Lcy07g016380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g016380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein transport protein Sec61 subunit beta
Location	Chr07: 45113874 .. 45114904 (+)
RNA-Seq Expression	Lcy07g016380
Synteny	Lcy07g016380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGAAGATTTCAGATTTTATAAGATAAGATCTAAACCTCTTTTTTTAATCAAAATAATTGGAATTAAAATAAACACAATGATCCTAACCTGCCTGCAATTTACGAAAGTACCCCCGATGTAAGGCGTTGGTTTGCCAATTCATTTTCACTATTGTTCCTTGGTCACTGAAGCTTCTGGTTTTTCCATTTTCCTTTTCTAATTTTCCACCGTTCTGTTCTCTCAAATTCACCTAATTCCGATCGTCTTCTCCGATTCTCAATCTATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGGCCCGGCGTCGTGGCCCCGCGCGGCTCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCACTTCCGCCGCCGGCTCTACTGGACTTGTTGCCGGCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTCATGAGCCTCTGCTTCATCGGATTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAATCCTGTGTCTTTTTAGTCCGGATCTTTTCATTCCCTAGATGAAATGGCTAGGTTTCGCTCTTGAACTGATGATATAACGCTTTGTTTTCGGCTTTTGCTCTGTAAATTTAACAATCGTTGTAGTTCCTTGAGGTTTCAATTTGATCAGCTGTGGACGAATTAAAAGGAACGAGATAGTTCTTTTGCTGATATTGTCTCTTTAGTGATCTAGTTCTTGTGAGTAATGCGAATTGCCCGTTTTCCCTTTTTTTTTTCGGTCTGTATATGGTGTTTACAAGCGATGAATATTAGCTGTTTCTTCTAGGTTTTATTTTGTATGAGTGGAGGTTCTTTATCTGGGCTCTTCTTATTAGCAATTGCGCATAAATTATGGATTATGTACCTTTTCTGATTGATACTCACACATTAGATTCGTTTTCTAAAGTTGAAGTTTGGTTTTGTT

mRNA sequence

AACTGAAGATTTCAGATTTTATAAGATAAGATCTAAACCTCTTTTTTTAATCAAAATAATTGGAATTAAAATAAACACAATGATCCTAACCTGCCTGCAATTTACGAAAGTACCCCCGATGTAAGGCGTTGGTTTGCCAATTCATTTTCACTATTGTTCCTTGGTCACTGAAGCTTCTGGTTTTTCCATTTTCCTTTTCTAATTTTCCACCGTTCTGTTCTCTCAAATTCACCTAATTCCGATCGTCTTCTCCGATTCTCAATCTATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGGCCCGGCGTCGTGGCCCCGCGCGGCTCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCACTTCCGCCGCCGGCTCTACTGGACTTGTTGCCGGCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTCATGAGCCTCTGCTTCATCGGATTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAATCCTGTGTCTTTTTAGTCCGGATCTTTTCATTCCCTAGATGAAATGGCTAGGTTTCGCTCTTGAACTGATGATATAACGCTTTGTTTTCGGCTTTTGCTCTGTAAATTTAACAATCGTTGTAGTTCCTTGAGGTTTCAATTTGATCAGCTGTGGACGAATTAAAAGGAACGAGATAGTTCTTTTGCTGATATTGTCTCTTTAGTGATCTAGTTCTTGTGAGTAATGCGAATTGCCCGTTTTCCCTTTTTTTTTTCGGTCTGTATATGGTGTTTACAAGCGATGAATATTAGCTGTTTCTTCTAGGTTTTATTTTGTATGAGTGGAGGTTCTTTATCTGGGCTCTTCTTATTAGCAATTGCGCATAAATTATGGATTATGTACCTTTTCTGATTGATACTCACACATTAGATTCGTTTTCTAAAGTTGAAGTTTGGTTTTGTT

Coding sequence (CDS)

ATGGCCAGAGGCACTTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGGCCCGGCGTCGTGGCCCCGCGCGGCTCCGCGGCGGCGACGGCCGGCCTCCGCCGTCGCCGTCTCGGCTCCACTTCCGCCGCCGGCTCTACTGGACTTGTTGCCGGCGGATCAAGCGGCGGCGGCAACATGCTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTCATGAGCCTCTGCTTCATCGGATTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTTTAA

Protein sequence

MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV

Homology

[Close]

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG      GG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-07
Identity = 41/97 (42.27%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 1  MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
          MA   SQ+ +  +   R    AP G+A A   LRRR +  +  +G+T             
Sbjct: 1  MAGSQSQASTLVARGGRSSSNAPTGAAGA---LRRRPVRGSGGSGTTKAQQAA------- 60

Query: 61 LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGK 98
          + FYTDD PG K+SP VV+ MSL FI FVT LHV GK
Sbjct: 61 MNFYTDDTPGWKMSPVVVITMSLSFIAFVTILHVVGK 87

[Close]

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T +AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T +AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 39/97 (40.21%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 5   TSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNMLRFY 64
           T    +  SS   P       +A +T   R+     T +AG T      S+G G M RFY
Sbjct: 5   TPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRT-----TSAGTGGMWRFY 64

Query: 65  TDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA 102
           T+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Sbjct: 65  TEDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

[Close]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.2e-45
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTS AG+TGLV+GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.2e-45
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTS AG+TGLV+GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL
Match: A0A6J1CGL0 (Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=LOC111011042 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST +AGS G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-41
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ STGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  STGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Lcy07g016380 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTS AG+TGLV+GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Lcy07g016380 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 3.7e-43
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARG SQSQS SSSTSRPGVVAPRGSAAATAGLRRRR GSTSAA STGLV GGSSGGGNM
Sbjct: 1   MARGVSQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPGSTSAAASTGLVGGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Lcy07g016380 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 3.4e-41
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGGNM 60
           MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST +AGS G+V  GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of Lcy07g016380 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ STGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Lcy07g016380 vs. NCBI nr
Match: XP_008463929.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0035333.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK14304.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.3e-40
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MARGTSQSQSASS--STSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGGG 60
           MARG SQSQS++S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  STGLV GGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Lcy07g016380 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 131.0 bits (328), Expect = 5.9e-31
Identity = 77/108 (71.30%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MARGTSQSQ---SASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG 60
           MARG+SQSQ   S  SST+RPG+ APRGSAAATAG+RRRRLG      S G  +G  SG 
Sbjct: 1   MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSSGG-GSGVGSGS 60

Query: 61  GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAA 106
            NMLRFYTDDAPGLKISPTVVL+MSLCFIGFVT LHVFGKLY  +S +
Sbjct: 61  SNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]

BLAST of Lcy07g016380 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG      GG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Lcy07g016380 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG      GG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Lcy07g016380 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG      GG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Lcy07g016380 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRLGSTSAAGSTGLVAGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG      GG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  SLCFIGFVTGLHVFGKLY 100
           S+ FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

The following BLAST results are available for this feature:

BLAST of Lcy07g016380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	1.2e-15	66.67	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
A8I6P9	7.5e-07	42.27	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
P60467	1.7e-06	40.21	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
P60468	1.7e-06	40.21	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]
Q9CQS8	1.7e-06	40.21	Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b ...	[more]

BLAST of Lcy07g016380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ65	7.2e-45	96.26	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	7.2e-45	96.26	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CGL0	1.7e-41	91.59	Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KHR1	4.9e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	6.3e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Lcy07g016380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958107.1	1.5e-44	96.26	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_038902812.1	3.7e-43	95.33	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_022140347.1	3.4e-41	91.59	protein transport protein Sec61 subunit beta [Momordica charantia]	[more]
XP_004149541.1	1.0e-40	90.83	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]
XP_008463929.1	1.3e-40	90.83	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA00353...	[more]

BLAST of Lcy07g016380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	5.9e-31	71.30	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 6..104 e-value: 1.6E-26 score: 90.5
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..104
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 58..96 e-value: 1.1E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g016380.1	Lcy07g016380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005784	Sec61 translocon complex