Lcy06g012470 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy06g012470
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr06: 16070524 .. 16071507 (-)
RNA-Seq Expression	Lcy06g012470
Synteny	Lcy06g012470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAGGCCAGTGGATTACTTACAAGGAAAGAGTCACTGGTATGATCTCTAAGTTTTTCACAAATCTTTTCTCCTCACAACAGAGTTCGAAAGAGGAGTTAATTTCAGTAGTATCTAGGGTTTTTCCCTCGGTGACAGCAGGGATGAACAGAAAGCTTCACAAAAGCAGATATTGACCAAGCGCTCCAATAATTACACCCATCGAAAGCCTTTGGCCCAGACGGTCTTTCTGGTGCTTTTTTTTTGTTCGTTTTGGCCTACAGTGAGTGCAGAAGTCTACCATGTGTGCCTTGGGGTTTTAAACAACCAAATTTCTCTAGGCCCCATAAATGATACATTGATCACCCTTATCCCAAAGGTTTAGAATCTGAGGCGTCTATCAGAATTCAGACCAATTTCGTTATGTAATGTTGTCTACAAATTAATTTCTAAAGTTATTGTTAGTCGAATGAAGGGTATCTTAAACCATATTATTGCTCCTAATCAAAGCGCTCTTTCATTCCGGGTCGATGTGTGGTGAACAATGCAATTTTGGGATATGAATGTTTACACTCTTTGAAGTCGCGTCAGATTGGTCGGCGAGGTAATGTGGCTCTAAAACTCGATATGAGCAAGGCCTACGATCGGGTCAAGTGGACATTTCTTGAACGTATTATGTTGTGTATGGGTTTTGATAACGCTTGGGTTGGCTTAATTATGTGTTGCGTCTCCATGGTATCTTTCTCTGTAAATCTCAATGGGGAGCGTGTTGGTCATATTTGCCCGGGGGGGCTCCGACAGGGTGATCCCCTGTCCCCTTATCTATTCCTATTGTGTGCCCAAGGTTTATCTAGTTTACTTCTTCAGGCAGAATCAAGGAACCAAATTTCTGGTTTAAGAGTTCCAAGAGGCGGCCCCACTATATCACATTTATTTTTTGCGGACGATAGTCTTCTCTTTTTTCGTGCCATTGAGGCCGATGACGAGACCTGGTCTGTGTAG

mRNA sequence

ATGATTCAGGCCAGTGGATTACTTACAAGGAAAGAGTCACTGTCGCGTCAGATTGGTCGGCGAGGTAATGTGGCTCTAAAACTCGATATGAGCAAGGCCTACGATCGGGTCAAGTGGACATTTCTTGAACGTATTATGTTGTGTATGGGTTTTGATAACGCTTGGGTTGGCTTAATTATGTGTTGCGTCTCCATGGTATCTTTCTCTGTAAATCTCAATGGGGAGCGTGTTGGTCATATTTGCCCGGGGGGGCTCCGACAGGGTGATCCCCTGTCCCCTTATCTATTCCTATTGTGTGCCCAAGGTTTATCTAGTTTACTTCTTCAGGCAGAATCAAGGAACCAAATTTCTGGTTTAAGAGTTCCAAGAGGCGGCCCCACTATATCACATTTATTTTTTGCGGACGATAGTCTTCTCTTTTTTCGTGCCATTGAGGCCGATGACGAGACCTGGTCTGTGTAG

Coding sequence (CDS)

ATGATTCAGGCCAGTGGATTACTTACAAGGAAAGAGTCACTGTCGCGTCAGATTGGTCGGCGAGGTAATGTGGCTCTAAAACTCGATATGAGCAAGGCCTACGATCGGGTCAAGTGGACATTTCTTGAACGTATTATGTTGTGTATGGGTTTTGATAACGCTTGGGTTGGCTTAATTATGTGTTGCGTCTCCATGGTATCTTTCTCTGTAAATCTCAATGGGGAGCGTGTTGGTCATATTTGCCCGGGGGGGCTCCGACAGGGTGATCCCCTGTCCCCTTATCTATTCCTATTGTGTGCCCAAGGTTTATCTAGTTTACTTCTTCAGGCAGAATCAAGGAACCAAATTTCTGGTTTAAGAGTTCCAAGAGGCGGCCCCACTATATCACATTTATTTTTTGCGGACGATAGTCTTCTCTTTTTTCGTGCCATTGAGGCCGATGACGAGACCTGGTCTGTGTAG

Protein sequence

MIQASGLLTRKESLSRQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVGHICPGGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDSLLFFRAIEADDETWSV

Homology

[Close]

BLAST of Lcy06g012470 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.7e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 72  LNGERVGHICPG-GLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISH 131
           +NG   G + P  GLRQGDPLSPYLF+LC + LS L  +A+ + ++ G+RV    P I+H
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 132 LFFADDS 138
           L FADD+
Sbjct: 74  LLFADDT 80

[Close]

BLAST of Lcy06g012470 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 34/121 (28.10%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 21  RGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVGHI 80
           + ++ + LD  KA+D+++  F+ +++   G    ++ +I    S    ++ +NGE++  I
Sbjct: 599 KNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAI 658

Query: 81  -CPGGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDSLL 140
               G RQG PLSPYLF +  + L+  + Q   + +I G+++ +    IS L  ADD ++
Sbjct: 659 PLKSGTRQGCPLSPYLFNIVLEVLARAIRQ---QKEIKGIQIGKEEVKISLL--ADDMIV 714

[Close]

BLAST of Lcy06g012470 vs. ExPASy Swiss-Prot
Match: Q03274 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-05
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 0


Query: 15  SRQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLN- 74
           SR+  R+    + LD+ KA+D V  + + R +  +G D      I   +S  + ++ +  
Sbjct: 129 SRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGP 188

Query: 75  GERVGHIC-PGGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLF 134
           G +   IC   G++QGDPLSP+LF      L  LL   +S   I G     G   I  L 
Sbjct: 189 GSQTRKICIRRGVKQGDPLSPFLFNAV---LDELLCSLQSTPGIGG---TIGEEKIPVLA 248

Query: 135 FADDSLL 140
           FADD LL
Sbjct: 249 FADDLLL 249

[Close]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL
Match: M5W5K8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020282mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.0e-39
Identity = 85/136 (62.50%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 19   GRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVG 78
            GR+G +ALK+DMSKAYDRV+W+FLE +M  MGF   W+ LIM CV+ VS+S  LNG  VG
Sbjct: 929  GRQGYLALKIDMSKAYDRVEWSFLEALMKGMGFAPRWIQLIMECVTTVSYSFMLNGNPVG 988

Query: 79   HICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDS 138
            ++ P  GLRQGDPLSPYLFLLCA+ LSSL+LQAE RN + G+ + RG P++SHLFFADDS
Sbjct: 989  YVIPQRGLRQGDPLSPYLFLLCAEALSSLILQAERRNLLHGVNLCRGAPSVSHLFFADDS 1048

Query: 139  LLFFRAIEADDETWSV 154
             LF RA + D E  S+
Sbjct: 1049 FLFLRADQQDCEQLSI 1064

[Close]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL
Match: A0A2N9H567 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34870 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.5e-39
Identity = 79/136 (58.09%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 15   SRQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNG 74
            +++ G+  ++A+KLDMSKAYDRV+W F+  +ML MGFD+ WV LIM C+  VS+S+ +NG
Sbjct: 933  TKRQGKTAHMAVKLDMSKAYDRVEWDFIRIMMLKMGFDSQWVHLIMQCIQSVSYSIMING 992

Query: 75   ERVGHICPG-GLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFF 134
            + VG+I P  G+RQGDPLSPYLFL+CA+GL++LL  AE+  Q+ GL + RGGP I+HLFF
Sbjct: 993  DPVGYIKPSRGIRQGDPLSPYLFLICAEGLTALLQNAENSGQLRGLSICRGGPIINHLFF 1052

Query: 135  ADDSLLFFRAIEADDE 150
            ADDSLLF+RA  A+ +
Sbjct: 1053 ADDSLLFYRATVAESQ 1068

[Close]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL
Match: A0A6J5TXB8 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS12969 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 81/132 (61.36%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 16  RQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGE 75
           R  GR+G +ALKLDMSKAYDRV+W FLE +ML MGFD  WV LIM C++ VS+S  LNG 
Sbjct: 500 RTHGRQGYMALKLDMSKAYDRVEWNFLESLMLVMGFDRRWVQLIMACLTSVSYSFLLNGN 559

Query: 76  RVGHICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFA 135
            VG++ P  GLRQGDPLSPYLFLLCA+  S L++QAE    + G+ + RG PT+SHLFFA
Sbjct: 560 PVGYVIPQRGLRQGDPLSPYLFLLCAEAFSGLIVQAEQNGTLHGVSLCRGAPTVSHLFFA 619

Query: 136 DDSLLFFRAIEA 147
           DDS LF +A ++
Sbjct: 620 DDSFLFLKASQS 631

[Close]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL
Match: A0A2N9EX83 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7086 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 20   RRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVGH 79
            ++G +ALKLDMSKAYDRV+W FLERIML MGF  +WV +IM CV  VS+SV +NGE  G 
Sbjct: 896  KQGYMALKLDMSKAYDRVEWAFLERIMLTMGFSESWVSMIMECVRTVSYSVLINGEPKGF 955

Query: 80   ICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDSL 139
             CP  GLRQGDP+SPYLFLLCA+GL++LL +A    +I G+ + RGGP +SHLFFADDS+
Sbjct: 956  FCPTRGLRQGDPISPYLFLLCAEGLNALLAKATLSKKIQGISISRGGPKLSHLFFADDSV 1015

Query: 140  LFFRA 144
            LF RA
Sbjct: 1016 LFCRA 1020

[Close]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL
Match: A0A6J5TM79 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4240 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 81/132 (61.36%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 16  RQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGE 75
           R  GR+G +ALKLDMSKAYDRV+W FLE +ML MGFD  WV LIM C++ VS+S  LNG 
Sbjct: 152 RTHGRQGYMALKLDMSKAYDRVEWNFLESLMLVMGFDPRWVQLIMACLTSVSYSFPLNGN 211

Query: 76  RVGHICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFA 135
            VG++ P  GLRQGDPLSPYLFLLCA+  S L++QAE    + G+ + RG PT+SHLFFA
Sbjct: 212 PVGYVIPQRGLRQGDPLSPYLFLLCAEAFSGLIVQAEQNGTLHGVSLCRGAPTVSHLFFA 271

Query: 136 DDSLLFFRAIEA 147
           DDS LF +A ++
Sbjct: 272 DDSFLFLKASQS 283

[Close]

BLAST of Lcy06g012470 vs. NCBI nr
Match: XP_019168351.1 (PREDICTED: uncharacterized protein LOC109164054 [Ipomoea nil])

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 84/126 (66.67%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 19  GRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVG 78
           G  G VALKLDM+KAYDRV+W FLE IML MGF N WV L+M CVS V++++ +NGE VG
Sbjct: 47  GNLGWVALKLDMAKAYDRVEWGFLEGIMLAMGFSNQWVRLLMLCVSTVTYTILVNGEAVG 106

Query: 79  HICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDS 138
            ICP  G+ QGDPLSPYLF+LCA+ LS LL QAE+   I G+RV RG P ++HLFFADDS
Sbjct: 107 SICPTRGILQGDPLSPYLFILCAEALSVLLQQAEASGDIHGVRVARGAPDVTHLFFADDS 166

Query: 139 LLFFRA 144
           LLFFRA
Sbjct: 167 LLFFRA 172

[Close]

BLAST of Lcy06g012470 vs. NCBI nr
Match: XP_019156592.1 (PREDICTED: uncharacterized protein LOC109153209 [Ipomoea nil])

HSP 1 Score: 171.8 bits (434), Expect = 4.6e-39
Identity = 82/133 (61.65%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 19  GRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVG 78
           G +G  ALKLDM+KAYDR++W FLE ++  MGFDN WV L+M CV+ V +++ +NGE  G
Sbjct: 529 GLQGWAALKLDMAKAYDRMEWAFLEGMVRVMGFDNGWVDLLMLCVTTVKYTILVNGEAAG 588

Query: 79  HICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDS 138
            I P  G+RQGDPLSPYLF++CA+GLS LL QAE+R  + G+RV RG PTI+HLFFADDS
Sbjct: 589 LIKPTRGIRQGDPLSPYLFIICAEGLSILLQQAEARGDVHGVRVARGAPTINHLFFADDS 648

Query: 139 LLFFRAIEADDET 151
           LLFFRA E + +T
Sbjct: 649 LLFFRANEHEAKT 661

[Close]

BLAST of Lcy06g012470 vs. NCBI nr
Match: XP_034696393.1 (uncharacterized protein LOC117922369 [Vitis riparia])

HSP 1 Score: 171.4 bits (433), Expect = 6.0e-39
Identity = 83/133 (62.41%), Postives = 101/133 (75.94%), Query Frame = 0


Query: 19  GRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVG 78
           G+ G+VALK+D+SKAYDR++W +L+ IML MGFD+ WV  IM CVS VS+SV++NGE VG
Sbjct: 566 GKVGDVALKIDISKAYDRIRWDYLKAIMLRMGFDSKWVEWIMLCVSTVSYSVSVNGELVG 625

Query: 79  HICPG-GLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDS 138
              PG GLRQGDPLSPYLF++CA+GLSSL+ QAE R  I G R+ R  P ISHL FADDS
Sbjct: 626 PFSPGRGLRQGDPLSPYLFIICAEGLSSLIKQAERRGAIHGCRICRSAPRISHLLFADDS 685

Query: 139 LLFFRAIEADDET 151
             FFRA   +  T
Sbjct: 686 FFFFRADAIESST 698

[Close]

BLAST of Lcy06g012470 vs. NCBI nr
Match: XP_019183755.1 (PREDICTED: uncharacterized protein LOC109178674 [Ipomoea nil])

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-38
Identity = 81/133 (60.90%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 19  GRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGERVG 78
           G +G  ALKLDM+KAYDR++W FLE ++  +GFDN WV L+M CV+ V +++ +NGE  G
Sbjct: 426 GLQGWAALKLDMAKAYDRMQWAFLEGMVRVLGFDNGWVDLLMLCVTTVEYTILVNGETAG 485

Query: 79  HICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFADDS 138
            + P  G+RQGDPLSPYLF++CA+GLS LL QAE+R  I G+RV RG PTI+HLFFADDS
Sbjct: 486 LVKPTRGIRQGDPLSPYLFIICAEGLSVLLQQAEARGDIHGVRVARGAPTITHLFFADDS 545

Query: 139 LLFFRAIEADDET 151
           LLFFRA E + +T
Sbjct: 546 LLFFRANEHEAKT 558

[Close]

BLAST of Lcy06g012470 vs. NCBI nr
Match: CAB4268750.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-38
Identity = 81/132 (61.36%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 16  RQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWVGLIMCCVSMVSFSVNLNGE 75
           R  GR+G +ALKLDMSKAYDRV+W FLE +ML MGFD  WV LIM C++ VS+S  LNG 
Sbjct: 500 RTHGRQGYMALKLDMSKAYDRVEWNFLESLMLVMGFDRRWVQLIMACLTSVSYSFLLNGN 559

Query: 76  RVGHICP-GGLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISHLFFA 135
            VG++ P  GLRQGDPLSPYLFLLCA+  S L++QAE    + G+ + RG PT+SHLFFA
Sbjct: 560 PVGYVIPQRGLRQGDPLSPYLFLLCAEAFSGLIVQAEQNGTLHGVSLCRGAPTVSHLFFA 619

Query: 136 DDSLLFFRAIEA 147
           DDS LF +A ++
Sbjct: 620 DDSFLFLKASQS 631

[Close]

BLAST of Lcy06g012470 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-14
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 72  LNGERVGHICPG-GLRQGDPLSPYLFLLCAQGLSSLLLQAESRNQISGLRVPRGGPTISH 131
           +NG   G + P  GLRQGDPLSPYLF+LC + LS L  +A+ + ++ G+RV    P I+H
Sbjct: 14  INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73

Query: 132 LFFADDS 138
           L FADD+
Sbjct: 74  LLFADDT 80

[Close]

BLAST of Lcy06g012470 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-06
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 13 SLSRQIGRRGNVALKLDMSKAYDRVKWTFLERIMLCMGFDNAWV 57
          S+ R+ G +G + LKLD+ KAYDR++W +LE  ++  GF   W+
Sbjct: 39 SMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDTLISAGFPEVWL 82

The following BLAST results are available for this feature:

BLAST of Lcy06g012470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92555	7.7e-13	50.75	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]
P11369	5.7e-08	28.10	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
Q03274	3.5e-05	33.07	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fra...	[more]

BLAST of Lcy06g012470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5W5K8	1.0e-39	62.50	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020282mg PE=4 SV=1	[more]
A0A2N9H567	6.5e-39	58.09	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A6J5TXB8	1.1e-38	61.36	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A2N9EX83	1.1e-38	64.80	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A6J5TM79	1.4e-38	61.36	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]

BLAST of Lcy06g012470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_019168351.1	2.7e-39	66.67	PREDICTED: uncharacterized protein LOC109164054 [Ipomoea nil]	[more]
XP_019156592.1	4.6e-39	61.65	PREDICTED: uncharacterized protein LOC109153209 [Ipomoea nil]	[more]
XP_034696393.1	6.0e-39	62.41	uncharacterized protein LOC117922369 [Vitis riparia]	[more]
XP_019183755.1	1.0e-38	60.90	PREDICTED: uncharacterized protein LOC109178674 [Ipomoea nil]	[more]
CAB4268750.1	2.3e-38	61.36	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lcy06g012470 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	5.5e-14	50.75	RNA-directed DNA polymerase (reverse transcriptase)	[more]
AT4G20520.1	9.4e-06	43.18	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 20..144 e-value: 7.6E-19 score: 68.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..153 score: 9.142104
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 18..145
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 18..145
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 18..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy06g012470.1	Lcy06g012470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity