Lcy06g013020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g013020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr06: 18244825 .. 18252722 (-)
RNA-Seq Expression	Lcy06g013020
Synteny	Lcy06g013020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTAAGGCTTACATTGCTGCCTTGGATAGCCAAGATGGTAGGTTTTTATCCTCAGAAGCAGAGATTGAGGAGGAAATCATCCAGTTTTATTCAAATCTCTATACTAGGGATGATAGCCCTCGGTTTGTCATTGAAGGGGTCAATTGGGAGCCTATTGATGAGCATAGCAGTGCCTTGCTTGAGACTCCCTTCAGTGAGGAAGAGATATTTAGAGCTGTAAAAGGCATGGGAGATTAAAAAGCCCCGGGTCCCGACGGCATGACTGGTGAATTTTTTAAAAACTTTTGGAACATCTTGAAATGTGACTTAGTAGAGCTGTTCCACGAGTTTTTCAAAAATGGCATCATCAACAAGAAGACAAATGAGACGTACATATGTTTAATCCCAAAGAAGAAGAAAGCCTCTAATGTGCAGGATTTTAGACCTATAAGTTTGGTTACTTCTCTATACAAAATCATAGCAAAGGTCCTTGCTGATAGATTGAAGAATGTGCTCCCATAGACAATTAGTGAGTGTCAAGTCGCGTTTGTTTATGGTAGCAGATTTTAGATCCGATTCTTGTGGCTAACGAAGCAGTGGAAGAGTATAGGATCAATAAGAAAGAGGGCCTTTTGATGAAACCTGATCTTGAGAAAGCCTACGATAAAGTGAGCTGGGAGTTCCTCGACACCATTCTTGCCCCCAAAGGTTTTGGTCATACTTGGAGAATGTGGATAAGGGGATGTCTTTGTAATACAAACTTCTCCATCATTATCAATGGTAAGCCAAGAGGGAAAATTCATGCTTCTAGAGGGCTTTGGCAAGGGGACCCCCTCTCCCCTTTTCTTTTCACCATTGTGGGTGATGCTTTGAGTCGATCTATTCAGTATTGCATCGAGAGGAATATTTTGAAAGGTTTCTCGGTGGGGAAGAATAGAGTTGAGGTGTCTATGCTCCAATTTACAGATGACACCTTGATTTTTTGCCCAAATGAGGAAGAGATCATGGATAAGTGGTGGGAGATTCTGAGGGCGATTTTAGATGGTGCTAGCCTTTCCATGAACCTTACCAAGACATCCATCATTGGTATAAACTTAGATGATGAGAAAGTGAATGATAGGGCGATCAAAATGGGCTGCAGAGTGGAAAATTTCCCGATTAACTACCTTGGATTTGTGTTAGGTGGAAACCAAAAGAGGGTTGCGTTTTGGGATCCTCTGGTGGACAAATTCAAAGCAAAGTTAGATGTGTGGAGGCATTTTCTATTATCTAAGGGTGGTAGAGTTACCTTGGTTCAATCCATTCTAAATAGCATCCCAATTTATCACTTCTCTCTGTTGAAGGCTCCTAAAACAGTTATTATGAAGCTGGAAAAGATTATTAGAGATTTCGTGTGGAGTGGTGGTTCATATAAACCGGGTGGCAACTTAATCAAATGGGAGTGGACAACTTTACTGTAATACCTATTTCTACGTAGTTATAATAATAATAATAAGGGTTACAACTGGAGGGAAAAAAAAAGGAAAAACAACAACAAAACAAAACTATATATATATAAAAGAAAAGTACTTTTAATATAAAAACAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGGGGTGGAAGAAAGCTTCCGTTGGAAGCCTTAAAAAAAATTAAAAATTTAAGAGGAAAAGTAAAGCTTCCATGAAAAAAAAAATAAATAAATAGAAATTTGGAAAGGCAGAATCGGGGAGAAAAAGAAGAGAAAAAGAAAGGGAGAGAAAAGAGAGAAAGGGGGGAGACGGAAGCAAAAGGGGAGCCAAAAATTTTGGCATTCTTGAACGATTTTAGAAGGGAAAAAAAATCAAGAAGCGCACAACCTTGGATTCAAGTATTGGGTATGTTTCTTGTTCTTGGTTTGAGCTTTTGCACAAGTTAAGAAGCTAAAAAAATGGGTTTCATTTGTGGGTTTTTCTTCTTTGACTTGGATACTCCATGGATTAGTTTGAAAACTAGGAGATTCATAATGGGTTGAGTTCAAAGAGAGAAAAACTTGATAAAAACTCATAGTTTAAGCCAAAAGAGAAATTGATAACCATTCATAGGTTGTTGGTTGCAAGCTTTTAAGGGGTAATGTTCAAGGAGAAGAAGAGAAGAAATGAAAAGAGTTAAGCTTTTTATAAAGAGGTGTGCAATGGAGTTATTGGAAAACCTATTTTAGAAATATGGTAACATTTACATGGTAGTTGGAGGCTAAGCTCATGAAAATTATAGTTATTCCAAGTGTTAAAAGGGGAACTAAAGCTTGGTATAATCTAGTGATGTGTTTTAATATGGAGATTTAAAAGTCGTTAATACTTGGGTAATTATTATTTCAGGCCAAACAGAGATCGGGACTGCCTACGACCCAAACTTCTCTCATCAATAGTATAGTGAGTGGTTATTCTTCAAAATACTTTTCTTATTTAGAAATTAATGAAATTTGAGTTTGAAGTCAATTATGATATATATGTATATATTTGTACAAATGAGTTAGTTGTTGAGGATTATGACAATTTCTAAGACTATTGTAGAAATGTGACTTATGGTTTTGAAGCTTTAAGATTTTAGCCTATCGGCAAAGGCCCAAGTTCTTTTGAAATTTTACGATCATATAACTATACATTTCAAATATTTGGAAGTTTTAAAGTGAATGAAGTGTTTGAAATATGATTTGCTTGAGATGAGAAACTTAATTAATTTCAATGTTTTATTGATGTCAAGCACTTAACTATGGCATGGAAATTTCTCAAATATGATCCTTGGTTTACAATGCATTCTTTTAAAACGATTATAACGCTAGTGTGGTTTGAGAGCATGTAACTATAATGTTGACATTGTTTTCGAACCACTAGAGATTGTACCCATGGTGAGATCCCAATGCACTTGCGTGAATGTGTTTCCGTGGTGTATGTATGATATGTATGAGGTCTTTGGGACCCACTTCGGCACACACATAAGCTTTGGGTTGTGTGTCGAGGTGCTTTGCCTTTTGGGGGTTGCTCTGCGCGCGTATGACCAAGAAAGCTCTGCCACACATCTTGAGATTACTCGATATATGGTATGACCAGATTTGCTGTGCTACATATCTTGAGACTACTCGATATGTTGTATGACCAGTTGCTCTGCTTTATACGTCGAGTTTCTCTGTATATAGTATGACCAGTTTCGGGTACAACTATTAGTGATGGAAAAACTTCTCATAGCCCATGATGGTTTATCTTTCCAAATGCTTATGTTACAGTGTTTTCGATTTTAGACATTTCACGTTTTAACTTGCAAAAGACTTTATCTGGTATCTCGAGGTTTTATTCATCAAAAGTCTATATTGTTTGTTAAATTATGATTGCAACTATGTTTGTCATGAGTTCCTAAAAAGTCGCATCTTATCTCTTTTTATATATAAATTCTCACCACTCACTGGGCTTATTAGCTCACCCTTTTTCTTTCTAAATTTTTTCTACCAGGTAGTAGTTGAGTTCCTGACGAGCCTACCAGAGTTGAGATCTGCCACCAAACTCAATAGGTTGCATGTCATTTTGCATTATTTATAGATGTATCTTTTTTTTTTTTGTAACTAGAATGGCTAGCATCTTCATGGTGATGTATGATCATGGTTGTTAGGGTGGTTTTGTGATTGAAAACTATATGTTGTGTTGTGTAGTTTGACTATACCATGGTTGTAAATTCTGAACCGACTTGGGTGCTGGTGTTGGATTTTATATTATGATTATTTGGGAGTGTTAAATCTTGTTTTTAGGTGGGTTAGATATCAATAATTTCAGGGGAAACTCTGCCAAAATTTTTATGATTTCTGTTTATTTAATAAACCATTGCTAGCCACGTTTTGAAAATTCTTTTTCATAGTCAATCCAGTTCATGCATAGTTGACAATGAAGTTTGTAGTTAGTTGGGATTTCATTGTCAACACGTCACGTCCGAGGTTGGTTAGAATAATCTGGGGCGGGGCGTGTCAGTTTGGTATCAGAGCATTAAGATCCTGCATTAGTTCAGTAGTTGTTGCATTTTCTAACATAATGATTGTGTGACATGCATTACATCATAGGGAATCATGCCTCGAGGTGGCAGAACGCGTAGGCTCCAGGACCTTGAATCTCAACCAACTTCTGATGGACAAAATTCAGTTGAAGAAGAAACCGTTGGTGAATCTAGTCACCAACATGTGAATCAAACTGAAAATGTAAATGAAGAAGATGAACAATTGACGGCGAGAATTGCGCAAGGCATAGCAGTAGGTATACTAATGCTCAGAAATGACCCAGAGAAAAATTTTAGAATTGAGTGGCTAAAAGCTTTGGGTGCTACTACGTTTGCTGGGACAACAGACCCATTTGACGCTGAATTGTGGATGGAAATGTTAGAGAAATGTTTCAATGTCATGGGATGTCCTGAAGATAGAAAAGTACGACTAGCCACTTTCTTACTCCAAGGGGGGCAGATGACTGGTGGAAATCGTTGAGAAGTAGACGAGAAGAATCAGAAGTAATTGAATGGAAAGAGTTCAAGAAAGCCTTTTATGACGAATACTATCCTCGTTCCTATAGGGATGCAAAACGAAGCGAATTCTTGAAATTAGTGCAAGGATCAATGACTGTGGCAGAGTATCAAAAGAAGTATGTTGAGCTTTTGAAGTATGCTACGACTATTATCGAAGATGAGATTTATAAGTGTAAGAGGTTTGAAGATGGCCTAAGGGAAGAGATTCGAAGTTCCACCACCACAGTGGAATGGAAGGAATTCGAGAAGTTGGTAGAAGCAGCTTTGAGGGTTGAGAAAAGCAAATCTGAAGGTAAGAGTCAAAGAGAGCCCTCAAAGAATGTACGTGGCTTTCCAGGAGGCGCTACTAATGCCTCTGGTGGTAGACAATTTCAAAGTGGTAACAGAAGGTTTACCCCAGGAGTGGCAGATCGAGGAAATTTTAAACCCAGACATCGAGGGTCATCAGGCTTCAGATCAAAGTCGTTGAGTGCATCTGTCCAAGCGTCAAATAGTTCGACCCATTCTTCTAGATCCTCAAGTGGTCAACGCACTTGGCAACAAGGTGAGTTTGATTATCACACTAGAAACCCACAATGCCCGCAATGTGGGAAATTTCATCAAGGACAGTGCTTCCGAGGTACAAACACTTGCTACAACTGTGGTCAGATGGGCCACATGAGAAGAGAATGTCCATCATTATTTTAGAGGGCTAGTGGTGCACAAGGGTCATTTTCTCAACACGATCAAACCAAGACACAGGCTAGTCAAGGGCAACCTAATTTGCAAGCAAGAGTCATTGCAACAAGTAGTGAAGGCCAATCCAATATTGCGAACTCTAGTGGGTCAAACTCGAAGGGTCAAGTTGGGAAACCTCGCAACCAAGGGAAGGTATTCGCCATGACTCAACAAGAAGCTCATGGGTCGCTTGATGTTGTTATGGGTATGTTATCTATTGTTGGTAAAAATGCTCGTACTTTAATAGATCCTGGTGCTACGCATTCTTTATTTCTCCTATATTTTCTATTGGAATTAATAAGGTCTCAGAGTCCTTACTTGATGATTTAATTGTAGCCACTCCAGTTGGAAAATCTTTGTTGGCGAATAGTGTTTATCGAAATTGTACGTGTTGGGTTTTATGTCCTAAAACTCGTAGATAGTGAATGATTAACGAATTATACATTTGTATCAATAAAGTGTTATTGAGGTTTATGCAATAAAGTGTTATTGTCATATTAAGTCTAGAATTGCACAATATGACCAAAATCCAATAAACTAAGATCCTAGGTTGTTTACATGTAACTTGAACTAGTATGTGGGGACATACAGGGATCAGTGTTCAAGTAACAACCTAAAAGGTCTATAGTACAGGGATAAGGTTGGGTACCTTATCCTAGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAAACGTATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACTACTAGATGTAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAATCTTAATCCTGAGTGTGTCATGAACTCCTTCTCACGAGGGATTGTCCTTTGATTAGTACGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGACAAGACCGAGTGGGGGGCTGGGGACATGACAATACAAGATAGAATTCACTCCTTCTCCTATTGGGGCAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCCGGGTCTTGAACAAAGGCGCGCCGTCCTTTCCTGGCCCGAGAGGAACTCCTGTTTAGTGGTTGGACCCTAAACAACTTGTTCATTAGAGGGATCAGTGGTACTTAAGAATCCAGAGGTAACCCAGGGGTAAAACGATAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGTATTAGTCGATATCCGTGGACACAGAAATATTCTACAGTGAGAAGAGTGCAGTTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGATTGACTCGGTTAATGAGTTTAGCTGATCAATCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCACCTGCTAGCTCATAACGGGTTCTGAGATAATATAGTCTTGATTATTAAAGGGAATTTAAGTTAATTGTATCTTGATGCAATTAATATAATCTATGGGGATACATTATAGTATAAGTTTAATTAATGAATTAAACTTTATAATAAAATTAAGGAAAAAATACACTTTTGGTCCCTGAGGTTTGAGTTAGGATTCATTTTGGTCCCTGAGTTTTCAAACTCAACAATTTAGTCCCTAAGGTTTGGTTTTAGTTTACTTTTAGTCCCTCCATCCAATTTTCCGTTTATAATTAACGGATTGCTGACGTGACTTTGATTTTTTTATTAAAAAAATTGTTTTAAAATTTTTTTAAAATATAAATATATAAAAATAATAAAAAGATTATTATTTTATAATATTTTTATTTCTTTTTTCCTCACCCTCTCTCTTCTTCTTCTTCACCTTCGTAACCCTAAGTCCTCCTTCTTCGTAACTCTAAGTCTTGCCGCGGCAACCACCGGCCGCCGTCAACCGCCGCTCGCCGGCAGCAAGTGTCGCCGGCGGCCGGCCATTTTTTTTTTCTTCTTTTCCTCTTTCTTTTTTTCTTCTTCTTCTCTTTTCTCCCTTCTCCTTATTTTCTTTTTTTTTTTTCCTTCAAAAATCGAAGGAAGGTGGGAGCTCTCTCTTCCGTTTCCGGCGCCGGAAAACTCCCTTCCTCCCCATTTCTTTCACTTTAAAAAAAAACAAAAACGAAGGGGACCCTTCGAATCAGGACTGAAACATTCTAGATCTAAGATCTGGGGGGTTTTAAACTGAATATCTTGACCTCAAACCGAATACCCACGCAATTTTTCGGCCTCTATACCAAGACCCACATCGGAGCAAAAAACAGATCCACGCCGGAGCAAAAAAATAGACCCACAACAGTGCTAAAAACAGACCCACGGCGGCGCTAAAAACCGACGGCGTGACAGAGAGACGAACATCGGCGCTAAAAACAGATATGAAGCGTGTTCGACGGCTCGACGACTTCAAATCTGAAGCATTTTCCTGTTCGACGGCTGGACGACTTCAGATCGGCAGGTTCGACAGCTTCGGTTTTCCAGATCTGATTTATTGTTGGGTATGACAGGTTCGCTGGAGTAGCTGGCACGACGGCAGAGAGAGAGAGGAAGGGAGAGAGAAGGTAGCGGGCACGACGGCGAACGGCGGCGGTCGGAGTTGAGCGGCGGCGGCAATGGTGGAAGAGGTGGTTGAAGCTTTTAA

mRNA sequence

ATGAAAAGTAAGGCTTACATTGCTGCCTTGGATAGCCAAGATGGTAGGTTTTTATCCTCAGAAGCAGAGATTGAGGAGGAAATCATCCAGTTTTATTCAAATCTCTATACTAGGGATGATAGCCCTCGGTTTGTCATTGAAGGGGTCAATTGGGAGCCTATTGATGAGCATAGCAGTGCCTTGCTTGAGACTCCCTTCAGTGAGGAAGAGATATTTAGAGCTATTTTAGATCCGATTCTTGTGGCTAACGAAGCAGTGGAAGAGTATAGGATCAATAAGAAAGAGGGCCTTTTGATGAAACCTGATCTTGAGAAAGCCTACGATAAAGTGAGCTGGGAGTTCCTCGACACCATTCTTGCCCCCAAAGGTTTTGGTCATACTTGGAGAATGTGGATAAGGGGATGTCTTTGTAATACAAACTTCTCCATCATTATCAATGGTAAGCCAAGAGGGAAAATTCATGCTTCTAGAGGGCTTTGGCAAGGGGACCCCCTCTCCCCTTTTCTTTTCACCATTGTGGGTGATGCTTTGAGTCGATCTATTCAGTATTGCATCGAGAGGAATATTTTGAAAGGTTTCTCGGTGGGGAAGAATAGAGTTGAGGTGTCTATGCTCCAATTTACAGATGACACCTTGATTTTTTGCCCAAATGAGGAAGAGATCATGGATAAGTGGTGGGAGATTCTGAGGGCGATTTTAGATGGTGCTAGCCTTTCCATGAACCTTACCAAGACATCCATCATTGGTATAAACTTAGATGATGAGAAAGTGAATGATAGGGCGATCAAAATGGGCTGCAGAGTGGAAAATTTCCCGATTAACTACCTTGGATTTGTGTTAGGTGGAAACCAAAAGAGGGTTGCGTTTTGGGATCCTCTGGTGGACAAATTCAAAGCAAAGTTAGATGTGTGGAGGCATTTTCTATTATCTAAGGGTGGTAGAGTTACCTTGGTTCAATCCATTCTAAATAGCATCCCAATTTATCACTTCTCTCTGTTGAAGGCTCCTAAAACAGTTATTATGAAGCTGGAAAAGATTATTAGAGATTTCGTGTGGAGTGATATGAAGCGTGTTCGACGGCTCGACGACTTCAAATCTGAAGCATTTTCCTGTTCGACGGCTGGACGACTTCAGATCGGCAGGTTCGACAGCTTCGGTTTTCCAGATCTGATTTATTGTTGGGTATGACAGGTTCGCTGGAGTAGCTGGCACGACGGCAGAGAGAGAGAGGAAGGGAGAGAGAAGGTAGCGGGCACGACGGCGAACGGCGGCGGTCGGAGTTGAGCGGCGGCGGCAATGGTGGAAGAGGTGGTTGAAGCTTTTAA

Coding sequence (CDS)

ATGAAAAGTAAGGCTTACATTGCTGCCTTGGATAGCCAAGATGGTAGGTTTTTATCCTCAGAAGCAGAGATTGAGGAGGAAATCATCCAGTTTTATTCAAATCTCTATACTAGGGATGATAGCCCTCGGTTTGTCATTGAAGGGGTCAATTGGGAGCCTATTGATGAGCATAGCAGTGCCTTGCTTGAGACTCCCTTCAGTGAGGAAGAGATATTTAGAGCTATTTTAGATCCGATTCTTGTGGCTAACGAAGCAGTGGAAGAGTATAGGATCAATAAGAAAGAGGGCCTTTTGATGAAACCTGATCTTGAGAAAGCCTACGATAAAGTGAGCTGGGAGTTCCTCGACACCATTCTTGCCCCCAAAGGTTTTGGTCATACTTGGAGAATGTGGATAAGGGGATGTCTTTGTAATACAAACTTCTCCATCATTATCAATGGTAAGCCAAGAGGGAAAATTCATGCTTCTAGAGGGCTTTGGCAAGGGGACCCCCTCTCCCCTTTTCTTTTCACCATTGTGGGTGATGCTTTGAGTCGATCTATTCAGTATTGCATCGAGAGGAATATTTTGAAAGGTTTCTCGGTGGGGAAGAATAGAGTTGAGGTGTCTATGCTCCAATTTACAGATGACACCTTGATTTTTTGCCCAAATGAGGAAGAGATCATGGATAAGTGGTGGGAGATTCTGAGGGCGATTTTAGATGGTGCTAGCCTTTCCATGAACCTTACCAAGACATCCATCATTGGTATAAACTTAGATGATGAGAAAGTGAATGATAGGGCGATCAAAATGGGCTGCAGAGTGGAAAATTTCCCGATTAACTACCTTGGATTTGTGTTAGGTGGAAACCAAAAGAGGGTTGCGTTTTGGGATCCTCTGGTGGACAAATTCAAAGCAAAGTTAGATGTGTGGAGGCATTTTCTATTATCTAAGGGTGGTAGAGTTACCTTGGTTCAATCCATTCTAAATAGCATCCCAATTTATCACTTCTCTCTGTTGAAGGCTCCTAAAACAGTTATTATGAAGCTGGAAAAGATTATTAGAGATTTCGTGTGGAGTGATATGAAGCGTGTTCGACGGCTCGACGACTTCAAATCTGAAGCATTTTCCTGTTCGACGGCTGGACGACTTCAGATCGGCAGGTTCGACAGCTTCGGTTTTCCAGATCTGATTTATTGTTGGGTATGA

Protein sequence

MKSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSALLETPFSEEEIFRAILDPILVANEAVEEYRINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEEEIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFVLGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFSLLKAPKTVIMKLEKIIRDFVWSDMKRVRRLDDFKSEAFSCSTAGRLQIGRFDSFGFPDLIYCWV

Homology

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BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-20
Identity = 72/274 (26.28%), Postives = 126/274 (45.99%), Query Frame = 0


Query: 90  RINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKP 149
           R   K  +++  D EKA+DK+   F+   L   G    +   IR        +II+NG+ 
Sbjct: 588 RAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQK 647

Query: 150 RGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTD 209
                   G  QG PLSP LF IV + L+R+I+   +   +KG  +GK  V++S+  F D
Sbjct: 648 LEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIR---QEKEIKGIQLGKEEVKLSL--FAD 707

Query: 210 DTLIFCPNEEEIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVE 269
           D +++  N         +++      +   +N+ K+     N + +  +    ++   + 
Sbjct: 708 DMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIA 767

Query: 270 NFPINYLGFVLGGNQKRV--AFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPI 329
           +  I YLG  L  + K +    + PL+ + K   + W++   S  GR+ +V+  +    I
Sbjct: 768 SKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVI 827

Query: 330 YHFSL--LKAPKTVIMKLEKIIRDFVWSDMKRVR 360
           Y F+   +K P T   +LEK    F+W + KR R
Sbjct: 828 YRFNAIPIKLPMTFFTELEKTTLKFIW-NQKRAR 855

[Close]

BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-20
Identity = 70/273 (25.64%), Postives = 129/273 (47.25%), Query Frame = 0


Query: 90  RINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKP 149
           ++  K+ +++  D EKA+D +   F+   L   G   T+   I         +II+NG  
Sbjct: 587 KLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVK 646

Query: 150 RGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTD 209
                   G  QG PLSP LF IV + L+ +I+   E   +KG  +G   +++S+  F D
Sbjct: 647 LKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLSL--FAD 706

Query: 210 DTLIFCPNEEEIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVE 269
           D +++  N  +   K  E+++   + +   +N T  S+  I  ++ +  ++ +K      
Sbjct: 707 DMIVYLENTRDSTTKLLEVIKEYSNVSGYKIN-THKSVAFIYTNNNQA-EKTVKDSIPFT 766

Query: 270 NFP--INYLGFVLGGNQKRV--AFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSI 329
             P  + YLG  L  + K +    ++ L  +    ++ W++   S  GR+ +V+  +   
Sbjct: 767 VVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPK 826

Query: 330 PIYHFSL--LKAPKTVIMKLEKIIRDFVWSDMK 357
            IY+F+   +KAP +    LEKII  F+W+  K
Sbjct: 827 AIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKK 852

[Close]

BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-18
Identity = 70/273 (25.64%), Postives = 123/273 (45.05%), Query Frame = 0


Query: 90  RINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKP 149
           ++  K  +++  D EKA+DK+   F+  +L   G    +   I+        +I +NG+ 
Sbjct: 595 KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEK 654

Query: 150 RGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTD 209
              I    G  QG PLSP+LF IV + L+R+I+   ++  +KG  +GK  V++S+L   D
Sbjct: 655 LEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIR---QQKEIKGIQIGKEEVKISLL--AD 714

Query: 210 DTLIFCPNEEEIMDKWWEILRAI--LDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCR 269
           D +++  + +    +   ++ +   + G  ++ N +   +   N   EK           
Sbjct: 715 DMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRETTPFSIV 774

Query: 270 VENFPINYLGFVLGGNQKRV--AFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSI 329
             N  I YLG  L    K +    +  L  + K  L  W+    S  GR+ +V+  +   
Sbjct: 775 TNN--IKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVKMAILPK 834

Query: 330 PIYHFSL--LKAPKTVIMKLEKIIRDFVWSDMK 357
            IY F+   +K P     +LE  I  FVW++ K
Sbjct: 835 AIYRFNAIPIKIPTQFFNELEGAICKFVWNNKK 860

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BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-10
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 136 LCNTNFSIIINGKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSV 195
           +C+     IING P+G +  SRGL QGDPLSP+LF +  + LS   +   E+  L G  V
Sbjct: 5   VCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV 64

Query: 196 GKNRVEVSMLQFTDDT 212
             N   ++ L F DDT
Sbjct: 65  SNNSPRINHLLFADDT 80

[Close]

BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot
Match: Q03274 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-08
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 0


Query: 80  LVANEAVEEYRINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNT 139
           L+ +  +   R  +K   ++  D+ KA+D VS   +   L   G       +I G L ++
Sbjct: 121 LLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDS 180

Query: 140 NFSIIIN-GKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKN 199
             +I +  G    KI   RG+ QGDPLSPFLF  V D L  S+Q         G ++G+ 
Sbjct: 181 TTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQ----STPGIGGTIGEE 240

Query: 200 RVEVSMLQFTDDTLIFCPNE 219
           ++ V  L F DD L+   N+
Sbjct: 241 KIPV--LAFADDLLLLEDND 254

[Close]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL
Match: A0A438F1Z0 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_92 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 2.6e-87
Identity = 162/374 (43.32%), Postives = 232/374 (62.03%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +S+ +I +L S+ G  L++   I EEI+ F+ NLY++ +   + IEG++W PI E S+  
Sbjct: 981  RSRKFIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIW 1040

Query: 62   LETPFSEEEIF----------------------RAILDPILVANEAVEEYRINKKEGLLM 121
            L+ PFSEEE+                       R ILD +L+ANE V+E R + +EG++ 
Sbjct: 1041 LDRPFSEEEVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVF 1100

Query: 122  KPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGL 181
            K D EKAYD V W FLD +L  KGF   WR W+RGCL +++F+I++NG  +  + ASRGL
Sbjct: 1101 KIDFEKAYDHVEWGFLDHVLQRKGFSQKWRSWMRGCLSSSSFAILVNGNAKSWVKASRGL 1160

Query: 182  WQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEE 241
             QGDPLSPFLFT+V D LSR +    E  I +GF VG++R  VS+LQF DDT+ F     
Sbjct: 1161 RQGDPLSPFLFTLVADVLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKASL 1220

Query: 242  EIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFV 301
            +++     IL      + L +NL K++I GIN   E ++  A+ + CRV  +P++YLG  
Sbjct: 1221 DLLQNLKIILLVFGQVSGLKINLEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLP 1280

Query: 302  LGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFSLLKAPKTV 354
            LGGN K + FWDP+V++   +LD W+    S GGR+TL+QS L+ IP Y  SL K P ++
Sbjct: 1281 LGGNPKTIGFWDPVVERISRRLDGWKKAYFSLGGRITLIQSCLSHIPSYFLSLFKIPVSI 1340

[Close]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL
Match: A0A438F983 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_319 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 162/400 (40.50%), Postives = 234/400 (58.50%), Query Frame = 0


Query: 2   KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
           +++ YI  L+++ G  L +   I EEI+ ++  LYT      + +EG++W PI E S+  
Sbjct: 123 RNRKYIKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALR 182

Query: 62  LETPFSEEEIFRA-----------------------------------------ILDPIL 121
           L++PF+EEEI +A                                         ILD +L
Sbjct: 183 LDSPFTEEEISKAIFQLDRDKAPGPDGFTIAVFQECWDVIKEDLVRVRFVQGRQILDAVL 242

Query: 122 VANEAVEEYRINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTN 181
           +ANE V+E R + +EG++ K D EKAYD V W+FLD +L  KGF   WR W+ GCL + +
Sbjct: 243 IANEIVDERRRSGEEGVVFKIDFEKAYDHVKWDFLDHVLEKKGFSPRWRKWMSGCLSSVS 302

Query: 182 FSIIINGKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRV 241
           ++I++NG  +G + ASRGL QGDPLSPFLFT+V D LSR +    ERN+++GF VG+NR 
Sbjct: 303 YAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMMEGFRVGRNRT 362

Query: 242 EVSMLQFTDDTLIFCPNEEEIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDR 301
            VS LQF DDT+ F  + EE +     +L      + L +NL K+SI GINLD   ++  
Sbjct: 363 RVSHLQFADDTIFFSNSREEELQTLKRLLLVFGHISGLKVNLNKSSIYGINLDQALLSRL 422

Query: 302 AIKMGCRVENFPINYLGFVLGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQS 361
           A  + C+   +PI YLG  LGGN K   FWDP+V++  ++LD W+   LS GGR+TL+QS
Sbjct: 423 AEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISSRLDGWQKAYLSFGGRITLIQS 482

[Close]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL
Match: A0A5E4GJ11 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035891 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.3e-83
Identity = 175/455 (38.46%), Postives = 239/455 (52.53%), Query Frame = 0


Query: 2   KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
           + + +I  L+   G  + SE EIE EII F+ NLY+ +    + +EG+NW  I    +  
Sbjct: 213 RKRNFIQKLEVAGGGVVVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEW 272

Query: 62  LETPFSEEEIFRA----------------------------------------------- 121
           L+ PF EEE+ RA                                               
Sbjct: 273 LDRPFEEEEVKRADLMKVMADFFNCGIINAITNETFICLIPKKKESVKVSDFRPISLVTS 332

Query: 122 ---------------------------------ILDPILVANEAVEEYRINKKEGLLMKP 181
                                            ILD  L+ANE VEE R   K G++ K 
Sbjct: 333 LYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEESRRLNKSGMVFKI 392

Query: 182 DLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGLWQ 241
           DLEKAYD V W F+D +L  KGFG  WR WIRGCL   NFS++ING+PRGK  ASRGL Q
Sbjct: 393 DLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGRPRGKFRASRGLRQ 452

Query: 242 GDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEEEI 301
           GDPLSPFLFT+V D LSR ++   + +   G S G   VE+S LQF DDT+ F  ++EE 
Sbjct: 453 GDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFADDTIFFIEDKEEY 512

Query: 302 MDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFVLG 361
            +   +IL      +S+ +N +K S++GINLDD  VN+ A   GC V  +P+ YLG  LG
Sbjct: 513 WNNLLQILELFCFVSSMKINKSKCSLVGINLDDGLVNELAGAWGCEVGVWPMLYLGLPLG 572

Query: 362 GNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFSLLKAPKTVIM 377
           GN + + FWDP+V+K + +L  W+   LSKGGR+T++Q++L SIPIY+ SL + P  V  
Sbjct: 573 GNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIYYMSLFRIPIGVAN 632

[Close]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL
Match: A0A438JYU3 (Protein SWEETIE OS=Vitis vinifera OX=29760 GN=SWEETIE_2 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 164/441 (37.19%), Postives = 241/441 (54.65%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +++ +I  L++++G  +++   I+EEI++++  LYT      + +EG++W PI   S+  
Sbjct: 1249 RNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESAFR 1308

Query: 62   LETPFSEEEIFRA----------------------------------------------- 121
            LE+PF+EEEIF+A                                               
Sbjct: 1309 LESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVKHLRRISDFRPISLI 1368

Query: 122  -----------------------------------ILDPILVANEAVEEYRINKKEGLLM 181
                                               ILD +L+ANE V+E R +++EG++ 
Sbjct: 1369 TSLYKIIAKVLAGRIRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKRRSREEGVVF 1428

Query: 182  KPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGL 241
            K D EKAYD VSW+FLD +L  KGFG  WR W+RGCL + +F++++NG  +G + ASRGL
Sbjct: 1429 KIDFEKAYDHVSWDFLDHVLEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWVKASRGL 1488

Query: 242  WQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEE 301
             QGDPLSPFLFTIV D LSR +    E+N+L+GF VG+NR  VS LQF DDT+ F  + E
Sbjct: 1489 RQGDPLSPFLFTIVADVLSRMLLKAEEKNVLEGFKVGRNRTRVSHLQFADDTIFFSSSRE 1548

Query: 302  EIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFV 361
            E M     +L      + L +NL K++I GINL+   ++  A  + C+   +PI YLG  
Sbjct: 1549 EDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPILYLGLP 1608

[Close]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL
Match: A0A438C9K9 (Biotin synthase, mitochondrial OS=Vitis vinifera OX=29760 GN=BIO2_1 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 2.9e-83
Identity = 165/420 (39.29%), Postives = 234/420 (55.71%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +S+ YI +L S+ G  L++   I EEI+ F+ NLY++ +   + IEG++W PI E S+  
Sbjct: 1059 RSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIW 1118

Query: 62   LETPFSEEEI-------------------------------------------------- 121
            L+ PFSEEE+                                                  
Sbjct: 1119 LDRPFSEEEVRMAVFQLNKEKAPGPDGFTLAVYQECWDVIKEDLMRVFFEFHTKGVLSGR 1178

Query: 122  ------------------FRAILDPILVANEAVEEYRINKKEGLLMKPDLEKAYDKVSWE 181
                               R ILD +L+ANE V+E R + +EG++ K D EKAYD V W 
Sbjct: 1179 LRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVFKIDFEKAYDHVEWG 1238

Query: 182  FLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGLWQGDPLSPFLFTIV 241
            FLD +L  KGF   WR W+RGCL +++F+I++NG  +G + ASRGL QGDPLSPFLFT+V
Sbjct: 1239 FLDHVLQRKGFSQKWRSWMRGCLSSSSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLV 1298

Query: 242  GDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEEEIMDKWWEILRAIL 301
             D LSR +    E  I +GF VG++R  VS+LQF DDT+ F     +++     IL    
Sbjct: 1299 ADVLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKASLDLLQNLKIILLVFG 1358

Query: 302  DGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFVLGGNQKRVAFWDPL 354
              + L +NL K++I GIN   E ++  A+ + CRV  +P++YLG  LGGN K + FWDP+
Sbjct: 1359 QVSGLKINLEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPV 1418

[Close]

BLAST of Lcy06g013020 vs. NCBI nr
Match: RVW53981.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 332.4 bits (851), Expect = 5.3e-87
Identity = 162/374 (43.32%), Postives = 232/374 (62.03%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +S+ +I +L S+ G  L++   I EEI+ F+ NLY++ +   + IEG++W PI E S+  
Sbjct: 981  RSRKFIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIW 1040

Query: 62   LETPFSEEEIF----------------------RAILDPILVANEAVEEYRINKKEGLLM 121
            L+ PFSEEE+                       R ILD +L+ANE V+E R + +EG++ 
Sbjct: 1041 LDRPFSEEEVLSGRLRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVF 1100

Query: 122  KPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGL 181
            K D EKAYD V W FLD +L  KGF   WR W+RGCL +++F+I++NG  +  + ASRGL
Sbjct: 1101 KIDFEKAYDHVEWGFLDHVLQRKGFSQKWRSWMRGCLSSSSFAILVNGNAKSWVKASRGL 1160

Query: 182  WQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEE 241
             QGDPLSPFLFT+V D LSR +    E  I +GF VG++R  VS+LQF DDT+ F     
Sbjct: 1161 RQGDPLSPFLFTLVADVLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKASL 1220

Query: 242  EIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFV 301
            +++     IL      + L +NL K++I GIN   E ++  A+ + CRV  +P++YLG  
Sbjct: 1221 DLLQNLKIILLVFGQVSGLKINLEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLP 1280

Query: 302  LGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFSLLKAPKTV 354
            LGGN K + FWDP+V++   +LD W+    S GGR+TL+QS L+ IP Y  SL K P ++
Sbjct: 1281 LGGNPKTIGFWDPVVERISRRLDGWKKAYFSLGGRITLIQSCLSHIPSYFLSLFKIPVSI 1340

[Close]

BLAST of Lcy06g013020 vs. NCBI nr
Match: RVW56511.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 326.6 bits (836), Expect = 2.9e-85
Identity = 162/400 (40.50%), Postives = 234/400 (58.50%), Query Frame = 0


Query: 2   KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
           +++ YI  L+++ G  L +   I EEI+ ++  LYT      + +EG++W PI E S+  
Sbjct: 123 RNRKYIKELENERGLVLKNAESITEEILHYFEKLYTNPTGESWGVEGLDWSPISEESALR 182

Query: 62  LETPFSEEEIFRA-----------------------------------------ILDPIL 121
           L++PF+EEEI +A                                         ILD +L
Sbjct: 183 LDSPFTEEEISKAIFQLDRDKAPGPDGFTIAVFQECWDVIKEDLVRVRFVQGRQILDAVL 242

Query: 122 VANEAVEEYRINKKEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTN 181
           +ANE V+E R + +EG++ K D EKAYD V W+FLD +L  KGF   WR W+ GCL + +
Sbjct: 243 IANEIVDERRRSGEEGVVFKIDFEKAYDHVKWDFLDHVLEKKGFSPRWRKWMSGCLSSVS 302

Query: 182 FSIIINGKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRV 241
           ++I++NG  +G + ASRGL QGDPLSPFLFT+V D LSR +    ERN+++GF VG+NR 
Sbjct: 303 YAILVNGSAKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLMRAEERNMMEGFRVGRNRT 362

Query: 242 EVSMLQFTDDTLIFCPNEEEIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDR 301
            VS LQF DDT+ F  + EE +     +L      + L +NL K+SI GINLD   ++  
Sbjct: 363 RVSHLQFADDTIFFSNSREEELQTLKRLLLVFGHISGLKVNLNKSSIYGINLDQALLSRL 422

Query: 302 AIKMGCRVENFPINYLGFVLGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQS 361
           A  + C+   +PI YLG  LGGN K   FWDP+V++  ++LD W+   LS GGR+TL+QS
Sbjct: 423 AEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISSRLDGWQKAYLSFGGRITLIQS 482

[Close]

BLAST of Lcy06g013020 vs. NCBI nr
Match: VVA39726.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 320.1 bits (819), Expect = 2.7e-83
Identity = 175/455 (38.46%), Postives = 239/455 (52.53%), Query Frame = 0


Query: 2   KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
           + + +I  L+   G  + SE EIE EII F+ NLY+ +    + +EG+NW  I    +  
Sbjct: 213 RKRNFIQKLEVAGGGVVVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEW 272

Query: 62  LETPFSEEEIFRA----------------------------------------------- 121
           L+ PF EEE+ RA                                               
Sbjct: 273 LDRPFEEEEVKRADLMKVMADFFNCGIINAITNETFICLIPKKKESVKVSDFRPISLVTS 332

Query: 122 ---------------------------------ILDPILVANEAVEEYRINKKEGLLMKP 181
                                            ILD  L+ANE VEE R   K G++ K 
Sbjct: 333 LYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEESRRLNKSGMVFKI 392

Query: 182 DLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGLWQ 241
           DLEKAYD V W F+D +L  KGFG  WR WIRGCL   NFS++ING+PRGK  ASRGL Q
Sbjct: 393 DLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGRPRGKFRASRGLRQ 452

Query: 242 GDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEEEI 301
           GDPLSPFLFT+V D LSR ++   + +   G S G   VE+S LQF DDT+ F  ++EE 
Sbjct: 453 GDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFADDTIFFIEDKEEY 512

Query: 302 MDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFVLG 361
            +   +IL      +S+ +N +K S++GINLDD  VN+ A   GC V  +P+ YLG  LG
Sbjct: 513 WNNLLQILELFCFVSSMKINKSKCSLVGINLDDGLVNELAGAWGCEVGVWPMLYLGLPLG 572

Query: 362 GNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFSLLKAPKTVIM 377
           GN + + FWDP+V+K + +L  W+   LSKGGR+T++Q++L SIPIY+ SL + P  V  
Sbjct: 573 GNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIYYMSLFRIPIGVAN 632

[Close]

BLAST of Lcy06g013020 vs. NCBI nr
Match: RVX14115.1 (Protein SWEETIE [Vitis vinifera])

HSP 1 Score: 319.3 bits (817), Expect = 4.6e-83
Identity = 164/441 (37.19%), Postives = 241/441 (54.65%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +++ +I  L++++G  +++   I+EEI++++  LYT      + +EG++W PI   S+  
Sbjct: 1249 RNRKFIKELENENGLMMNNSESIKEEILRYFEKLYTSPSGESWRVEGLDWSPISGESAFR 1308

Query: 62   LETPFSEEEIFRA----------------------------------------------- 121
            LE+PF+EEEIF+A                                               
Sbjct: 1309 LESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVKHLRRISDFRPISLI 1368

Query: 122  -----------------------------------ILDPILVANEAVEEYRINKKEGLLM 181
                                               ILD +L+ANE V+E R +++EG++ 
Sbjct: 1369 TSLYKIIAKVLAGRIRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKRRSREEGVVF 1428

Query: 182  KPDLEKAYDKVSWEFLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGL 241
            K D EKAYD VSW+FLD +L  KGFG  WR W+RGCL + +F++++NG  +G + ASRGL
Sbjct: 1429 KIDFEKAYDHVSWDFLDHVLEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWVKASRGL 1488

Query: 242  WQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEE 301
             QGDPLSPFLFTIV D LSR +    E+N+L+GF VG+NR  VS LQF DDT+ F  + E
Sbjct: 1489 RQGDPLSPFLFTIVADVLSRMLLKAEEKNVLEGFKVGRNRTRVSHLQFADDTIFFSSSRE 1548

Query: 302  EIMDKWWEILRAILDGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFV 361
            E M     +L      + L +NL K++I GINL+   ++  A  + C+   +PI YLG  
Sbjct: 1549 EDMMTLKNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPILYLGLP 1608

[Close]

BLAST of Lcy06g013020 vs. NCBI nr
Match: RVW19920.1 (Biotin synthase, mitochondrial [Vitis vinifera])

HSP 1 Score: 318.9 bits (816), Expect = 6.0e-83
Identity = 165/420 (39.29%), Postives = 234/420 (55.71%), Query Frame = 0


Query: 2    KSKAYIAALDSQDGRFLSSEAEIEEEIIQFYSNLYTRDDSPRFVIEGVNWEPIDEHSSAL 61
            +S+ YI +L S+ G  L++   I EEI+ F+ NLY++ +   + IEG++W PI E S+  
Sbjct: 1059 RSRKYIKSLISERGETLNNIEVISEEIVNFFGNLYSKPEGDSWKIEGIDWAPISEESAIW 1118

Query: 62   LETPFSEEEI-------------------------------------------------- 121
            L+ PFSEEE+                                                  
Sbjct: 1119 LDRPFSEEEVRMAVFQLNKEKAPGPDGFTLAVYQECWDVIKEDLMRVFFEFHTKGVLSGR 1178

Query: 122  ------------------FRAILDPILVANEAVEEYRINKKEGLLMKPDLEKAYDKVSWE 181
                               R ILD +L+ANE V+E R + +EG++ K D EKAYD V W 
Sbjct: 1179 LRKVLHETIFGSQGAFVEGRQILDAVLIANEVVDEKRRSGEEGVVFKIDFEKAYDHVEWG 1238

Query: 182  FLDTILAPKGFGHTWRMWIRGCLCNTNFSIIINGKPRGKIHASRGLWQGDPLSPFLFTIV 241
            FLD +L  KGF   WR W+RGCL +++F+I++NG  +G + ASRGL QGDPLSPFLFT+V
Sbjct: 1239 FLDHVLQRKGFSQKWRSWMRGCLSSSSFAILVNGNAKGWVKASRGLRQGDPLSPFLFTLV 1298

Query: 242  GDALSRSIQYCIERNILKGFSVGKNRVEVSMLQFTDDTLIFCPNEEEIMDKWWEILRAIL 301
             D LSR +    E  I +GF VG++R  VS+LQF DDT+ F     +++     IL    
Sbjct: 1299 ADVLSRLMIRAEETGITEGFLVGRDRTRVSLLQFADDTIFFSKASLDLLQNLKIILLVFG 1358

Query: 302  DGASLSMNLTKTSIIGINLDDEKVNDRAIKMGCRVENFPINYLGFVLGGNQKRVAFWDPL 354
              + L +NL K++I GIN   E ++  A+ + CRV  +P++YLG  LGGN K + FWDP+
Sbjct: 1359 QVSGLKINLEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPV 1418

[Close]

BLAST of Lcy06g013020 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-11
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 136 LCNTNFSIIINGKPRGKIHASRGLWQGDPLSPFLFTIVGDALSRSIQYCIERNILKGFSV 195
           +C+     IING P+G +  SRGL QGDPLSP+LF +  + LS   +   E+  L G  V
Sbjct: 5   VCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV 64

Query: 196 GKNRVEVSMLQFTDDT 212
             N   ++ L F DDT
Sbjct: 65  SNNSPRINHLLFADDT 80

[Close]

BLAST of Lcy06g013020 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-07
Identity = 24/82 (29.27%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 272 PINYLGFVLGGNQKRVAFWDPLVDKFKAKLDVWRHFLLSKGGRVTLVQSILNSIPIYHFS 331
           P+ YLG  L   +   + + PLV+K + ++  W    LS  GR+ L+ S+++S+  +  S
Sbjct: 24  PVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMS 83

Query: 332 LLKAPKTVIMKLEKIIRDFVWS 354
             + P   I +++ I   F+WS
Sbjct: 84  AFRLPSACIKEIDSICSSFLWS 105

[Close]

BLAST of Lcy06g013020 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-05
Identity = 24/58 (41.38%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 73  RAILDPILVANEAVEEYRINK--KEGLLMKPDLEKAYDKVSWEFLDTILAPKGFGHTW 129
           R   D I+   EAV   R  K  K  +L+K DLEKAYD++ W++L+  L   GF   W
Sbjct: 24  RVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVW 81

The following BLAST results are available for this feature:

BLAST of Lcy06g013020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O00370	1.2e-20	26.28	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P08548	2.0e-20	25.64	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
P11369	1.4e-18	25.64	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P92555	5.4e-10	42.11	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q03274	5.1e-08	31.43	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fra...	[more]

BLAST of Lcy06g013020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438F1Z0	2.6e-87	43.32	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438F983	1.4e-85	40.50	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_319 P...	[more]
A0A5E4GJ11	1.3e-83	38.46	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus dulcis OX=3...	[more]
A0A438JYU3	2.2e-83	37.19	Protein SWEETIE OS=Vitis vinifera OX=29760 GN=SWEETIE_2 PE=4 SV=1	[more]
A0A438C9K9	2.9e-83	39.29	Biotin synthase, mitochondrial OS=Vitis vinifera OX=29760 GN=BIO2_1 PE=4 SV=1	[more]

BLAST of Lcy06g013020 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW53981.1	5.3e-87	43.32	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW56511.1	2.9e-85	40.50	putative ribonuclease H protein [Vitis vinifera]	[more]
VVA39726.1	2.7e-83	38.46	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
RVX14115.1	4.6e-83	37.19	Protein SWEETIE [Vitis vinifera]	[more]
RVW19920.1	6.0e-83	39.29	Biotin synthase, mitochondrial [Vitis vinifera]	[more]

BLAST of Lcy06g013020 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	3.8e-11	42.11	RNA-directed DNA polymerase (reverse transcriptase)	[more]
AT3G24255.1	1.2e-07	29.27	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G20520.1	1.8e-05	41.38	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 79..279 e-value: 7.4E-27 score: 94.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..280 score: 14.96382
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 56..354
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 56..354
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 94..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g013020.1	Lcy06g013020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity