRSV+SASPGRRSP            SPRRSL
Sbjct: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240

Query: 241 SPRRSLSPQRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
           SP+RSLSP+RSPSPRGESPERNG+GGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Lcy08g002100 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-70
Identity = 190/314 (60.51%), Postives = 210/314 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DY++RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRS----RSRGRSRSVD 240
           R  E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S    R   RS S  
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQ 240

Query: 241 SASPGR----------RSPSPRRSLSPRRSLSPQRSPSPRGESPERNGNGGRSPTPRSVS 277
             SP R          RSPSPRRSLSPR     + SPS +  SPER  N  RSP+P S +
Sbjct: 241 KTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPA 299

[Close]

BLAST of Lcy08g002100 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-70
Identity = 190/314 (60.51%), Postives = 210/314 (66.88%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRG 180
                               RSRSPRRR RDDYR++DY++RSRSRS          DRR 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS---------YDRRE 180

Query: 181 RERERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRS----RSRGRSRSVD 240
           R  E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S    R   RS S  
Sbjct: 181 RHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQ 240

Query: 241 SASPGR----------RSPSPRRSLSPRRSLSPQRSPSPRGESPERNGNGGRSPTPRSVS 277
             SP R          RSPSPRRSLSPR     + SPS +  SPER  N  RSP+P S +
Sbjct: 241 KTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPA 299

[Close]

BLAST of Lcy08g002100 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 78.6 bits (192), Expect = 9.2e-15
Identity = 106/291 (36.43%), Postives = 135/291 (46.39%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N ++  + +  E    SR+R R R+P R
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGSRFRDRRRTPPR 156

Query: 137 RHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRP 196
            +                    S  RS   RRGR R R  DY      R   RSISPR  
Sbjct: 157 YY--------------------SRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREE 216

Query: 197 SPDYSKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSL--SPRRSLSP 256
             D  +   R    D   SR RS +  RG+SRS+        SPSPRRS+  SPRRS SP
Sbjct: 217 RYDGRRSYSRSPASD--GSRGRSLTPVRGKSRSL--------SPSPRRSISRSPRRSRSP 276

Query: 257 ----QRSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
                RS SPR  S  R+    RSP     S   +PA SRS SP     D+
Sbjct: 277 SPKRNRSVSPR-RSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDE 294

[Close]

BLAST of Lcy08g002100 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-14
Identity = 109/279 (39.07%), Postives = 134/279 (48.03%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDRDYK 136
           +DG ++ GRE+TV FA+                      R +    R R R   R RD +
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRPSPDYSKGRGRGR 196
           RR+  R  SRS  RS   RRGR R R  DY      R   RSISPR    D  +   R  
Sbjct: 157 RRTPPRYYSRS--RSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSP 216

Query: 197 YEDERRSRSRSRSRSRGRSRSVDSASPGRRSPSPRRSL--SPRRSLSP----QRSPSPRG 256
             D   SR RS +  RG+SRS+        SPSPRRS+  SPRRS SP     RS SPR 
Sbjct: 217 ASD--GSRGRSLTPVRGKSRSL--------SPSPRRSISRSPRRSRSPSPKRNRSVSPR- 276

Query: 257 ESPERNGNGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 284
            S  R+    RSP     S   +PA SRS SP     D+
Sbjct: 277 RSISRSPRRSRSPRRSRRSYTPEPARSRSQSPHGGQYDE 281

[Close]

BLAST of Lcy08g002100 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 105/278 (37.77%), Postives = 143/278 (51.44%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F ++G V DI++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKS-RYRSRSRSP 123
           +    +A +A  ++DG ++ GRE+TV FA+   N ++  + +  +   +S R++ R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RRRHRDDYRDRDYKRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 183
            R  R     R   RRSRSRSR  +   +               R +SRS+SP+      
Sbjct: 147 PRYSRSPPPRRG--RRSRSRSRGYNSPPAK--------------RHQSRSVSPQ------ 206

Query: 184 SKGRGRGRYEDERRSRSRSRSRSRGRSRSVDSASPGR---RSPSPRRSLSPR--RSLSPQ 243
                  RYE E   RS SRS     SR V S SPGR    S SPRRS+SPR  RS +P+
Sbjct: 207 -----DRRYEKE---RSYSRSPPHNGSR-VRSGSPGRVKSHSRSPRRSVSPRKNRSYTPE 261

Query: 244 RSPSPRGESPERNGNGGRSPTPRSVSPRGQPADSRSPS 276
           ++   R +SP    +  RSPTP    PRG     RSPS
Sbjct: 267 QA---RSQSPVPRQS--RSPTP---VPRGAQNGDRSPS 261

The following BLAST results are available for this feature:

BLAST of Lcy08g002100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.8e-69	60.51	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	4.9e-29	46.75	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q06A98	6.4e-29	46.09	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	1.9e-28	46.34	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	1.9e-28	46.34	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of Lcy08g002100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0I4	4.2e-132	95.02	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A0A0K7C0	9.3e-132	94.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A6J1EIV3	4.6e-131	91.19	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1CKN2	7.3e-129	92.63	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1JE82	2.8e-128	88.37	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Lcy08g002100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455209.1	8.6e-132	95.02	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]
XP_004136874.2	1.9e-131	94.31	serine/arginine-rich splicing factor SC35 [Cucumis sativus] >KGN43716.1 hypothet...	[more]
XP_038888048.1	5.6e-131	93.01	serine/arginine-rich splicing factor SC35 [Benincasa hispida]	[more]
XP_022927926.1	9.5e-131	91.19	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
KAG7022543.1	2.8e-130	90.85	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of Lcy08g002100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	2.0e-70	60.51	ortholog of human splicing factor SC35	[more]
AT5G64200.2	2.0e-70	60.51	ortholog of human splicing factor SC35	[more]
AT1G55310.3	9.2e-15	36.43	SC35-like splicing factor 33	[more]
AT1G55310.1	2.0e-14	39.07	SC35-like splicing factor 33	[more]
AT3G13570.1	1.7e-13	37.77	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0066 score: 25.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 2.1E-20 score: 72.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.058443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..103 e-value: 3.8E-27 score: 97.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..283
None	No IPR available	PANTHER	PTHR23147:SF168	SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE	coord: 1..282
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..282
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g002100.1	Lcy08g002100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding