Lcy06g020010 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g020010
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr06: 44746214 .. 44748786 (-)
RNA-Seq Expression	Lcy06g020010
Synteny	Lcy06g020010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGAATGTAACTTAATTACTTTTTGTTTATTATACTTTATCTAGTTAAATTATGGTCAGATACCTCTTCATGCACGTTTGGAATACATTTCAATTTAAATATTTTTCAAAAATGCATTTTTTAAAAAACATTTTATATAAAAATTGTTTAGAATTTAAACACTCATATGTTCTGGTTGCATTTTCTCACAAGTGTTTTTATACACAAGCTATTGTATACTTAAAAGTCTTTTAAAAAAATTGGTTTCAAGTGTTTCTCTCAAAATAGTTTATTTATCAATCTCATTTTCTAATAAGTCATTTTTAGTGCTTGCCAAACATTATAAATTTTTTCAAAATGATTTTTTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACCCTTAATGGACAATTTAACTAATTTATTGAATATATTATACTTTAAAAAAAAAAATCACATGTTACGTGTAGTATAATTTCTCATATTATTATTTTTAACGCCGTATTTAAATATATGGGGTCGTTTGGTGCGCCGGAATTGAATGGGTTTGGAATGGAATGGAATGGAATCTGATGCCCATGTGAATATTTTGCTGGAATCATGATTCCCATGCCTGTGTTTGGTGCATTGGATTTGGGTTGGAATTAATGAAAAGAAAAATAGTGAGACCCACCAAAATTATAAGGAAAATAGAAAAAGAAATGGTGGGTCCCATCAAAATTATGAAGAAAAATTGAGAGAGAAATAGTGGGACCCACCAAAATGTGGTTAAAATAGAAAAAGAAATGGTGGGTCCCATCAAAATTATGAAGAAAAATGGAGAGAGAAATAGTGGGACCTACCAAAATGTGGGAATGGATTGGAATCCACATGCCCACCATTTCATTCCAAACCCACACCATTCCCGGCCAACCAAACATGGGCATCTCTTTCCAATCCATTCCAACCAATTCCAAACCCGTGGGCCAAACGACCCCGATATGTTTAATCTAAAACAAGTAAGAATTACTAAGGGCCCGTTTGGTACAAGGTTTTTGGAGATGGGAATGGGCAAGGGTTTCTAATACCCTTGTTTGTTTCAAGATTTCTGTGGTGGGTCCAGGAAATAACGCATTCCCAGGCATCATTTATGCCCATAAGCAAGGGTTTTCTATGCCCTTACAAAAGCATGGGTTTTCTCTTTTCCCATCTCTTTTTTTTTTTTATTTTTATATGCAATTTTATTTTGAATATAGTTAATTAATTAACTAATGGATACTAAATTAAAAATAATATAATAAATTATTTAATTAGATTAAATAATAATTTGTCAAGAATTTCATTTTTTTTAAACAAATACTTTTTTCTAGGACTTTTAAACAAATACTTAGTCCAAGTTTATTAAAGGGATGTAATTACATATTTACTAAAATTATAATTAACTAGTCAATATTATCGAAAATATATTTAATTATTGAATTAAAATCATTTAAATGAATTTAGTATAAAAATTCATTTTTCAATAATTATAATTAATTACTTATCGATTATTTATAATCAATTAATTACTTTTTTAAATTTCCTTATAATAAATAAATAATCATATTATTATTAAATATTTATCTAATTAATTTTTATGGATACAATATATTAAATTATTGTAGTTAAAGATATTTATTAAAAAATTAATTAAATAATTTTAGTTTGTTAAATTAACATAGTTTATCCCATTAAAATCATTTCATGATTATTATTTCATTAATTTTTATTAATAGTTTGAATTAATTTTGATTATTTTATTGATTAATTTATTAAAATTACATAAAGTATACCTGATTAATTCTAAAAAATAAATACAGACATAATTTGTTCTCATAAAATCCTGATGACATTCTCATGCACAACCAAACACAGTTATCTTTGATTCCCAGCAATCTTATTCCCAGGCATAGTATTTCCAGACATCATGTATTCCCAGGCATCTATAAAACCTTAAACCAAACGGACCCTAAAGGTTAAGAAAAAAAGTAAATACAAATTTTTGTCTATTAACTATTATGATTTTGACTGCGACTATATATATATATATATATATATATTTGAAAACCAACCATCAATATATATATATATATATATATTTGAAAACCAACCATCATATTTTGTTCGGTCTGCGGAGAGAGAACCACCTGAGTCAAGGAGCCGGAATCCACCGCCACTCTGCTGCTGGAAGCTCAATTCCGATGCTTCGTGGAACATCAAGGATGAGCGGAGTGGGTTAGGCTGGATTGTTCGTGACTCCGACAGGTCTCCCGTCTGTGCAGACATTGTTTCGAGTAAAAATCTGTGGCCGACGAAAGCTTTGGAAGCAAAAGCTATGTGGGAGGGTTTGAAAAGCTTACAATTGCTCAATTTTTTGTCGCAGATGATTGAAGTTGAATCCGATTGCCTTGAATTGATCGATAATTTGAATTCCGGTGAAGAAGACCTTTCGGATTCCAAAGTCTTTGTGGAAGCCATTCTTGATTTGGCTCAATCCTTGGGGGTGCTCCACTTCAAGCACTGCCCGAGGTCACAAAACGGAGCTGCTCACGCTCTTGCTTGA

mRNA sequence

ATGGAAAAGAATAGAGAACCACCTGAGTCAAGGAGCCGGAATCCACCGCCACTCTGCTGCTGGAAGCTCAATTCCGATGCTTCGTGGAACATCAAGGATGAGCGGAGTGGGTTAGGCTGGATTGTTCGTGACTCCGACAGGTCTCCCGTCTGTGCAGACATTGTTTCGAGTAAAAATCTGTGGCCGACGAAAGCTTTGGAAGCAAAAGCTATGTGGGAGGGTTTGAAAAGCTTACAATTGCTCAATTTTTTGTCGCAGATGATTGAAGTTGAATCCGATTGCCTTGAATTGATCGATAATTTGAATTCCGGTGAAGAAGACCTTTCGGATTCCAAAGTCTTTGTGGAAGCCATTCTTGATTTGGCTCAATCCTTGGGGGTGCTCCACTTCAAGCACTGCCCGAGGTCACAAAACGGAGCTGCTCACGCTCTTGCTTGA

Coding sequence (CDS)

ATGGAAAAGAATAGAGAACCACCTGAGTCAAGGAGCCGGAATCCACCGCCACTCTGCTGCTGGAAGCTCAATTCCGATGCTTCGTGGAACATCAAGGATGAGCGGAGTGGGTTAGGCTGGATTGTTCGTGACTCCGACAGGTCTCCCGTCTGTGCAGACATTGTTTCGAGTAAAAATCTGTGGCCGACGAAAGCTTTGGAAGCAAAAGCTATGTGGGAGGGTTTGAAAAGCTTACAATTGCTCAATTTTTTGTCGCAGATGATTGAAGTTGAATCCGATTGCCTTGAATTGATCGATAATTTGAATTCCGGTGAAGAAGACCTTTCGGATTCCAAAGTCTTTGTGGAAGCCATTCTTGATTTGGCTCAATCCTTGGGGGTGCTCCACTTCAAGCACTGCCCGAGGTCACAAAACGGAGCTGCTCACGCTCTTGCTTGA

Protein sequence

MEKNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPRSQNGAAHALA

Homology

[Close]

BLAST of Lcy06g020010 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.2e-11
Identity = 51/143 (35.66%), Postives = 73/143 (51.05%), Query Frame = 0


Query: 3   KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWP 62
           +++  P +    PP    WKLN DA+W       GLGWIVRDS+   + A+ +  K L  
Sbjct: 68  EDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECL--KALSQ 127

Query: 63  TKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLA 122
           +  LEA     G+K           IE+ESDCLE+++ +N     L++  + VE I    
Sbjct: 128 SLTLEA-----GIK-----------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEM 187

Query: 123 QSLGVLHFKHCPRSQNGAAHALA 146
           +SL +  FKH P   NG AH +A
Sbjct: 188 ESLPIEGFKHLPMKANGVAHGIA 192

[Close]

BLAST of Lcy06g020010 vs. ExPASy TrEMBL
Match: A0A803L9N8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 5   REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVS 64
           REP  S  R+        PP    +KLN+DAS + KD R GLG +VRD+    +     S
Sbjct: 111 REPTTSIERSSEVTGLWIPPTSSRYKLNTDASIS-KDRRGGLGMVVRDNIGDVMMTWGKS 170

Query: 65  SKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVE 124
                    +EA A+  G++++    F  + +EV SDCL++I+ LN  + + S +++ V 
Sbjct: 171 LNGTGIISEIEAVALLFGMRAVFDAGF--RKLEVSSDCLQVIELLNGSKHENSPTQLIVT 230

Query: 125 AILDLAQSLGVLHFKHCPRSQNGAAHALA 146
            IL  A S   + F  CPR  N  AH++A
Sbjct: 231 DILSFAYSFDFVCFSFCPRLCNKVAHSMA 256

[Close]

BLAST of Lcy06g020010 vs. ExPASy TrEMBL
Match: A0A7J6H9K5 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_030772 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-08
Identity = 46/131 (35.11%), Postives = 62/131 (47.33%), Query Frame = 0


Query: 15  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEG 74
           PPP+   KLN DA+ +    ++G G IVRD     + A   S       KA E   +WEG
Sbjct: 38  PPPVGTLKLNVDAAVSSHQNKTGGGVIVRDHTGKVIAATAFSRVGQMQPKAAEGWVLWEG 97

Query: 75  LKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCP 134
           LK  +        IEV  DC  L+ +L S +++LS     + AI  +  SL  +   H  
Sbjct: 98  LKWSRDNGLNIDHIEV--DCKNLLTDLQSTDDNLSSYGTIINAIRRMLSSLPTVTLHHTR 157

Query: 135 RSQNGAAHALA 146
           R  N AAH LA
Sbjct: 158 RQGNTAAHNLA 166

[Close]

BLAST of Lcy06g020010 vs. ExPASy TrEMBL
Match: A0A803P8R6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.6e-08
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 0


Query: 16  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEGL 75
           PP  C KLN+DA+ +I+ + SG G +VR+S    V    +  K  +  + +EA A+   L
Sbjct: 213 PPSGCLKLNTDATIDIRKQVSGFGAVVRNSLGDIVATTSILFKGCFKPEIMEALALMHSL 272

Query: 76  KSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCPR 135
           + LQ LN    +I  E+D L ++  L+S ++ +SD    +  I  L       H  H  R
Sbjct: 273 QCLQDLNLHVHLI--ETDSLLVVKGLDSLQQHVSDFHCLLNNISLLVSKFPGAHISHVFR 332

Query: 136 SQNGAAHALA 146
           S N AAH LA
Sbjct: 333 SANTAAHLLA 340

[Close]

BLAST of Lcy06g020010 vs. ExPASy TrEMBL
Match: A0A7J6F7X7 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_013892 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 45/131 (34.35%), Postives = 61/131 (46.56%), Query Frame = 0


Query: 15  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWEG 74
           PPP+   KLN D + +    ++G G IVRD     + A   S       KA E   +WEG
Sbjct: 74  PPPVGTLKLNVDVAVSSHQNKTGGGVIVRDHTGKVIAATAFSRVGQMQPKAAEGWVLWEG 133

Query: 75  LKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCP 134
           LK  +        IEV  DC  L+ +L S +++LS     + AI  +  SL  +   H  
Sbjct: 134 LKWSRDNGLNIDHIEV--DCKNLLTDLQSTDDNLSSYGTIINAIRRMLSSLPTVTLHHTR 193

Query: 135 RSQNGAAHALA 146
           R  N AAH LA
Sbjct: 194 RQGNTAAHNLA 202

[Close]

BLAST of Lcy06g020010 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-11
Identity = 51/143 (35.66%), Postives = 73/143 (51.05%), Query Frame = 0


Query: 3   KNREPPESRSRNPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWP 62
           +++  P +    PP    WKLN DA+W       GLGWIVRDS+   + A+ +  K L  
Sbjct: 68  EDKNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECL--KALSQ 127

Query: 63  TKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLA 122
           +  LEA     G+K           IE+ESDCLE+++ +N     L++  + VE I    
Sbjct: 128 SLTLEA-----GIK-----------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEM 187

Query: 123 QSLGVLHFKHCPRSQNGAAHALA 146
           +SL +  FKH P   NG AH +A
Sbjct: 188 ESLPIEGFKHLPMKANGVAHGIA 192

[Close]

BLAST of Lcy06g020010 vs. NCBI nr
Match: XP_015388332.1 (uncharacterized protein LOC107178077 [Citrus sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 14  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWE 73
           NPPP   +K+N DA+ N+KD+ +GLG I+R+S+   V A +  S     +  +EA+A+  
Sbjct: 79  NPPPCGWFKINVDAAVNVKDQIAGLGVIIRNSNGEVVAAAVQQSCFQLSSTHMEAEAVIL 138

Query: 74  GLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHC 133
           G+KS Q   F S MI +E+D  E++D   S +  ++++   +  I +  QS      ++ 
Sbjct: 139 GIKSAQRAGF-SPMI-IETDSQEVVDLTLSKKVSITETSWLIADIQESIQSSNQFSIQYT 198

Query: 134 PRSQNGAAHALA 146
           PR  N  AH LA
Sbjct: 199 PRECNVTAHDLA 208

[Close]

BLAST of Lcy06g020010 vs. NCBI nr
Match: XP_015388122.1 (uncharacterized protein LOC107178012 [Citrus sinensis] >XP_024041306.1 uncharacterized protein LOC112098894 [Citrus clementina])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 43/132 (32.58%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 14  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWE 73
           NPPP   +K+N DA+ N+KD+ +GLG I+R+S    V A +  S     +  +EA+A+  
Sbjct: 79  NPPPSGWFKINVDAAMNVKDQMAGLGVIIRNSKGEVVAAAVQKSCFQLSSTHMEAEAVIL 138

Query: 74  GLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHC 133
           G+KS Q   F   ++ +E+D  E++D   S +  ++++   +  I +  QS      ++ 
Sbjct: 139 GIKSAQRAEF--SLMIIETDSQEVVDLTLSKKVSITETSWIIADIQESIQSSNQFSIQYT 198

Query: 134 PRSQNGAAHALA 146
           PR  N  AH LA
Sbjct: 199 PRECNVTAHDLA 208

[Close]

BLAST of Lcy06g020010 vs. NCBI nr
Match: XP_021763631.1 (uncharacterized protein LOC110728264 [Chenopodium quinoa])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 0


Query: 5   REPPESRSRN--------PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVS 64
           REP  S  R+        PP    +KLN+DAS + KD R GLG +VRD+    +     S
Sbjct: 111 REPTTSIERSSEVTGLWIPPTSSRYKLNTDASIS-KDRRGGLGMVVRDNIGDVMMTWGKS 170

Query: 65  SKNLWPTKALEAKAMWEGLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVE 124
                    +EA A+  G++++    F  + +EV SDCL++I+ LN  + + S +++ V 
Sbjct: 171 LNGTGIISEIEAVALLFGMRAVFDAGF--RKLEVSSDCLQVIELLNGSKHENSPTQLIVT 230

Query: 125 AILDLAQSLGVLHFKHCPRSQNGAAHALA 146
            IL  A S   + F  CPR  N  AH++A
Sbjct: 231 DILSFAYSFDFVCFSFCPRLCNKVAHSMA 256

[Close]

BLAST of Lcy06g020010 vs. NCBI nr
Match: XP_015381032.1 (uncharacterized protein LOC107174551 [Citrus sinensis])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 14  NPPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAMWE 73
           +PPP    K+N DA+ +++++ +GLG +VRDSD +   A I S +        EA AM  
Sbjct: 117 SPPPNGWQKVNVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATAMEW 176

Query: 74  GLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHC 133
           GL+  +  N   ++   ESD LE+ID +N     L++    +  I +  Q+      +HC
Sbjct: 177 GLQVAEKANITFRIF--ESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNFQNFKAQHC 236

Query: 134 PRSQNGAAHALA 146
           PR  N AAH+LA
Sbjct: 237 PRDCNYAAHSLA 246

[Close]

BLAST of Lcy06g020010 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.0e-05
Identity = 39/132 (29.55%), Postives = 57/132 (43.18%), Query Frame = 0


Query: 15  PPPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTKALEAKAM-WE 74
           PPP    K N+DA+WN  +ER G+GW++R+           +   L      E +AM W 
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRW- 481

Query: 75  GLKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHC 134
               L L  F    +  ESD   LI+ LN+ +E     K  ++ +  L      + F   
Sbjct: 482 --AVLSLSRFQYNYVIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFTEVKFVFI 541

Query: 135 PRSQNGAAHALA 146
           PR  N  A  +A
Sbjct: 542 PREGNTLAERVA 549

[Close]

BLAST of Lcy06g020010 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 9.8e-05
Identity = 38/131 (29.01%), Postives = 62/131 (47.33%), Query Frame = 0


Query: 16  PPLCCWKLNSDASWNIKDERSGLGWIVRDSDRSPVCADIVSSKNLWPTK-ALEAKAMWEG 75
           PP    K N+DA+W +++ R G+GWI+R+     +    + ++ L  TK  LEA+     
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLW---MGARALPRTKNVLEAELEALR 199

Query: 76  LKSLQLLNFLSQMIEVESDCLELIDNLNSGEEDLSDSKVFVEAILDLAQSLGVLHFKHCP 135
              L +  F  + I  ESD   L++ LNS ++     +  +E I  L      + F+  P
Sbjct: 200 WAVLTMSRFNYKRIIFESDAQALVNLLNS-DDFWPTLQPALEDIQQLLHHFEEVKFEFTP 259

Query: 136 RSQNGAAHALA 146
           R  N  A  +A
Sbjct: 260 RGGNKVADRIA 266

The following BLAST results are available for this feature:

BLAST of Lcy06g020010 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy06g020010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4B6	4.2e-11	35.66	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A803L9N8	1.1e-08	34.23	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A7J6H9K5	9.6e-08	35.11	RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_030772 PE=...	[more]
A0A803P8R6	9.6e-08	34.62	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6F7X7	2.8e-07	34.35	RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_013892 PE=...	[more]

BLAST of Lcy06g020010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148549.1	8.6e-11	35.66	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
XP_015388332.1	1.8e-08	34.85	uncharacterized protein LOC107178077 [Citrus sinensis]	[more]
XP_015388122.1	2.3e-08	32.58	uncharacterized protein LOC107178012 [Citrus sinensis] >XP_024041306.1 uncharact...	[more]
XP_021763631.1	2.3e-08	34.23	uncharacterized protein LOC110728264 [Chenopodium quinoa]	[more]
XP_015381032.1	3.1e-08	34.85	uncharacterized protein LOC107174551 [Citrus sinensis]	[more]

BLAST of Lcy06g020010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.0e-05	29.55	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	9.8e-05	29.01	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 20..145 e-value: 7.4E-10 score: 41.0
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 24..145 e-value: 6.9E-18 score: 64.6
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 14..145
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 14..145
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 23..145 e-value: 6.95212E-22 score: 82.7472
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 20..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g020010.1	Lcy06g020010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity