Lcy07g016400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g016400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA polymerase epsilon subunit C
Location	Chr07: 45120484 .. 45123058 (-)
RNA-Seq Expression	Lcy07g016400
Synteny	Lcy07g016400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACTTTAACAATGGCTTCGTCCAAAAAATCCAGTACCGAAACCAAGAGCAAAGAAGCGGGAACATCAAAATCAGCTACCAAAACCAAAACCAAAACCCACAACAACGCCAGGAAATCCGACAAGGACGATTCGAAGAAGAAGAAGAAGAAGAAAATTAGCAGCAATGAGCATGCCAACAATGGCTCCGTGAAGGACGACGACGCAGTAGCTATTTCCGCTCCAGGCTCAGCCTCCGAAGAGGACGACGCCGATGAAGACAGAGCCGAAACCACGAGTAAGAAAGCCAAAACCTCGAAATCGAAGAAAGTGAAACGGAACCATGGAAAGAAAGAACAGAATGGCTATGCAGAAGAAGAAGAAGAAGAAGTCGAGGAGAAGATTTATAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATAAATCAGGAGGCTTTGTTTCTCGTTAACAAAGCTACGGTAAGCCCTCACCACCACCACCACACTCGCGCGCAACTAAAATTGTTTGATTTTAGCTCGATTGAAGATTTAGGTATTTTCTCGTAGGTGGTTATTTGTTTCTAAAATTGATTTTTGCTGTGTCTGCAAACTTCTTAATTGTTACAGGAGATGTTTCTGGTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTATTCTCTATTCTAATGCTGCAGTCTATTATCCTTTGTTGTTATGGCGCAAAGAAAGTGTAACCTTTGTCCCATATATTATGCTCAATGCTTATTTGCATTTCTGGCATGGACTCTCACTGTTTTACACCTTCACACTTCCTGTTAGGTTTTTATCTAGAAAGAAAGTTATACCTGTAAATTATATCATAGTATATTTAAATTGCAATTATATGTTAAAAAGAGGTAAAACCTGGATCTGGCAACAGTTGAGAGGATTCCAACTCCACTAGGATATGCCCATCATAGCACAGAGGTTTAGCTTTCTATGAGCTGCAATGTTTTCAATTCATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGGTGCAAAATGAATATGGGCATGATAGTCATTTATTGAGTAGTGACAAGGAAGATGTCACGATCGAGGTCATAGTTTAATATGGGCTGTGACCTTAGATTTAGTTTACTCCAATTACTTATAGGGACTTGAATTATCAGCCTTTATCTATCGTGTTATTGTGATGGAGAATTACTCAATTGAATTATCAGTGCATTGCTTTGTGCTTTTAAAGAGTGAATTTATTTGGTGGCATGGAAATTTTAGATAAATCATTTAACAAAGCCCACATCATGTCTGGCTGGATGATTTACCAACCCAAATTATGTCTAGAGATAGACTCCCAATAAGTTTTCATATATGAGGAAGAAGAAATGGGCAGTGGAAGTAAACTAGTTCAGTCTGAATCTGATTCTTGGGAAGGGAATAAGTTACATGGGGATGGGGGCTGAAACTGTTATCAGCTTTCCTTCTCTTGGGTAACTGTAAGTTAGGTGATCGAGGAGACAGGAAAGGAGAGAATTGGAGAATAATATATTTGGGAATTTAAAATGGGAAGGCCATCATGAGTCTAGTATGAAATTTAGGAAAGAATAGTAAGACTCCTGAATCTCTTCCCTCGGTAGAAAGTGAATTCAAGTCTCTATCATCTGGCTAGGTGATTTTATGAAAACGATGCTGAAATTCTGACAAGCCTTTCGCTTCACATACTGCTTAAATATCTGCTATTGCTTCAACTTTCACTTGAAGGACTTGAAACATGTATGTGTTGAATTGCTCATTAAACGGAACAACATGCATTTGTTGTATTTCTTGTTTGCACATCATTGAATATCTATGCATGTACTGCCAACTTGAGCATAACTCAACTGGCTGAAGCATATCCTTGACCAAAAGGTCAAAGGTTCAAATCCTCACTCCCTCCCACATGCTGTTGAATAATAATAACAATTATAATAAAAGAATATCTATGCATGTTCTGTACTGTACCTTCAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCATTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAGCAGTTTCCAAAAGGAAGAGATATGACTTTCTTTCAGGTACTTCTACATGCCTCTTTCTACTCTTATTTCAAATGATGAGAAAGATGCCAGTCTCTAACTCGATAGACACCTTATAGAATATCACTATTCTTTTTGCTCTCACCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAGGCTTCTTGATATTTTAATCTGACACTTCATCTTGTTCTTTGGATGTGTTATATTTAGGCATCTCTTTTTTTATCGCGTCAATGTAATACATGGAAGTTAGAAGTTAGAACATACATTTTTCCTCCGTACAGTCATGTAGTTTATTAACGACATCTCAGATTTAACAGGAATTCTAACAAAAGTTACATAAAAA

mRNA sequence

CGAACTTTAACAATGGCTTCGTCCAAAAAATCCAGTACCGAAACCAAGAGCAAAGAAGCGGGAACATCAAAATCAGCTACCAAAACCAAAACCAAAACCCACAACAACGCCAGGAAATCCGACAAGGACGATTCGAAGAAGAAGAAGAAGAAGAAAATTAGCAGCAATGAGCATGCCAACAATGGCTCCGTGAAGGACGACGACGCAGTAGCTATTTCCGCTCCAGGCTCAGCCTCCGAAGAGGACGACGCCGATGAAGACAGAGCCGAAACCACGAGTAAGAAAGCCAAAACCTCGAAATCGAAGAAAGTGAAACGGAACCATGGAAAGAAAGAACAGAATGGCTATGCAGAAGAAGAAGAAGAAGAAGTCGAGGAGAAGATTTATAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATAAATCAGGAGGCTTTGTTTCTCGTTAACAAAGCTACGGAGATGTTTCTGGTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTATTCTCTATTCTAATGCTGCAGTCTATTATCCTTTGTTGTTATGGCGCAAAGAAAGTGTAACCTTTGTCCCATATATTATGCTCAATGCTTATTTGCATTTCTGGCATGGACTCTCACTGTTTTACACCTTCACACTTCCTGTTAGGTTTTTATCTAGAAAGAAAGTTATACCTGTAAATTATATCATAGTATATTTAAATTGCAATTATATGTTAAAAAGAGGTAAAACCTGGATCTGGCAACAGTTGAGAGGATTCCAACTCCACTAGGATATGCCCATCATAGCACAGAGGTTTAGCTTTCTATGAGCTGCAATGTTTTCAATTCATGATACAAGGGACCCAATTTCATAATGACTGTTTTCTTTCTGTATTCATGGTGCAAAATGAATATGGGCATGATAGTCATTTATTGAGTAGTGACAAGGAAGATGTCACGATCGAGGTCATAGTTTAATATGGGCTGTGACCTTAGATTTAGTTTACTCCAATTACTTATAGGGACTTGAATTATCAGCCTTTATCTATCGTGTTATTGTGATGGAGAATTACTCAATTGAATTATCAGTGCATTGCTTTGTGCTTTTAAAGAGTGAATTTATTTGGTGGCATGGAAATTTTAGATAAATCATTTAACAAAGCCCACATCATGTCTGGCTGGATGATTTACCAACCCAAATTATGTCTAGAGATAGACTCCCAATAAGTTTTCATATATGAGGAAGAAGAAATGGGCAGTGGAAGTAAACTAGTTCAGTCTGAATCTGATTCTTGGGAAGGGAATAAGTTACATGGGGATGGGGGCTGAAACTGTTATCAGCTTTCCTTCTCTTGGGTAACTGTAAGTTAGGTGATCGAGGAGACAGGAAAGGAGAGAATTGGAGAATAATATATTTGGGAATTTAAAATGGGAAGGCCATCATGAGTCTAGTATGAAATTTAGGAAAGAATAGTAAGACTCCTGAATCTCTTCCCTCGGTAGAAAGTGAATTCAAGTCTCTATCATCTGGCTAGGTGATTTTATGAAAACGATGCTGAAATTCTGACAAGCCTTTCGCTTCACATACTGCTTAAATATCTGCTATTGCTTCAACTTTCACTTGAAGGACTTGAAACATGTATGTGTTGAATTGCTCATTAAACGGAACAACATGCATTTGTTGTATTTCTTGTTTGCACATCATTGAATATCTATGCATGTACTGCCAACTTGAGCATAACTCAACTGGCTGAAGCATATCCTTGACCAAAAGGTCAAAGGTTCAAATCCTCACTCCCTCCCACATGCTGTTGAATAATAATAACAATTATAATAAAAGAATATCTATGCATGTTCTGTACTGTACCTTCAGGTATCAAAGAAGCATTGTTTTAGATGTAAGATTTTCATTGCAGCAGTAGTAAGTGTAAGACCCTTCTTTGTTGTTGCAGCATCAGCAGTTTCCAAAAGGAAGAGATATGACTTTCTTTCAGATTTTGTCCCAGAGAAATTAAAATTTGAAGATGCATTAAAGGAGAGAAGCACGGCAGAGTCTGGGAAAGACTAGGCTTCTTGATATTTTAATCTGACACTTCATCTTGTTCTTTGGATGTGTTATATTTAGGCATCTCTTTTTTTATCGCGTCAATGTAATACATGGAAGTTAGAAGTTAGAACATACATTTTTCCTCCGTACAGTCATGTAGTTTATTAACGACATCTCAGATTTAACAGGAATTCTAACAAAAGTTACATAAAAA

Coding sequence (CDS)

ATGGCTTCGTCCAAAAAATCCAGTACCGAAACCAAGAGCAAAGAAGCGGGAACATCAAAATCAGCTACCAAAACCAAAACCAAAACCCACAACAACGCCAGGAAATCCGACAAGGACGATTCGAAGAAGAAGAAGAAGAAGAAAATTAGCAGCAATGAGCATGCCAACAATGGCTCCGTGAAGGACGACGACGCAGTAGCTATTTCCGCTCCAGGCTCAGCCTCCGAAGAGGACGACGCCGATGAAGACAGAGCCGAAACCACGAGTAAGAAAGCCAAAACCTCGAAATCGAAGAAAGTGAAACGGAACCATGGAAAGAAAGAACAGAATGGCTATGCAGAAGAAGAAGAAGAAGAAGTCGAGGAGAAGATTTATAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATAAATCAGGAGGCTTTGTTTCTCGTTAACAAAGCTACGGAGATGTTTCTGGTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCAGGATCGCAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTATTCTCTATTCTAATGCTGCAGTCTATTATCCTTTGTTGTTATGGCGCAAAGAAAGTGTAACCTTTGTCCCATATATTATGCTCAATGCTTATTTGCATTTCTGGCATGGACTCTCACTGTTTTACACCTTCACACTTCCTGTTAGGTTTTTATCTAGAAAGAAAGTTATACCTGTAAATTATATCATAGTATATTTAAATTGCAATTATATGTTAAAAAGAGGTAAAACCTGGATCTGGCAACAGTTGAGAGGATTCCAACTCCACTAG

Protein sequence

MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSVKDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEEEVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLCNVSILYSNAAVYYPLLLWRKESVTFVPYIMLNAYLHFWHGLSLFYTFTLPVRFLSRKKVIPVNYIIVYLNCNYMLKRGKTWIWQQLRGFQLH

Homology

[Close]

BLAST of Lcy07g016400 vs. ExPASy Swiss-Prot
Match: A6QQ14 (DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.3e-04
Identity = 20/65 (30.77%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 123 KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAY 182
           ++ + P+ R+K +++ +       QEA+F++ +A E+F+    KDAY C  Q ++K+L  
Sbjct: 36  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 95

Query: 183 KHLCN 188
           + L N
Sbjct: 96  RDLDN 100

[Close]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL
Match: A0A5A7T1L3 (DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00250 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.4e-70
Identity = 167/206 (81.07%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MASSKKSSTE K KEAGTSK A   K KTHNNAR SDK+ SKKKKKKK  S    NNGSV
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA--PKAKTHNNARNSDKEISKKKKKKKKISIS-TNNGSV 60

Query: 61  KDDDAVAISAP-GSASEEDD-ADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEE 120
           KD++ +A+S P GSASE+DD ADED+AETTS+K KTSKSKKVKRNH K+E NGYAEEEEE
Sbjct: 61  KDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEE 120

Query: 121 EVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKK 180
           E EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNVSILYSNAAVYYPLLLW 205
           SLAYKHLCNVS+LY +A VY+PLLL+
Sbjct: 181 SLAYKHLCNVSVLYFDAPVYFPLLLY 203

[Close]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 160/195 (82.05%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKT----KTKTHNNARKSDKDDSKK-KKKKKISSNEHA 60
           MASSKKSSTE KSKEAGTSKSATKT    KTKT +NA KSDKD SKK   KKKIS+ +HA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEE 120
           NNGS +++D   ISAP SAS EDDADEDR ETTS+KA +SKSKKVKRNHGKKE+NGY EE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEE--VEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEE  VEEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLCNV 189
           QDRKKSLAYKHL +V
Sbjct: 181 QDRKKSLAYKHLSSV 195

[Close]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL
Match: A0A6J1H2H8 (DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459429 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.4e-63
Identity = 154/188 (81.91%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MAS+++SSTE KSKEAGTSK  TKTKT    NARKSDK++S KKKKKKI SN+H+NNGSV
Sbjct: 1   MASTERSSTEIKSKEAGTSKPPTKTKTL---NARKSDKNES-KKKKKKIYSNKHSNNGSV 60

Query: 61  KDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEEEV 120
           KDDDAV ISAPGSASEE+DA EDRAETTSKKAKTSKSK  K NH KKE+NGYAE+EEEEV
Sbjct: 61  KDDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEV 120

Query: 121 EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSL 180
           +EKIY FPM RIKKI RDENSD RINQEALFLVNKATEMFL+QFCKDAYACCA+DRKKSL
Sbjct: 121 QEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSL 180

Query: 181 AYKHLCNV 189
           AYKHL +V
Sbjct: 181 AYKHLSSV 184

[Close]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 155/190 (81.58%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MASSKKSSTE K KEAGTSK A   K KTHNNAR SDK+ SKKKKKKK  S    NNGSV
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA--PKAKTHNNARNSDKEISKKKKKKKKISIS-TNNGSV 60

Query: 61  KDDDAVAISAP-GSASEEDD-ADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEE 120
           KD++ +A+S P GSASE+DD ADED+AETTS+K KTSKSKKVKRNH K+E NGYAEEEEE
Sbjct: 61  KDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEE 120

Query: 121 EVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKK 180
           E EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNV 189
           SLAYKHL +V
Sbjct: 181 SLAYKHLSSV 187

[Close]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.8e-61
Identity = 154/191 (80.63%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDS-KKKKKKKISSNEHANNGS 60
           MAS+KKS+ E KSKEAGTSK ATKTKT    NARKSDK+DS KKKKKKKI SN+H+NNGS
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTKTL---NARKSDKNDSKKKKKKKKIYSNKHSNNGS 60

Query: 61  VKDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYA--EEEE 120
           VK+DDAV ISAPGSASEE+DA EDRAET SK+AKTSKSK  K NH KKE+NGYA  EEEE
Sbjct: 61  VKEDDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQEEEE 120

Query: 121 EEVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRK 180
           EE  EKIY FPM RIKKI RDENSD RINQEALFLVNKATEMFLVQFCKDAYACC++DRK
Sbjct: 121 EEAHEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLVQFCKDAYACCSRDRK 180

Query: 181 KSLAYKHLCNV 189
           KSLAYKHL +V
Sbjct: 181 KSLAYKHLSSV 188

[Close]

BLAST of Lcy07g016400 vs. NCBI nr
Match: KAA0035335.1 (DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.2e-70
Identity = 167/206 (81.07%), Postives = 181/206 (87.86%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MASSKKSSTE K KEAGTSK A   K KTHNNAR SDK+ SKKKKKKK  S    NNGSV
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA--PKAKTHNNARNSDKEISKKKKKKKKISIS-TNNGSV 60

Query: 61  KDDDAVAISAP-GSASEEDD-ADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEE 120
           KD++ +A+S P GSASE+DD ADED+AETTS+K KTSKSKKVKRNH K+E NGYAEEEEE
Sbjct: 61  KDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEE 120

Query: 121 EVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKK 180
           E EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNVSILYSNAAVYYPLLLW 205
           SLAYKHLCNVS+LY +A VY+PLLL+
Sbjct: 181 SLAYKHLCNVSVLYFDAPVYFPLLLY 203

[Close]

BLAST of Lcy07g016400 vs. NCBI nr
Match: XP_022140741.1 (DNA polymerase epsilon subunit C [Momordica charantia])

HSP 1 Score: 259.2 bits (661), Expect = 4.0e-65
Identity = 160/195 (82.05%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKT----KTKTHNNARKSDKDDSKK-KKKKKISSNEHA 60
           MASSKKSSTE KSKEAGTSKSATKT    KTKT +NA KSDKD SKK   KKKIS+ +HA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEE 120
           NNGS +++D   ISAP SAS EDDADEDR ETTS+KA +SKSKKVKRNHGKKE+NGY EE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEE--VEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEE  VEEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLCNV 189
           QDRKKSLAYKHL +V
Sbjct: 181 QDRKKSLAYKHLSSV 195

[Close]

BLAST of Lcy07g016400 vs. NCBI nr
Match: XP_022958105.1 (DNA polymerase epsilon subunit C-like [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 4.9e-63
Identity = 154/188 (81.91%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MAS+++SSTE KSKEAGTSK  TKTKT    NARKSDK++S KKKKKKI SN+H+NNGSV
Sbjct: 1   MASTERSSTEIKSKEAGTSKPPTKTKTL---NARKSDKNES-KKKKKKIYSNKHSNNGSV 60

Query: 61  KDDDAVAISAPGSASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEEEV 120
           KDDDAV ISAPGSASEE+DA EDRAETTSKKAKTSKSK  K NH KKE+NGYAE+EEEEV
Sbjct: 61  KDDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEV 120

Query: 121 EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSL 180
           +EKIY FPM RIKKI RDENSD RINQEALFLVNKATEMFL+QFCKDAYACCA+DRKKSL
Sbjct: 121 QEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAYACCARDRKKSL 180

Query: 181 AYKHLCNV 189
           AYKHL +V
Sbjct: 181 AYKHLSSV 184

[Close]

BLAST of Lcy07g016400 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-62
Identity = 159/192 (82.81%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDS--KKKKKKKISSNEHANNG 60
           MASSKKSSTE KSKEAGTSK     KTKTHNNARKSDKDDS  KKKKKKKIS+     NG
Sbjct: 44  MASSKKSSTEAKSKEAGTSKPT--PKTKTHNNARKSDKDDSNKKKKKKKKIST----ING 103

Query: 61  SVKDDDAVAISAPG--SASEEDDADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEE 120
           SVKD++A+A S PG  SASEE DADEDRAETTS K  TSKSKKV+RNH KKE+NGYA EE
Sbjct: 104 SVKDNEALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEE 163

Query: 121 EEEVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDR 180
           EEE EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDR
Sbjct: 164 EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDR 223

Query: 181 KKSLAYKHLCNV 189
           KKSLAYKHL +V
Sbjct: 224 KKSLAYKHLSSV 229

[Close]

BLAST of Lcy07g016400 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 5.4e-62
Identity = 155/190 (81.58%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 1   MASSKKSSTETKSKEAGTSKSATKTKTKTHNNARKSDKDDSKKKKKKKISSNEHANNGSV 60
           MASSKKSSTE K KEAGTSK A   K KTHNNAR SDK+ SKKKKKKK  S    NNGSV
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA--PKAKTHNNARNSDKEISKKKKKKKKISIS-TNNGSV 60

Query: 61  KDDDAVAISAP-GSASEEDD-ADEDRAETTSKKAKTSKSKKVKRNHGKKEQNGYAEEEEE 120
           KD++ +A+S P GSASE+DD ADED+AETTS+K KTSKSKKVKRNH K+E NGYAEEEEE
Sbjct: 61  KDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEE 120

Query: 121 EVEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKK 180
           E EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCAQDRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLCNV 189
           SLAYKHL +V
Sbjct: 181 SLAYKHLSSV 187

[Close]

BLAST of Lcy07g016400 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-08
Identity = 57/166 (34.34%), Postives = 84/166 (50.60%), Query Frame = 0


Query: 28  KTHNNARKSDKDDSKKKKKKKISSNEHANNGSVKDDDAVAISAPGSASEEDDADEDRAET 87
           K      +SD   +K   + K SS       S K +           SE   +D      
Sbjct: 6   KPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEEAI 65

Query: 88  TSKKAKTSKSKKVKRNHGKK-----EQNGYAEEEEEEVEEKIYKFPMHRIKKIMRDENSD 147
              +AK S     KR +GK      + +   EE++   E+   KFPM+RI++IMR +NS 
Sbjct: 66  RGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAKIKFPMNRIRRIMRSDNSA 125

Query: 148 LRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLCNV 189
            +I Q+A+FLVNKATEMF+ +F ++AY    +D+KK + YKHL +V
Sbjct: 126 PQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSV 171

The following BLAST results are available for this feature:

BLAST of Lcy07g016400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6QQ14	5.3e-04	30.77	DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1	[more]

BLAST of Lcy07g016400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1L3	4.4e-70	81.07	DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CGZ0	1.9e-65	82.05	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A6J1H2H8	2.4e-63	81.91	DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A1S3CKU7	2.6e-62	81.58	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1K264	3.8e-61	80.63	transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 ...	[more]

BLAST of Lcy07g016400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035335.1	9.2e-70	81.07	DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA poly...	[more]
XP_022140741.1	4.0e-65	82.05	DNA polymerase epsilon subunit C [Momordica charantia]	[more]
XP_022958105.1	4.9e-63	81.91	DNA polymerase epsilon subunit C-like [Cucurbita moschata]	[more]
XP_038902902.1	1.1e-62	82.81	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_008463933.1	5.4e-62	81.58	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]

BLAST of Lcy07g016400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	2.8e-08	34.34	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 83..193 e-value: 6.4E-17 score: 63.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 92..187
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 126..186 e-value: 4.5E-16 score: 58.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..46
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 11..187
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 11..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g016400.1	Lcy07g016400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity