Lcy07g001400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g001400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Chr07: 3572420 .. 3572821 (+)
RNA-Seq Expression	Lcy07g001400
Synteny	Lcy07g001400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG

mRNA sequence

ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG

Coding sequence (CDS)

ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG

Protein sequence

MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLILANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIFCEEAVHCLRLLTD

Homology

[Close]

BLAST of Lcy07g001400 vs. ExPASy TrEMBL
Match: A0A6J1DW95 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC111024077 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 112/124 (90.32%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHIVRS+AKRYHHL MVVRCKTTSSQYVASRARDPTFEKLMDKYKN  KVVAVQDLIL
Sbjct: 1   MGPHIVRSIAKRYHHLSMVVRCKTTSSQYVASRARDPTFEKLMDKYKNFLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKSQPFC+LTD A  IF
Sbjct: 61  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSQPFCRLTDAATLIF 120

Query: 121 CEEA 125
            EEA
Sbjct: 121 HEEA 124

[Close]

BLAST of Lcy07g001400 vs. ExPASy TrEMBL
Match: A0A6J1H9C9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111461311 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS+ KRY +L+MVVRCKTTSSQYVASRARDPTFEKLMD+YKNL KVVAVQDLIL
Sbjct: 1   MGPHIFRSIPKRYQYLNMVVRCKTTSSQYVASRARDPTFEKLMDRYKNLLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SLEFLSRLSQKLHLNR A SFLRKYPHIFHIFYDPNK+QPFCKLTDTAI I 
Sbjct: 61  ANPRNQSVSLEFLSRLSQKLHLNRGAASFLRKYPHIFHIFYDPNKTQPFCKLTDTAIHIV 120

Query: 121 CEEA 125
           CEEA
Sbjct: 121 CEEA 124

[Close]

BLAST of Lcy07g001400 vs. ExPASy TrEMBL
Match: A0A0A0LWZ0 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600890 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS+A+RYHHL+M VRCK TSSQYVASRARDPTFEKLMDKYK+  KVVA+QDLIL
Sbjct: 1   MGPHIFRSIAERYHHLNMFVRCKVTSSQYVASRARDPTFEKLMDKYKDFLKVVAIQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKS PFCKLTDTA QIF
Sbjct: 61  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSLPFCKLTDTANQIF 120

Query: 121 CEEA 125
            EEA
Sbjct: 121 SEEA 124

[Close]

BLAST of Lcy07g001400 vs. ExPASy TrEMBL
Match: A0A6J1JGE7 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111485476 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.8e-54
Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGP I RS+ KRYH+L+M VRCKTTSSQYVASRARDPTFEKLMD+YKNL KVVAVQDLIL
Sbjct: 1   MGPQIFRSIPKRYHYLNMFVRCKTTSSQYVASRARDPTFEKLMDRYKNLLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SLEFL RLSQKLHLNR A SFLRKYPHIFHIFYDPNK+QPFCKLTDTAI I 
Sbjct: 61  ANPRNQSVSLEFLLRLSQKLHLNRGAASFLRKYPHIFHIFYDPNKTQPFCKLTDTAIHIV 120

Query: 121 CEEA 125
           CEEA
Sbjct: 121 CEEA 124

[Close]

BLAST of Lcy07g001400 vs. ExPASy TrEMBL
Match: A0A1S3BQP0 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103492459 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 107/124 (86.29%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS+ +RY HL+M VRCK TSSQYVASRARDPTFEKLMDKYKN  KVVA+QDLIL
Sbjct: 1   MGPHIFRSIGERYLHLNMFVRCKVTSSQYVASRARDPTFEKLMDKYKNFLKVVAIQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKS PFCKLTDTA QIF
Sbjct: 61  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSLPFCKLTDTANQIF 120

Query: 121 CEEA 125
            EEA
Sbjct: 121 SEEA 124

[Close]

BLAST of Lcy07g001400 vs. NCBI nr
Match: XP_038879589.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038879590.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 231.1 bits (588), Expect = 5.6e-57
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RSLAKRYHHL+MVVRCKTTSSQYVASRARDPTFEKLMDKYKNL KVVA+QDLIL
Sbjct: 10  MGPHIFRSLAKRYHHLNMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLLKVVAIQDLIL 69

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKS PFCKLTDTA Q+F
Sbjct: 70  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSLPFCKLTDTANQLF 129

Query: 121 CEEA 125
            EEA
Sbjct: 130 SEEA 133

[Close]

BLAST of Lcy07g001400 vs. NCBI nr
Match: XP_023516230.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.6e-56
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS++KRYH+L+MVVRCKTTSSQYVASRARDPTFEKLMD+YKNL KVVAVQDLIL
Sbjct: 1   MGPHIFRSISKRYHYLNMVVRCKTTSSQYVASRARDPTFEKLMDRYKNLLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SLEFLSRLSQKLHLNR A SFLRKYPHIFHIFYDPNK+QPFCKLTDTAI I 
Sbjct: 61  ANPRNQSVSLEFLSRLSQKLHLNRGAASFLRKYPHIFHIFYDPNKTQPFCKLTDTAIHIV 120

Query: 121 CEEA 125
           CEEA
Sbjct: 121 CEEA 124

[Close]

BLAST of Lcy07g001400 vs. NCBI nr
Match: XP_022157354.1 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.7e-56
Identity = 112/124 (90.32%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHIVRS+AKRYHHL MVVRCKTTSSQYVASRARDPTFEKLMDKYKN  KVVAVQDLIL
Sbjct: 1   MGPHIVRSIAKRYHHLSMVVRCKTTSSQYVASRARDPTFEKLMDKYKNFLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKSQPFC+LTD A  IF
Sbjct: 61  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSQPFCRLTDAATLIF 120

Query: 121 CEEA 125
            EEA
Sbjct: 121 HEEA 124

[Close]

BLAST of Lcy07g001400 vs. NCBI nr
Match: XP_022960573.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata] >XP_022960574.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata])

HSP 1 Score: 224.6 bits (571), Expect = 5.2e-55
Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS+ KRY +L+MVVRCKTTSSQYVASRARDPTFEKLMD+YKNL KVVAVQDLIL
Sbjct: 1   MGPHIFRSIPKRYQYLNMVVRCKTTSSQYVASRARDPTFEKLMDRYKNLLKVVAVQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SLEFLSRLSQKLHLNR A SFLRKYPHIFHIFYDPNK+QPFCKLTDTAI I 
Sbjct: 61  ANPRNQSVSLEFLSRLSQKLHLNRGAASFLRKYPHIFHIFYDPNKTQPFCKLTDTAIHIV 120

Query: 121 CEEA 125
           CEEA
Sbjct: 121 CEEA 124

[Close]

BLAST of Lcy07g001400 vs. NCBI nr
Match: XP_011660083.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN66400.1 hypothetical protein Csa_006877 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54
Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLIL 60
           MGPHI RS+A+RYHHL+M VRCK TSSQYVASRARDPTFEKLMDKYK+  KVVA+QDLIL
Sbjct: 1   MGPHIFRSIAERYHHLNMFVRCKVTSSQYVASRARDPTFEKLMDKYKDFLKVVAIQDLIL 60

Query: 61  ANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIF 120
           ANPRNQS SL+FLSRLSQKLHLNR APSFLRKYPHIFHIFYDPNKS PFCKLTDTA QIF
Sbjct: 61  ANPRNQSVSLDFLSRLSQKLHLNRGAPSFLRKYPHIFHIFYDPNKSLPFCKLTDTANQIF 120

Query: 121 CEEA 125
            EEA
Sbjct: 121 SEEA 124

[Close]

BLAST of Lcy07g001400 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-38
Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 20  VRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLILANPRNQ--SASLEFLSRLS 79
           VR  TTS+QYVASR+RDP FEKLMDKYKNL KV+A+QDL LANP     S S+EFLSRLS
Sbjct: 21  VRSTTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLS 80

Query: 80  QKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIFCEEAV 126
           QKLHLNR A SFLRKYPHIFH+ YDP K++PFC+LTD A++I  +EA+
Sbjct: 81  QKLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEAL 128

The following BLAST results are available for this feature:

BLAST of Lcy07g001400 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW95	2.3e-56	90.32	LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia ...	[more]
A0A6J1H9C9	2.5e-55	88.71	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11146131...	[more]
A0A0A0LWZ0	1.3e-54	87.10	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600890 PE=4 S...	[more]
A0A6J1JGE7	4.8e-54	87.10	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111485476 ...	[more]
A0A1S3BQP0	1.8e-53	86.29	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103492459 PE=4...	[more]

BLAST of Lcy07g001400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879589.1	5.6e-57	91.13	protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038879590.1 protein ...	[more]
XP_023516230.1	3.6e-56	89.52	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022157354.1	4.7e-56	90.32	LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]	[more]
XP_022960573.1	5.2e-55	88.71	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata] >XP_022960574.1 protein...	[more]
XP_011660083.1	2.6e-54	87.10	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN66400.1 hypothetical p...	[more]

BLAST of Lcy07g001400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06440.1	3.6e-38	71.30	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 35..124 e-value: 2.5E-21 score: 76.0
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 6..124
None	No IPR available	PANTHER	PTHR31476:SF15	OS04G0618900 PROTEIN	coord: 6..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g001400.1	Lcy07g001400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding