Lcy06g012790 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g012790
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr06: 17129790 .. 17131606 (+)
RNA-Seq ExpressionLcy06g012790
SyntenyLcy06g012790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCTGTTCTTCGATTTCGGAGGGACATACGAGTTCAGATCTGTGACCCCCCTCTCAGATCTGTCTTCTCCTTGCTCCCTCTTCATGAATCTGAGGTATCCTTGTTATCTTCTTTCGTCCCTTGTTTCGGATCTTACTGTTTCTTACGGATCTGACCCTAAAATATGGTTTCTTTGTTTTTTTTTCTTAAGATCCCACCCCATGCCGCTTCAACTTGCCGAGGTTGTCGGCGTTGGGATCTGCATGGTAGGTGATTGGAGCAAAGTGAGGGGTGGGAAGCAGGTAAGTCTTCTTCCCCCTTTGTAACCGACCGATGATGTCCCTCATGCATGCAAGCGACGTTTTCCATTTTTTTCGTAAATAATTTGTGCGTGTAAATTTTTCTCATTATGATCGTTCAGCTTGCTGTTTTTTTTTCTTGTATTCTAACATCACCTCTCGTTTGAGAAATTGGTTGGTTTTTCCTCTGCATGCTTGCTGTTTTTTTTTCCTGTGTTCTAACATCACCTCTCGTTTGAGAAATTGGTTGGTTTTTCCTCTGCATGCTTGCTGTTTTTTTGTATCTGTGTTCTAACCCCCCCCCCCCCCCCCCGAATTGGTTTTCTTATTTCATTTGTTGTTCTGTCCATTATTTGTTATTTGATAATCTTCTGATTATGTTGGTTATAATCCTCCTTCTGTCCATATTCGTTTCCTTCTCATTTCTGTTCTACATCCTGATGACTCTTAGCTCAATTTTTAATTGTCATTTGTGTTCTTGAGGATGATGGTACTGTGCATATTATTTACACGTTATTCATGCTTTCGATTTCTGTCCAAATTGTTAACTTCTAATTTGTCTTGTTCATGCTCATGGTGATGTCCATATTTTTTTGCCTTTTCATGTATCTGATGCTGGTGTCCAAATAATGTGCTTTCTCAAAATGTTCTTCTTCATTTTCGTGTTGACCATATTTTTCATTCTAACTCCCTTGTGAATACATTTGCTTTGCTTCTGCCCATATGCTTGCTTCTCTTTCTTTTGTTTCTATTCTTGGTTGTTCCGTCCATATGTGATTGATTTTGCCTCTGATTTTCTTTGGTGGATTTTATTTTCTGGTTGATACACATGATTTGTTTTTTCTAAATTTGAGAACTTCAATTTAATTATCTTCACCAACTTTGAACAAAGTTCTGTTTTTATGGGAAAATAAAATGCTTGACACTTGCTCCTGAGGCCATGAACTTTTTTTTTTTTTTTGGTTTTTAAGTAACTTAGTTCATTTTCGGTTCGTTTCTGACTAATCCCCTTAATTTGTAGCGATAATCGAGCGAGTGGAGTGGGGTGCTCTGTTCCGACAGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGACTGCAACTTCCAAGGGTCGCAGGATTATTACGTCCTAGTTCCTCCGGTCGTTAATCTGGGCGCCGAGGCCGAGTATGAGGACGTCCCTATCACACCCACCAGCCGACTGAGCACAGCAGGGTCCTCGCAGGGACAAAAGAGGAGCCGGGCATCGTACGAAGCAGAAGTGCTTGAAATAATGAGGAAGTCAGTGAACCTGCAAGAGACTCCGTTGACGAAAATTGCAAACTGGCCTGACACGCAGGACACAAGGGAGTTCAAGCGGCGTGACACAGTGGCAGAGATGCTCCTGGCGCAACCAGAGCTAACAGACGACGAGAGAGTGTCCTTAATGCGTATTCTCTTCGTCGACCCCAAAATGACTAACATGATGCTCTCTGTCCCACCGACCCTCAAGCTTCAATTCCTCCGAGGCCTACTGAATGAACGACGGTGA

mRNA sequence

ATGTGTCTGTTCTTCGATTTCGGAGGGACATACGAGTTCAGATCTGTGACCCCCCTCTCAGATCTGTCTTCTCCTTGCTCCCTCTTCATGAATCTGAGCGATAATCGAGCGAGTGGAGTGGGGTGCTCTGTTCCGACAGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGACTGCAACTTCCAAGGGTCGCAGGATTATTACGTCCTAGTTCCTCCGGTCGTTAATCTGGGCGCCGAGGCCGAGTATGAGGACGTCCCTATCACACCCACCAGCCGACTGAGCACAGCAGGGTCCTCGCAGGGACAAAAGAGGAGCCGGGCATCGTACGAAGCAGAAGTGCTTGAAATAATGAGGAAGTCAGTGAACCTGCAAGAGACTCCGTTGACGAAAATTGCAAACTGGCCTGACACGCAGGACACAAGGGAGTTCAAGCGGCGTGACACAGTGGCAGAGATGCTCCTGGCGCAACCAGAGCTAACAGACGACGAGAGAGTGTCCTTAATGCGTATTCTCTTCGTCGACCCCAAAATGACTAACATGATGCTCTCTGTCCCACCGACCCTCAAGCTTCAATTCCTCCGAGGCCTACTGAATGAACGACGGTGA

Coding sequence (CDS)

ATGTGTCTGTTCTTCGATTTCGGAGGGACATACGAGTTCAGATCTGTGACCCCCCTCTCAGATCTGTCTTCTCCTTGCTCCCTCTTCATGAATCTGAGCGATAATCGAGCGAGTGGAGTGGGGTGCTCTGTTCCGACAGAACAAGCAGAAAGCACTCACGGGGACGATGAGGGCGACTGCAACTTCCAAGGGTCGCAGGATTATTACGTCCTAGTTCCTCCGGTCGTTAATCTGGGCGCCGAGGCCGAGTATGAGGACGTCCCTATCACACCCACCAGCCGACTGAGCACAGCAGGGTCCTCGCAGGGACAAAAGAGGAGCCGGGCATCGTACGAAGCAGAAGTGCTTGAAATAATGAGGAAGTCAGTGAACCTGCAAGAGACTCCGTTGACGAAAATTGCAAACTGGCCTGACACGCAGGACACAAGGGAGTTCAAGCGGCGTGACACAGTGGCAGAGATGCTCCTGGCGCAACCAGAGCTAACAGACGACGAGAGAGTGTCCTTAATGCGTATTCTCTTCGTCGACCCCAAAATGACTAACATGATGCTCTCTGTCCCACCGACCCTCAAGCTTCAATTCCTCCGAGGCCTACTGAATGAACGACGGTGA

Protein sequence

MCLFFDFGGTYEFRSVTPLSDLSSPCSLFMNLSDNRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSRLSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNERR
Homology
BLAST of Lcy06g012790 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 0

Query: 35  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSR 94
           +RA+G     P + A S       D +F+ +QD+Y+  PP+ N   +A  ED+P TPTS+
Sbjct: 51  DRATGANLDCPVDMASSAAATIAEDAHFE-AQDFYIPDPPMFNTTEDAIEEDLPNTPTSK 110

Query: 95  LSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEM 154
            +   SS G KR R+ Y +E+++++R ++ +Q   L K+A WPD ++ ++  RR  V + 
Sbjct: 111 PTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQ 170

Query: 155 LLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE 202
           L   P L  ++ V L+ IL  + K +   L VP   K  F   LL +
Sbjct: 171 LKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGK 216

BLAST of Lcy06g012790 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 41/131 (31.30%), Postives = 63/131 (48.09%), Query Frame = 0

Query: 74  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTK 133
           P+ +LG     +D+  T T+R+S   + S G KR R  +  +  +I+R ++      L +
Sbjct: 514 PMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 573

Query: 134 IANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKL 193
           IA WP  Q     + R  + + L A PELT  +R  LMRIL  +       L VP  +K 
Sbjct: 574 IAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 633

Query: 194 QFLRGLLNERR 204
            +   +L E R
Sbjct: 634 PYCSIILQENR 644

BLAST of Lcy06g012790 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 42/132 (31.82%), Postives = 60/132 (45.45%), Query Frame = 0

Query: 73  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLT 132
           PP+ N G     +D+  T T+ +      S G KR RA + A+  +I+R  +  +   L 
Sbjct: 193 PPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLN 252

Query: 133 KIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLK 192
            IA WP  Q     + R  V   L A PELT  +R  LMRIL  +       L VP  +K
Sbjct: 253 HIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMK 312

Query: 193 LQFLRGLLNERR 204
             +   +L E +
Sbjct: 313 YPYCSIILQENQ 324

BLAST of Lcy06g012790 vs. ExPASy TrEMBL
Match: A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 40/132 (30.30%), Postives = 62/132 (46.97%), Query Frame = 0

Query: 73  PPVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLT 132
           PP+ + G     +D+  T T+R+S   + S G KR R  +  +  +I+R ++  +   L 
Sbjct: 135 PPMYSPGLNMSPDDLMETRTARVSERRNVSNGSKRKRPGHATDSGDIVRTAIEYENEQLH 194

Query: 133 KIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLK 192
           +IA WP  Q     + R  +   L A PELT  +R  LMRIL  +       L V   +K
Sbjct: 195 RIAEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMK 254

Query: 193 LQFLRGLLNERR 204
             +   +L E R
Sbjct: 255 YPYYSIILQENR 266

BLAST of Lcy06g012790 vs. ExPASy TrEMBL
Match: A0A5A7UPP6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00090 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-04
Identity = 40/132 (30.30%), Postives = 59/132 (44.70%), Query Frame = 0

Query: 73  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLT 132
           P + + G     +D+  T T+R+     +S G KR RA +  +  +I+R S+      L 
Sbjct: 28  PSMYSQGLNMSLDDLMGTRTARVHEHQNASSGSKRKRAGHSVDSGDIIRTSIEYGNEQLN 87

Query: 133 KIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLK 192
           +I  WP  Q     + R  V   L   PELT  +R  LMRIL  +       L VP  +K
Sbjct: 88  RIVEWPVLQHQDASETRQEVVRQLEVIPELTLMDRCHLMRILMHNVDDMKAFLDVPDNMK 147

Query: 193 LQFLRGLLNERR 204
             +   +L E R
Sbjct: 148 YPYCSIILQENR 159

BLAST of Lcy06g012790 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 5.6e-16
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 0

Query: 35  NRASGVGCSVPTEQAESTHGDDEGDCNFQGSQDYYVLVPPVVNLGAEAEYEDVPITPTSR 94
           +RA+G     P + A S       D +F+ +QD+Y+  PP+ N   +A  ED+P TPTS+
Sbjct: 51  DRATGANLDCPVDMASSAAATIAEDAHFE-AQDFYIPDPPMFNTTEDAIEEDLPNTPTSK 110

Query: 95  LSTAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDTVAEM 154
            +   SS G KR R+ Y +E+++++R ++ +Q   L K+A WPD ++ ++  RR  V + 
Sbjct: 111 PTIGTSSGGSKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQ 170

Query: 155 LLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLLNE 202
           L   P L  ++ V L+ IL  + K +   L VP   K  F   LL +
Sbjct: 171 LKQIPNLEANDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGK 216

BLAST of Lcy06g012790 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-06
Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 0

Query: 92  TSRLST-AGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLTKIANWPDTQDTREFKRRDT 151
           T R S  A SS+G KR R S++AE+++IMR +V +Q T + ++A+W   +   EF RR  
Sbjct: 165 TGRASVLAESSRGSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFGRRKE 224

Query: 152 VAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKLQFLRGLL 200
           V   + +   L +D++V+ + +L  D + T+  L+VP   + ++   LL
Sbjct: 225 VVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAVPEHARKRYCLHLL 273

BLAST of Lcy06g012790 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-04
Identity = 41/131 (31.30%), Postives = 63/131 (48.09%), Query Frame = 0

Query: 74  PVVNLGAEAEYEDVPITPTSRLSTAGS-SQGQKRSRASYEAEVLEIMRKSVNLQETPLTK 133
           P+ +LG     +D+  T T+R+S   + S G KR R  +  +  +I+R ++      L +
Sbjct: 514 PMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 573

Query: 134 IANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLKL 193
           IA WP  Q     + R  + + L A PELT  +R  LMRIL  +       L VP  +K 
Sbjct: 574 IAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 633

Query: 194 QFLRGLLNERR 204
            +   +L E R
Sbjct: 634 PYCSIILQENR 644

BLAST of Lcy06g012790 vs. NCBI nr
Match: KAA0041444.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-04
Identity = 42/132 (31.82%), Postives = 60/132 (45.45%), Query Frame = 0

Query: 73  PPVVNLGAEAEYEDVPITPTSRL-STAGSSQGQKRSRASYEAEVLEIMRKSVNLQETPLT 132
           PP+ N G     +D+  T T+ +      S G KR RA + A+  +I+R  +  +   L 
Sbjct: 193 PPMYNQGLNMSSDDLMGTRTAWVREHRNVSSGSKRKRAGHSADSGDIIRTLIEYENEQLN 252

Query: 133 KIANWPDTQDTREFKRRDTVAEMLLAQPELTDDERVSLMRILFVDPKMTNMMLSVPPTLK 192
            IA WP  Q     + R  V   L A PELT  +R  LMRIL  +       L VP  +K
Sbjct: 253 HIAEWPALQRQDASETRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLDVPNNMK 312

Query: 193 LQFLRGLLNERR 204
             +   +L E +
Sbjct: 313 YPYCSIILQENQ 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW732.7e-1633.53uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7SWD81.1e-0431.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TDD63.1e-0431.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UXH85.3e-0430.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UPP66.9e-0430.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_022158565.15.6e-1633.53uncharacterized protein LOC111025018 [Momordica charantia][more]
XP_038896380.18.9e-0633.94uncharacterized protein LOC120084641 [Benincasa hispida][more]
KAA0034843.12.2e-0431.30retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041444.16.4e-0431.82retrotransposon protein [Cucumis melo var. makuwa] >TYK24318.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g012790.1Lcy06g012790.1mRNA