Lcy07g016430 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g016430
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCCH domain-containing protein 24
Location	Chr07: 45144414 .. 45144944 (+)
RNA-Seq Expression	Lcy07g016430
Synteny	Lcy07g016430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCTTCGATTGAAGAAACCCTTGTAATCGAAGCCCCAAACGCTTCCGACGATCATCTCCAAGCATCGGCGGACGCCCAAGACAATACCGATAACCTCCCACAAACTACGGCGCTGCCGCCGGAATCTTTACCCGAACAATCTGATTGCCAATCAACCGAAGCTAGTGTTGCAGGGGAAAAGCGGAAGAGAACGGACCCAGATTCTGATACTGCAAATCCGAAGCCGGATCCGTCTCTGAATCCTCTTTGGAAAACCAGTTTATGCTCCTACTTTAGGCGTCATTCGGGGTCGTGTAGCCATGGAAGTGCTTGTCGCTACGCTCATGGCGAGGAGGAGCTTAGGCAACGCCCTGATAACTCGTGGGATCCTACGTCGGAGCGGGCTAAGAAGGTGATGAAAGTGGAGGAGGATGTTAAGGAAGAGGAGGTCATGATGACGGAGGCCGTTGTTGACGATGACGATGAGGACGGCAATGACGGAAGGGATAATGGGCTTAGTAAATGCTTAGTTCATTTGCCTTGA

mRNA sequence

ATGGCGGCCTCTTCGATTGAAGAAACCCTTGTAATCGAAGCCCCAAACGCTTCCGACGATCATCTCCAAGCATCGGCGGACGCCCAAGACAATACCGATAACCTCCCACAAACTACGGCGCTGCCGCCGGAATCTTTACCCGAACAATCTGATTGCCAATCAACCGAAGCTAGTGTTGCAGGGGAAAAGCGGAAGAGAACGGACCCAGATTCTGATACTGCAAATCCGAAGCCGGATCCGTCTCTGAATCCTCTTTGGAAAACCAGTTTATGCTCCTACTTTAGGCGTCATTCGGGGTCGTGTAGCCATGGAAGTGCTTGTCGCTACGCTCATGGCGAGGAGGAGCTTAGGCAACGCCCTGATAACTCGTGGGATCCTACGTCGGAGCGGGCTAAGAAGGTGATGAAAGTGGAGGAGGATGTTAAGGAAGAGGAGGTCATGATGACGGAGGCCGTTGTTGACGATGACGATGAGGACGGCAATGACGGAAGGGATAATGGGCTTAGTAAATGCTTAGTTCATTTGCCTTGA

Coding sequence (CDS)

ATGGCGGCCTCTTCGATTGAAGAAACCCTTGTAATCGAAGCCCCAAACGCTTCCGACGATCATCTCCAAGCATCGGCGGACGCCCAAGACAATACCGATAACCTCCCACAAACTACGGCGCTGCCGCCGGAATCTTTACCCGAACAATCTGATTGCCAATCAACCGAAGCTAGTGTTGCAGGGGAAAAGCGGAAGAGAACGGACCCAGATTCTGATACTGCAAATCCGAAGCCGGATCCGTCTCTGAATCCTCTTTGGAAAACCAGTTTATGCTCCTACTTTAGGCGTCATTCGGGGTCGTGTAGCCATGGAAGTGCTTGTCGCTACGCTCATGGCGAGGAGGAGCTTAGGCAACGCCCTGATAACTCGTGGGATCCTACGTCGGAGCGGGCTAAGAAGGTGATGAAAGTGGAGGAGGATGTTAAGGAAGAGGAGGTCATGATGACGGAGGCCGTTGTTGACGATGACGATGAGGACGGCAATGACGGAAGGGATAATGGGCTTAGTAAATGCTTAGTTCATTTGCCTTGA

Protein sequence

MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVAGEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRPDNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP

Homology

[Close]

BLAST of Lcy07g016430 vs. ExPASy Swiss-Prot
Match: Q8L7S3 (Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=At2g28450 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-26
Identity = 70/145 (48.28%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 44  ESLPEQSDCQSTEASVAGEKRKRTDPDSDTANPKPDPSL---NPLWKTSLCSYFRRHSGS 103
           + LP      +      GEKRKR D D  T     D  +   +P WKTSLCSYFRR + S
Sbjct: 35  DELPSSDSNATDNIEAVGEKRKRADEDEKTNLESSDTKITTPSPWWKTSLCSYFRREA-S 94

Query: 104 CSHGSACRYAHGEEELRQRPDNSWDPTSERAKKV----MKVEEDVKEEEVMMTEAVVDD- 163
           CSHG+ C+YAHGE ELR +PDN+WDPTSER KK     M   E+ +E+EV+ TE +++  
Sbjct: 95  CSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMKMSEHEEKEEDEVLFTEQMMESI 154

Query: 164 DDEDGNDGR----DNGLSKCLVHLP 177
           D ++G  G     D  LSKCLVHLP
Sbjct: 155 DGDEGGGGSVSVVDLSLSKCLVHLP 178

[Close]

BLAST of Lcy07g016430 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 69  PDSDTANPKPDPSLNP----------LWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQ 123
           P   ++NP   PSLNP           +KT +C+ FR  +G+C +G  C +AHG E+LRQ
Sbjct: 78  PQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFR--AGTCRNGELCNFAHGIEDLRQ 137

[Close]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL
Match: A0A6J1K3X1 (zinc finger CCCH domain-containing protein 24 OS=Cucurbita maxima OX=3661 GN=LOC111490955 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP E L EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAECLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD DSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL
Match: A0A6J1H2G6 (zinc finger CCCH domain-containing protein 24 OS=Cucurbita moschata OX=3662 GN=LOC111459421 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP ESL EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAESLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD DSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDN LSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNRLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL
Match: A0A0A0KDA7 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G140820 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.4e-71
Identity = 144/177 (81.36%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETL  +    SDDHLQ S DAQD+T+NLP TTAL PESL +QSD QS  ASVA
Sbjct: 1   MAASSIEETLPTQPQKTSDDHLQTSMDAQDDTENLPVTTALQPESLTDQSDLQSNGASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTDPDSD A P PDPS NPLWKTSLCSYFRRHSGSCSHG  CRYAHGEEELRQRP
Sbjct: 61  GEKRKRTDPDSDAAKPNPDPSTNPLWKTSLCSYFRRHSGSCSHGIECRYAHGEEELRQRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDED-GNDGRDNGLSKCLVHLP 177
           D SWDPTSERAKKVMKV E+VKEEEVMMTE VVDDDD++ GNDGRDN L+KCLVHLP
Sbjct: 121 DKSWDPTSERAKKVMKVGEEVKEEEVMMTEVVVDDDDDEVGNDGRDNELTKCLVHLP 177

[Close]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL
Match: A0A5D3CSW9 (Zinc finger CCCH domain-containing protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00210 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.8e-70
Identity = 142/176 (80.68%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETL+ + P  SDDHLQ S D QD+T+NL  TTA PPESLP+Q+D QS  ASVA
Sbjct: 1   MAASSIEETLLTQPPKTSDDHLQTSMDVQDDTENLTVTTAPPPESLPDQTDLQSDGASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTDPDSD A P  DPS NPLW+TSLCSYFRRHSGSCSHG+ CRYAHGEEELRQRP
Sbjct: 61  GEKRKRTDPDSDAAKPNSDPSTNPLWRTSLCSYFRRHSGSCSHGTECRYAHGEEELRQRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           D SWDPTSERAKKVMKV E+VKEEEVMMTE VV DDDE GNDGRDN LSKCLVHLP
Sbjct: 121 DKSWDPTSERAKKVMKVGEEVKEEEVMMTEVVV-DDDEVGNDGRDNELSKCLVHLP 175

[Close]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL
Match: A0A1S3CKC6 (zinc finger CCCH domain-containing protein 24 OS=Cucumis melo OX=3656 GN=LOC103501945 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.8e-70
Identity = 142/176 (80.68%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETL+ + P  SDDHLQ S D QD+T+NL  TTA PPESLP+Q+D QS  ASVA
Sbjct: 1   MAASSIEETLLTQPPKTSDDHLQTSMDVQDDTENLTVTTAPPPESLPDQTDLQSDGASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTDPDSD A P  DPS NPLW+TSLCSYFRRHSGSCSHG+ CRYAHGEEELRQRP
Sbjct: 61  GEKRKRTDPDSDAAKPNSDPSTNPLWRTSLCSYFRRHSGSCSHGTECRYAHGEEELRQRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           D SWDPTSERAKKVMKV E+VKEEEVMMTE VV DDDE GNDGRDN LSKCLVHLP
Sbjct: 121 DKSWDPTSERAKKVMKVGEEVKEEEVMMTEVVV-DDDEVGNDGRDNELSKCLVHLP 175

[Close]

BLAST of Lcy07g016430 vs. NCBI nr
Match: KAG6605546.1 (Zinc finger CCCH domain-containing protein 24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.5 bits (807), Expect = 3.0e-82
Identity = 161/176 (91.48%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP ESL EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAESLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD DSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. NCBI nr
Match: XP_022995395.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP E L EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAECLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD DSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. NCBI nr
Match: XP_023534370.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP ESL EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAESLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD D DTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDFDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. NCBI nr
Match: XP_022958090.1 (zinc finger CCCH domain-containing protein 24 [Cucurbita moschata])

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-81
Identity = 160/176 (90.91%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EA   S+DHLQ S DAQDNTDN PQT ALP ESL EQSDCQSTEASVA
Sbjct: 1   MAASSIEETLVTEALETSEDHLQTSMDAQDNTDNFPQTNALPAESLLEQSDCQSTEASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTD DSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGS CRYAHGEEELR+RP
Sbjct: 61  GEKRKRTDTDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSTCRYAHGEEELRKRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKVEE+VKEEEVMMTEAVVDDDDEDGNDGRDN LSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVEEEVKEEEVMMTEAVVDDDDEDGNDGRDNRLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. NCBI nr
Match: XP_038901963.1 (zinc finger CCCH domain-containing protein 24 [Benincasa hispida])

HSP 1 Score: 306.6 bits (784), Expect = 1.4e-79
Identity = 157/176 (89.20%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MAASSIEETLVIEAPNASDDHLQASADAQDNTDNLPQTTALPPESLPEQSDCQSTEASVA 60
           MAASSIEETLV EAP  SD HLQ S DAQDNTDN P TTALPPESLP+QSDCQS  ASVA
Sbjct: 1   MAASSIEETLVTEAPITSDAHLQTSMDAQDNTDNFPVTTALPPESLPDQSDCQSNGASVA 60

Query: 61  GEKRKRTDPDSDTANPKPDPSLNPLWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQRP 120
           GEKRKRTDPDS+T NPK DPSLNPLWKTSLCSYFRR+SGSCSHGS CRYAHGEEELRQRP
Sbjct: 61  GEKRKRTDPDSNTENPKLDPSLNPLWKTSLCSYFRRNSGSCSHGSECRYAHGEEELRQRP 120

Query: 121 DNSWDPTSERAKKVMKVEEDVKEEEVMMTEAVVDDDDEDGNDGRDNGLSKCLVHLP 177
           DNSWDPTSERAKKVMKV E+VKEEEVMMTEAVVDDD+EDGNDGRDNGLSKCLVHLP
Sbjct: 121 DNSWDPTSERAKKVMKVGEEVKEEEVMMTEAVVDDDEEDGNDGRDNGLSKCLVHLP 176

[Close]

BLAST of Lcy07g016430 vs. TAIR 10
Match: AT2G28450.1 (zinc finger (CCCH-type) family protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-27
Identity = 70/145 (48.28%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 44  ESLPEQSDCQSTEASVAGEKRKRTDPDSDTANPKPDPSL---NPLWKTSLCSYFRRHSGS 103
           + LP      +      GEKRKR D D  T     D  +   +P WKTSLCSYFRR + S
Sbjct: 35  DELPSSDSNATDNIEAVGEKRKRADEDEKTNLESSDTKITTPSPWWKTSLCSYFRREA-S 94

Query: 104 CSHGSACRYAHGEEELRQRPDNSWDPTSERAKKV----MKVEEDVKEEEVMMTEAVVDD- 163
           CSHG+ C+YAHGE ELR +PDN+WDPTSER KK     M   E+ +E+EV+ TE +++  
Sbjct: 95  CSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMKMSEHEEKEEDEVLFTEQMMESI 154

Query: 164 DDEDGNDGR----DNGLSKCLVHLP 177
           D ++G  G     D  LSKCLVHLP
Sbjct: 155 DGDEGGGGSVSVVDLSLSKCLVHLP 178

[Close]

BLAST of Lcy07g016430 vs. TAIR 10
Match: AT2G28450.2 (zinc finger (CCCH-type) family protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-27
Identity = 70/145 (48.28%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 44  ESLPEQSDCQSTEASVAGEKRKRTDPDSDTANPKPDPSL---NPLWKTSLCSYFRRHSGS 103
           + LP      +      GEKRKR D D  T     D  +   +P WKTSLCSYFRR + S
Sbjct: 35  DELPSSDSNATDNIEAVGEKRKRADEDEKTNLESSDTKITTPSPWWKTSLCSYFRREA-S 94

Query: 104 CSHGSACRYAHGEEELRQRPDNSWDPTSERAKKV----MKVEEDVKEEEVMMTEAVVDD- 163
           CSHG+ C+YAHGE ELR +PDN+WDPTSER KK     M   E+ +E+EV+ TE +++  
Sbjct: 95  CSHGNECKYAHGEAELRMKPDNTWDPTSERGKKAKAMKMSEHEEKEEDEVLFTEQMMESI 154

Query: 164 DDEDGNDGR----DNGLSKCLVHLP 177
           D ++G  G     D  LSKCLVHLP
Sbjct: 155 DGDEGGGGSVSVVDLSLSKCLVHLP 178

[Close]

BLAST of Lcy07g016430 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-05
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 69  PDSDTANPKPDPSLNP----------LWKTSLCSYFRRHSGSCSHGSACRYAHGEEELRQ 123
           P   ++NP   PSLNP           +KT +C+ FR  +G+C +G  C +AHG E+LRQ
Sbjct: 78  PQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFR--AGTCRNGELCNFAHGIEDLRQ 137

The following BLAST results are available for this feature:

BLAST of Lcy07g016430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7S3	5.4e-26	48.28	Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LT81	1.5e-04	40.63	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lcy07g016430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3X1	5.5e-82	90.91	zinc finger CCCH domain-containing protein 24 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1H2G6	1.2e-81	90.91	zinc finger CCCH domain-containing protein 24 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0KDA7	7.4e-71	81.36	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G140820 P...	[more]
A0A5D3CSW9	4.8e-70	80.68	Zinc finger CCCH domain-containing protein 24 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKC6	4.8e-70	80.68	zinc finger CCCH domain-containing protein 24 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of Lcy07g016430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605546.1	3.0e-82	91.48	Zinc finger CCCH domain-containing protein 24, partial [Cucurbita argyrosperma s...	[more]
XP_022995395.1	1.1e-81	90.91	zinc finger CCCH domain-containing protein 24 [Cucurbita maxima]	[more]
XP_023534370.1	1.5e-81	90.91	zinc finger CCCH domain-containing protein 24 [Cucurbita pepo subsp. pepo]	[more]
XP_022958090.1	2.5e-81	90.91	zinc finger CCCH domain-containing protein 24 [Cucurbita moschata]	[more]
XP_038901963.1	1.4e-79	89.20	zinc finger CCCH domain-containing protein 24 [Benincasa hispida]	[more]

BLAST of Lcy07g016430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28450.1	3.8e-27	48.28	zinc finger (CCCH-type) family protein	[more]
AT2G28450.2	3.8e-27	48.28	zinc finger (CCCH-type) family protein	[more]
AT3G19360.1	1.1e-05	40.63	Zinc finger (CCCH-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 85..113 e-value: 1.9E-4 score: 30.8
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 86..113 e-value: 1.6E-7 score: 31.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 85..114 score: 15.22499
None	No IPR available	GENE3D	4.10.1000.10		coord: 80..119 e-value: 2.8E-13 score: 51.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 84..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g016430.1	Lcy07g016430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006396	RNA processing
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008173	RNA methyltransferase activity