Lcy06g011750 (gene) Sponge gourd (P93075) v1

Overview
NameLcy06g011750
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr06: 14109251 .. 14123558 (+)
RNA-Seq ExpressionLcy06g011750
SyntenyLcy06g011750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGTTCGTCTAGAGCTCCTAGACACACGTGGACGAAGAATGAGGACACGAAGCTTGTGGAGTTCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTTGGCAACTGGAACACTTGATGAGGGAGAAACTGCCTGGACCTGCATTGAATCCAGGGTTCGCACCCGAAAGAAACAATATCAAGCAATCGCAGAGATGATGGGTCTTGGATGCAGTGGCTTTGGCTGGAACGATGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTTGACCTGTGGGTGAAGGTAAGAACGTGTGGGTCGTGTTAACTTCTCATATTTTATTGATTTCTAACATACACTTTTGGGTGAATGCAGACTCATCTTATCGCAAAGGGCTTGCTAAACAAGCCTTTCCCGCATTTCGAGGACTTGGCATATGTTTTTGGGAAGGATCGAGCCACAGGAGGGGTGTCGGAGGTGATGGCAAAGATGGGTTCCATCGTGCCAGATGATGCAGTAAACCTCAGTGGATCCCCAGACAACGACATCCCCATCCCGCCGTTCACCATGCCTACTGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCAGACAGTCAAACTTACCCAATCGGAAATTCGTCACGTGGGAGTAAGAGGAAGAGATCTGGGTCTAACATGCACATTGCAGAAGTTGTCAGAGAGGGAATGGCCTCGTATACTGATAACTCTCCAAAAGGGAGTTATTTAGACCTTATTTCTGTATTGATTTGTGTGTCTTTTGTGCTAAATAGGGTTGCTTTAAGATAAATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTTGTGCAGAATATAGTGATGAGCGACTTGAGGGAGCAAAATTTGTGCTGCAGCAAAGTAGGGAGCAAAACTTCCACGTCACAGCTCGTTAGCCAATTTAATGAACTGAAATTAGTTAAGCTATTCTCGGATTTGAGGAGCAAGGAGAGCCATCCACATGTCTAGGTCAACCGAATTTAAGCTTGTCTTCACTCTATAAAAGGGGATAGCCACCCAAGTCAAAGACATTCCACTCTTGGGGAAGAGATCATTTCTCATTTCCATTCTTGGGAGCCGAATAGAGGAGAAAGATTGGAGACCTACAAGAAGACCATCAATTACGAAGTTGATCAAGGAAATTCGTATTTTCTTGTATTGTTTTGTAATTATGGATGCATTTACTCAGATTGTAACGCGTGTTGCTATGCACTTTATGAACTAAGTAACTTTAGGTGTTGGTTAGGAAATATGTAATTGTCTTGCTTAATCTCTATGCAATATACGTTGATTTGATGCATCTTGATTATTTGTTGTGCTCATTTACATTTTGTGTCAGCTTGGCCAGCCGGTATGAATATCACTTCCTAGTTTCAGGGATGATTTGGGGAGTGTGTGGCATTTAATCACACTAGATCATTGTGTATTGGTGAACTACAGTGACTGAGCTAGGGATAGCCAGTTGCCTAGTGCTTGATCGGTAGTGTGTCATTGGAGTTGAAACATATTCTAAAAAATCCAGAGTTCCGAGAGGATCCTGCTAATAAGACTGCAAGAGTTTTGCCTGATCAATAATATTTCTAGAGCATCTTTTAAAACAATTACTAAATCCTGACTAGCACTTGTTTCTAATCTGTCTACTTTATTTGTTTACTTTCTGTTCCGTCATTTCTTTTGCTTCGGCATCCTATAAAAATCAATCATTTTAACCACTTTTGAAACCATTGAAAATTTATACAAAATAGATAAAGTGAGAGCTAATTCAGACCTTGGATTCGATAAATACTTATTACTTGCTGCGGATTGTGTTTGCTTGGATAGAGTTCTAGAGTCAATTTACATCTTATTTTTACTCACTCTAGGAACCCAACATATACAGAACAACTAAAGTCCATTGCAGAGTGGCCGAAAGAAAAACGTGCCACAGAGGCCGACTTCCGAGATAAAATTGTCACCCACTTGATGGAGGTACCCTAACTGGAGAACCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAAGAACATGAAAGCGACAGAGAGCTTCTTCTCCACTCCCGCTCCTCTGAAGTTGGAGTATTGTGAATACCTTTTGGAAAAACACAGTTGACCCACCACTCCTCAACCAATGTGCTGCTTCACAATTATCTTTGCTTTCAAGAATTTTCTATCTTTGTACTCATATATTTCTAGGAAAAAATATTTTTGTGCCACCATGGTCGTGGCCCATAGAAGACAACATTACCTCCCAGATGTATTTTTTTGTGCAACTGTAGGGAGTTAAATACTAGGTTGTCTTTCTACATATACAAATATGGAGTTTTATTACATAATTTCTTTGTACATAAGCATTTACCATTTTTACGTTGAAAATACAGAAATGAAACAAATATGGTTTTCCAATATGAAATCATAAAATAACTTCTTTTGTGAAAAAATCATGACCCTAAAACAAAGAAAATCAACTCTTACCTTAGGTTATTTTTGTTTCCTTTTAAGTTAAACACATCATTTAACTCGTATACCCAATACTTTATTTTTTTTACAACTGAATCCAATCAATTTTTTTATTGATATTTGCAAAATATAATATTTGACATACAAAGTTGTATGAGGAAAATAAACAAAAAAAAAAGTCAGGAAAAAAACAGTCAACTTGAACCTTTGATTCATAATCTCATGTTAAACATATTAGCAATCCAAACACAGATTATTTTAGCCCAGACTAAAATAATTTGCATCCCAAACACAGATTATTTTATCCCAGACTAAAATAATTTGCACCTCAAACACAGATTATTTTATCCCAGACTATAATAATTTGCACCCCAAACACAAATTATTATAACCCCCAGACTATTATAACCACCAGATATTATAACCAATTCAGCACCCCAAACAACCCCTAAATGTGTATTTTAACCATAGATTTATCATCACATTACCAAGAAGAGGATGAGTTGGAATTTTTTTTACTAGAAGTATACCTTGATTTGCATCTTCGGAGTTGTTTTTCAATATTCATCACAAGGTACACCACATCAATGTTTAAGCCATTGAAAAAGTATGTCATGGTGTTCTCCTCATTCTCATTTATGCTTAATTTTTTGAACATTTTCATCTCCTTGCAATAATCATCAACACTCCTGCTCTCGTGACATAGAGCTTGAATTTTTTGTTGCATAATCTCTCAAGTAATGTTTCGATATGAACCACTTCCTCATGAGCTCTTTCAATTCTAGCCACATTTCCACTCGACCATCTTGATATCTTCTTTTCTTAAAACACACCTTATCTCACCAATTTTGTGCATAACTCTAAAAAATTTACCATAAAGATACCTGACTTTTTCTCTTAAATGAGGTTGTTGCTATAGAAAATGTTTTTAGCTTCACATGCTCCCATTTGATCTTAATGTTGTCAAAGCCTCGTTTTCCATGGTGGTTTTCTCTTCTACTTGGTGGCCTTCTATTGTAGAAACATCTTCTTCCCTTCAAGCCTTAACGTGTTCTCTTTTTTTAGGTACATCTATAATAGGGTCAATATCATCATCATCTTCTTGCTCTGAATCCTTTCCCTCTTCTAAGACCTCTTTGACTCACATCTTTGCTTGAGGTCTATCCCTAGTTTGAACTTTTTGTTTAACCTCTCTAACCTCTCTTTGATCATGGTTTTCACATGTTGCATGACTGATGCGGGTTGTGACTGAAGGTGGATGTAGGAATAAGATGGAAAATAATGATTAATGATGAATTCAATCAAGCTAAGTGTAAGTATACACTATCGCATATAGTAATAAAAAAACTCTTGAAGTATTCCAAAAGTATCGATCCCACAGGGACTAATTTAAACACATATTTGAAGAAGAAACTGCTCTTAAATTGCAAAGTAAGTAACCAAGTAAAAATAATTGATGATGGGTGATAACTCTCCAAAAGGGAGTTATTTAGACCTTATTTCTATAGTGATTTGTGTGTCTGTTGTGCTAAATAGGGTTGCTTTTAGATATATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTTATGCAGAATATATTGTTGAGTGACTTGAGGGAGCAAAATCTGCGCTGCAGCAAAGCAGGGAGCAAAACTGCCACGTCACAGCTCGTTAGCCAATTTAATGAACTGAAATTAGTTAAGCTATTCTCAGATTTAAGGAGCAAGGAGAGTCATCCACGTGTCTAAGTCAACCTAATTTAAGCTTGTCTTCACTCTATAAAAGGGAAGAGCCGCCCAAGTCAAAGATATTCCACTCTTGGGGAAGAGATCATTTCTCATTTCCATCATTGGGAGCCGAATAGAGGAGAAAGATTGGAGACCTACAAGAAGACCATCAATTGCGAAGTTGATCAAGGGAATTAGTATTTTCTTGTATTATTTTGTAATTATGGATGCACTTACTCAAATTGTAAAGTGTGTTTCTATGCACTTTATGAACTAAGTAACTTTAGGTGTTGGTTAGGAAATATGTAATTGTCGTGCTTAATCTCTATGCAATATATGTTGATTTGATGCATCTTGATTATTTGTTGTGCTTATTTATATTTTGTGCCCGCTTGGCCAGCCGGTATGAATATCACTTCGTAGTTTCAGGGATGATTTGGCAATTAATCACACTAGATCATTGTGTATTGGTGAACGCCAGTGACTGAGCTAGGGATAACCAGTTGCCTAGTGCTTGATCGATAGTGCGTCATTGGAGTTGAAACATATTCTAAAAATTCCAGAGTTCCGAGAGGATCCTGCTAATAAGACTGCAAGAGTTTTGCCTGATCAATAATATTGCTTGAGCATCTTTTAAAACAATTACTAAATCTTGACCAGAGCCTGTTTCTAATCTGTCTGCTTTATTTGTTTACTTTCTGTTCCGTCATTTCTTTTGTTTCAGCATTCTATAAAAATCAATCATTTTAACCACCTTTGAAACCATTGAAAAGTTATACAAAATAGATAAAGTAAGAGCTAATTCAGACATTGGATTCGATAAATACTTATTACTTGCTGCGGATTGTGTATGCTTGCACAGAGTTCTAGAGTATATTTACACCTTATTTTTACTCACTCTAGGAACCCAACAATGGGGTTTTTAGAAAATAATAAAGCAAACAATCAAGAATAAACAAACAATAATAAAAACGAGGAATTCAGTCAAGCTTCAACCGTAAGGCAAATAACTCTAATAATAGCTTATTTAACCTAAGTCTAGATATGCATTGGGCCAGGTTTAACTCCTATTTGGCCTTGCTCCCAAGAACTGTTAGAAGACTAAGCAAGTACCGTTATGCACATTTCTGTGACTCGACTCCGACATAGATTATTCATGCATGCAACCTATAACCCTATAGTATTTATAAGTGATCATCCCCTATAACGGGGAATACACTCTTTCGAGCCCTTTCTCCTATATCACCTTTATGAGAACCGATATTGTTTGACCATTTCGGTACCAAACTCACATACCATGCTAAGTCTAAGTGATCAAGTTATACTCAACAAGATTGGAATGATAATCAATAAAGGATGACATGCATAAATAGAACTTAGGTAAATAAACAACTTTCAAGTTATTCAATCCATAAGGGAATTCACTAAACCGAACCCCTCAATTGAATTTAGCTACGCATGATGGATAAAAATGCAAACAAATAAATTTCCATTGAATAAATAAATGAGAAATACAAGAAATAATAGAAAGAAATAGGTGCTAGAAGATATGGTGCAGTAGCTAGAACTAGGGTTTTTTCAATTTATCCAATCCCTCTAGAGTTCTCACGACACTTTACTCTTCCTTTACAAGATGGAAATATGGTGAAATCTCTATAAACACAAAGGTTTGATGTCTAACTAAGGTTAGAATTTCGTCATCTAGCAAGGACCTCGGGCATCATGACTCATAGGTGTCTACTAGGGTTCTGTCACTACTCCCTTCTTCCCAGTGAGTTCTGTTTGCTTTTGCCTTCGAATCATGGCCTTTTATAGCGTGGGGAGTGGTTGAGGAGTGACGAAAATGGTGCTTGCAGGTAGCCCAGTCAGTTTTGGAGTCAAATCAGCCGATTAGATGCGTAGAAAGCTCGTTCAAAACGACCCGCGACAGACTCGAACTTTTTTGTTTCAGCCCAGAAATGCAGTCGCATTTCATTTTGCCTTGACAGAAATGCGGTCGCATTTGAATAGCATTTCTCTGTTTTCCTCTGTTTTTTGCAAAACACCAAAATTTGATCAAATTCATATAAAATAAGTTCTTTTAAGCACATATAAGCATGATTTGACAAAATATGACTCCCTAAGACTCATCTATATTGTAGATAGTAAATTGTAACTTTTGACCGAACATTAATAAAATGATGGATTGTTCATTTATATTGTTTGTATTCAGTAATCTTGTCTTATTAACCCTAATCCAATAAACTAAACATCCTAGGCTGATAGTATGAGGCTTGAACTAGTATGTAGGGACATACGTGGATCAATGTTCAAAATACAGCCTAAAGGGTCTATAGTATAGGGTTGGTTGGGTACCTTATCCTGGTGACACTATGGATACAGCCCGCTTTGTATTATGATACAAACGTAATGATCCAACACTTTCATGTAGTTGACATGCGAGTGGGGGTGTCCTATGCAATGAGTTTGCATAAGATCGGACCGCGAAATAGTTAACCACTAGCTTTAACACCGTTAGTTAGTTTGGTTTCTATTTCACTAGGATGACCTAGGCAACTTGGTCTCAATCCTGAGTGGATTATGGACTCCTGTCCGTGAGGGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCTTGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCATTCCTTCCCGACTCTAGGGTAAGTAGAGGTTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCATGCCCTCTCTATGGCACGAGAGGGACTTCTGTTTATTGGTTGGACCTCAAACAGTTTGTTCATTAGAGGAGCATTGGAACTTAAGGATAAAGAGGTAGCCCAGGGGTAAAAGGGTAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTGACTTGCTGCTATTGGTCGATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTGCAATTGTGGTTCTATAGTGGAGTGAACCATAGTTAACGAACATTGATTAACTTGGTTAATGAGTTTAACCAATTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTGATAGCTCAAATAAGGTGTTGAGGTTATTTTCTAAGGAAGATTTGTATATTCGAAGGTGTTCGAATATTAAGTTTAAATATGAATTTGGTTCATATTGAAACTATAGGTTATAATTAATGCACATTAGATGTACATTAATATTATAGTTTAGTTGAGAGAAATATAATTAAATATATGATATTTAATTATATTAATTAATTATTGAATTAATTAATCGTTAGTATTAATTTAATTTAATTTAATTGGGATTTAATTAAATTGCATTGAAACTATAGGTTATGTGAAGGATAATCATTTAAATGTATTTTAAATGAGTTGGTTAGTTAATTATGAATTAATTAACCTTTAATTTAATTAATTTTATTAATTAATTATATTATATTTTTTAAAATTCATAACTGATATTTGATCAGTTAGCAGGTCGTGAGTTTTGAACCGCTTTTCTCTCCTTCACGCCTAAAATAGTGGGAGTTCTCTGAGTTTTTGGCAGTTCGTTCATTTGTTGGTTGAGGCTTACGAAAAACTCGAGTGTGGTTCCCAGAAACTTTGTTCTCTCAAAAATTCCCTTAGAGAAATTTGTGCTCCCACAAGCCTACTCAACATAACCTTAGGAGTTTATTGGTGTAGCTTTGTGGTGGTGTTCGTGGAGACAAATCTAGCGAAGAAGATCAAACGTGGTTGCTGTAATTTTCTGTTTTCGGCAAAGAAATTGGCGAATCGATCAAGAATTTCAAGCAAAGTAAGGTCTTCTTAACTCTTGATCAATAGGATCATCTTTAGTATTTATCTAGGGTGATTCCTATTGAAAATTGCATGTTTTATAGTCGCTTTTCAGTAGTTATAATCTTGTTTTACTGCTGTGATTGTTTTTTTCGTCGTATTGGTTTTCCAATCGACGTTTAGATCGATAAGGTTCTCTGATCGTTTCCGCTGCGCTAGGGCTTTAATCCCTACAATTGGTATCAGAGCCATATCGATTTTTAAACATCGATTTGGGATTTGCAATTGGCTTTGAATGGTGGGATTTTGCATAATGTATGATTATGGGTTTGCGTATAAATGTTTATGATTAATTTGGCCATAGATTTACTGTTTTTGAATTGTTCAATTGTAAAGGCCCCTGCGTTTTGGGCAAGTTATGTAAATCAAATGTTTCTGTAAGTCCGGGTCTAGAATAGGATTTTTTATGATGAAAATCGATCAAAATCGCTGTTGTTCGAGGCCAAATTGCAGATGAATCAGTGCTGGAATTGCCCAGAATCTGCCTCCAGATATCGCGAAAACTTGCGGCCGGTTAGGGTTTCGTGAGGCGTAGCTGAAGGTTATTTGGCGGTCCGATTCGATCGACTGGGCTGGTCTGGGGCCGGTCTGGCCCGGTCCAGCGCGATTCAAGCTTGGTTTGGCATTTTGGGGTCCGGTTCGAAGTGGTTCGGGTTGGTTCGGGCGGACTAGGTTCTGAAGCTGCAGAAGCATATTTTTAGGATACAATAGCTTAAATTAATGTAAGTTATATGCTTTATTTTATCCTAGGGGCCAATTAATCGGTTTATACGCTATTTAAATGCTTTATGGATGTCATTTAGAATTAAATCCCACCTTAGGTTATAAAGCATGCCCATGCATTTATGTATGTTATAATTAGATTATAATATATGATTGAAATGCATGGTTTATTTTCATGGATGTTTAATATATAGTTGAGTTATATTAAAATCATGAAAATGGAAAAGCATGATGCATGCAATTACTTAGTTAAATATAAATTGTTATATTTAATAAAATTGTTTGCAGCATGCCACTTTGATTTACCATGGTTGACAATATTTTAATAGTTAATTTATTCATAATGGAAATCAAAGTAGCATTGAGCATGAAACATCCATAGGTTAATATAATTGTTATATTAAAATTCATGCAATGCAAAGTTATATAGTTTATTTTTAATTAACTTGAATATGATTGTTAATTGCTTTTAAACTATAGTATGCATGATTATAGGGCTAATCATTAAAATTTGAATAGTTTAAAATTAATGATTAGAAACCGTCAATCTATAATCAAGATATGCATGCTCACATAGGACCATAGGTTAAAATTAATTAATTTTAATGAGTTAAAATTAATTAGACCTAAGGTCACATTCTAATATGATTAGAATAATTCTTACTTAGTTTAAAATAGCTTTAATGAACTAAGTAGGACCAACATTCCTATGATTATAAGGGAACTCTACCAGTGATGTTCTATCTAAGGTTGGGGGTATTTAAGTTGACGGTATACGGAACACCTCCTACTTGGGAACTGATCTGGATCACCGAAGTTGAATTAATCATTGGTTAATGTTAGAATAATGTCACTAGGTTTATTAAGTTTGTTTAATTCACCTAGACGTTAGATCTTATTATAATAGTTATAATAGGACTAGATTTAGATAAATGACTTAGCCAGATTTATCTAGGTTTAATCAAACCCTAAAATATTCGATAGGTTACTTTAGTGGGAGGAAAATTACAAAAATTTATTTAAATCGAGTTTTGCCCCACGTCCCTATATTCACGACGTGAGATCCATGCTCGGCTTCGTGTCGTTTTAGCGTGGCCTCCCTTCGGAAAGTGTTTGCATGGATCAATAACAAGGTGAATGGGGAAAGTGACCATAGTAAGTGGGAGCGGGACACGTGTCAACGTATCCCTCGGTCTCCACCCCTAGGTCACAACGTGAGATTCCTATGATCCGCCTGCGTGTTGCCCTGAAGCAACCACCTCTTCAGAGGGCCTGATCATAGGATTCGGAACACCGTGAACTCCTGAAAATGATAGGATCACTTAGGCTAATTACCAACAGTTGTCTTTCCTAACGGTAGCCTGTTGGTGCGTGCCTTTGAGATCTGAAAGTGGGAGGGTTACACTTACGAGGATAAGTTAATTTGTTAACAAATCCTTGACCGAACAACGGTGGTTAACGTCTATAGGAATATGAGTTATTCTGGAATTAGAGTTGACTGAGAAGTGTCTCATTTTAGAGGAGGAGCAACTGATCACCCTTCGGTGACTGTTCCTCTAAACCTCTAAAACATCGTTGCCAAACACAATCAATAGTTTTATTAGGGTTCTTTGATTGATTGTTTGCAAAATTGAATGGATTTGTGCAATTGTTTGTATTGCTTGTGTGATGGGTTAAGGCAAAGATAACTAATACGGTCAATTGTTTGTTTTTCAGCAATGTCTTCCTCTATAATCGCATTACTCAAAAACGAAAAGTTAACTGGCGAAAATTTCCCTACGTGGAAATCAAACCTGAATACGATTTTGGTTGTCGAGGATCTCAGGTTCGTCTTGACGGAGGAGTGTCCTCCAGTTCCTCTTCGCACTGCCTCTCAGGCAGTTAAAGACGCTCGTGAAAGCTGGACAAAGGCCAACGAGAAGGCCCGAGCCTACATCCTGGTCAGCTTGAATAAAGTCTTGGCCAAGAGGTATGAGATCGTGGAGACAACAAGGGAAATTATGAATTCCCTGTAGGAGATGTTTGGACTTCCGTCCTATCAACTCCACCACAATGCTTTGAAGAATGTCTTCAACGCCCGTATGCAAGAGGGGCATCCTGTTCGGGAACATGTTATCGACATGATGAACCAGTTTAACATTGCAGAGGCGAACGACGGGGTCGTCTGCAAGCGGAGTCAGGTTGCTTTCATACTACATTCGCTTCCTCCTAGCTTCATGTAGTTTAGGACGAATGCTAGCATGAACAAAATACAATTCAACCTGACCACCCTCCTAAATGAGCTACAAATTTACGAGTCCATGCTGAAAAGCAAGGGCAAAAGTGTGGTGAAATGAGAGGCCAATGTGGCCCGTTCCATAAAGAAGTTCCTGAAGAGTTCATCCTCAGGAACTAAATTTGTACCTTAGGCTTCTTCATCGAAGCAAATTCAAAAGAGGAAGGGTGACAAGGGGAAGGCTCCTGCTCAGGCTGTTCAGGGTAAGGGAAAGGCCAAGGTCGTGGCTGACAAGGACAAGTGCTTCCACTGCAATGTGGATGGTTACTGGAAGAGGAACTGCCCTCGTTACCTTGCTGAGAAGAAGAGAGAAAAGGAAGGTAAATACGATTTACTTGTTTTAGAAACTTTCCTTGTGGAACATGATGAGTTTGCCTGGATATTAGATTCGAGAGCCACTAATCATGTTTGTTCTTCTTTTCAGGGAAATGATTTCCAGCAGCTGGAAGATGATGAGATGACTCTCAAGGTTGGAACGGGAGAAGTCATTTCAGCAAGAGCAGTGGGAGCTGCTAAGTTGTTTTTTAGGAATAAGTTTTTAATTTTGGAGGACTTGTATTTGGTTCCTAAAATTAAAAGGAATCTTATTTCTCTTTCTGCTTTATTGGAACAAAATTACTCTATTTCTTTTATGATTAATGAAGCGTTCATTTCAAGAAATGGTGTTCTTATATGTTCTGCTAAGTGTGAAAACAACTTATATGTGTTAAGACTTATCGATACTAAAGCTATTTTAAATCATGAGATGTTTAAAACGGCTGAAACTCAAAATAAAAGGCAAAAGATTTCTCCATTAAGTAACAATACATATCTTTGGCACTTACGTCTTGGTCATATTAACATCAATCGAATCGGTCGTTTGGTGAAGAATGGACTTCTAACCGATTTAGAAGATGATTCTTTACCACCCTGTGAATCGTGTCTCGAGGGTAAAATGACTAAGAGGCCTTTTACTGGAAAAGGTTATCGTGCCAAAGAACCTTTAGAACTGATACATTCGGATCTTTGTGGTCCAACGAATGTAAAAGCTCGTGGAGGTTATGAATATTTCATCTCTTTCATAGATGATTATTCTTGATATGGTTACTTATACCTAATGGGTCATGAGTCTGAAGCTCTTGAAAAGTTTAAAGAGTTTAAGACTGAAGTAGAAGGAAAAAAAGGGAGAGAGAAAGAAATAAAAAAATATTTAAATAATAATATTTTTATTATTTTAATATATTTTTATTTAAAAAAATTAAAAATAATTTTTTTATTAAAATAATAGTGTCACGTCAGGAAACCGTTATGATTTAACGGCAAAATGGATGACAGGGACCAAATTGCTCCTTATCTCAAACCTCAGGAGTATATTTGTTGAGTTTGAAACCTCAGGGACTAAAGTGTAACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTCTCCCTAAATTTAATTTTGGATATGATTCAAAATTATTTTATGAGAGAGTTAAATATTTGAAGGAGTTCAAATATTAATATGAATAGGATTCATATTAAACTATAGTTTAAAAATTAATGCGCATCAGATGTACATTAAACTATAGGTTATGTGAGAGATGAAAAGATTAATTAAATTGGATTTAATTAACCAATTATAAATTATTAACTAAATAAGATTTAATTAATATTAATATTTATTAATTTAATTAATTTATTAAATTAATATAATAATAATAATGGTTATTATTATTATTATTTGTAACTTCTTGTAACTCCAAGAATGGGGAGTTACATACATGTGAGTTACAGGAGTGGTGGGATTTTGTAACCACACCCACTCTCTCACACATATATATACATGTGGTGTTCTTGGTTTTCATCAATCTTCCAAGAATCTCTCTAAGACTTCTCTCAAAAAGAATTCTCACAAAAGTGTTTTGTGGATTCTTCTCCCAAGATCAAGAAGGATGTCACAATCCTTGGCCTCAAGCACTCAGAGAATAGGGAGGTTTCCAAGTGGTGGTGTCCCAAGAGTGTCTTGTGTTGATCGCTGAAAACTTGTGTTGGAGTTGGTGTTTTTTTCTGAGTCGTCAACGAAAGTAAGTTTCGCTAACGTCATCTTCGTAAATTCACCAAATTCTAATATGCATGCTTAACTTGTTAGAATTAATTCAGTCGAAAGAGTTTTATGAAATTATATTTCTATTTTTGCCAACGTATTAGTTCTTCATTTTGAAATTAAAATTCGAGTATGATCTTGTACATTTCCACTGCGTGGGGCTTTTATCCCTTCACAATCCAAGAAAACAACATTGGGAGGCAGTCAAGTGCATCATGAGATATTTGCAAGGTACCACCAGTTTGAAGCTCACTTTTGGAAGTGGAAAACCAGTGTTTGTCGGTTACGCTGATTCAAATATGGCAGGTGATCTAGTTAACCGAAAGTCCACTTCTGGCTATTTGATGATGTTTGCAAGTGGTGCAGTGTCTTGGCAGTCAAAACTACAGAAGTCACTTTCTACAACTGAAGTAGAATATATTGCAGCAGTTGAAGCTTGCAAAGAGATGTTGTGGATGAAACGGTTTATACAGGAGCTTGGCTTCAAGCAGCAACGGTATGTGATATTCTGCGATAACCAAAGTGTTATTCATCTTGGTAAGAACTCTACATCCAGAACTAAACATATAGATGTGAGGTATCACTGGATGAGAGATACATTGAATGATGGTTTGTTTGAGCTCGAGAAGATTGATAGGCGTGCACTATGACACTACTCGAGTGCAAGTATACACTATCAAGTAATAAAGTGGAAAGTATTCTGGATATCGTACCCAAGGGAGATGGTGACTAGTAAAAAAAACACAAGATTATTATGTAAAAACGGGAACCTCCTCTAAGTTTGCAACCAAGAATGGTAACTAGAAAAACAGATCGAATGGGGTTTGATTGAAGAGAAAAATAGAAATAAGCACATAAATGAAAACAATAAAAACTCTATGAGATAAACGGGGGAATTCAAATAGTATCAACTTTGAGCTTTAGATTGAGCCCACGTATGCGCTCGCAACTTACTCAGACACTACAAACGGCTGGAGAGTACTATCTATGTTGCCCACATAGACATGGTGCATATAGCATCCTACAGTTGCGCCCGCAATTACCCTGACAATTAG

mRNA sequence

ATGACCAGTTCGTCTAGAGCTCCTAGACACACGTGGACGAAGAATGAGGACACGAAGCTTGTGGAGTTCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGGTTCGCACCCGAAAGAAACAATATCAAGCAATCGCAGAGATGATGGGTCTTGGATGCAGTGGCTTTGGCTGGAACGATGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTTGACCTGTGGGTGAAGACTCATCTTATCGCAAAGGGCTTGCTAAACAAGCCTTTCCCGCATTTCGAGGACTTGGCATATGTTTTTGGGAAGGATCGAGCCACAGGAGGGGTGTCGGAGGTGATGGCAAAGATGGGTTCCATCGTGCCAGATGATGCAGTAAACCTCAGTGGATCCCCAGACAACGACATCCCCATCCCGCCGTTCACCATGCCTACTGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCAGACAGTCAAACTTACCCAATCGGAAATTCGTCACGTGGGAGTAAGAGGAAGAGATCTGGACACTACAAACGGCTGGAGAGTACTATCTATGTTGCCCACATAGACATGGTGCATATAGCATCCTACAGTTGCGCCCGCAATTACCCTGACAATTAG

Coding sequence (CDS)

ATGACCAGTTCGTCTAGAGCTCCTAGACACACGTGGACGAAGAATGAGGACACGAAGCTTGTGGAGTTCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGGTTCGCACCCGAAAGAAACAATATCAAGCAATCGCAGAGATGATGGGTCTTGGATGCAGTGGCTTTGGCTGGAACGATGAATTTAAGTGCATCGAGGCAGAGAAAGAAACATTTGACCTGTGGGTGAAGACTCATCTTATCGCAAAGGGCTTGCTAAACAAGCCTTTCCCGCATTTCGAGGACTTGGCATATGTTTTTGGGAAGGATCGAGCCACAGGAGGGGTGTCGGAGGTGATGGCAAAGATGGGTTCCATCGTGCCAGATGATGCAGTAAACCTCAGTGGATCCCCAGACAACGACATCCCCATCCCGCCGTTCACCATGCCTACTGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCAGACAGTCAAACTTACCCAATCGGAAATTCGTCACGTGGGAGTAAGAGGAAGAGATCTGGACACTACAAACGGCTGGAGAGTACTATCTATGTTGCCCACATAGACATGGTGCATATAGCATCCTACAGTTGCGCCCGCAATTACCCTGACAATTAG

Protein sequence

MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGWRVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGLLNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPDSQTYPIGNSSRGSKRKRSGHYKRLESTIYVAHIDMVHIASYSCARNYPDN
Homology
[Close]
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.7e-40
Identity = 99/214 (46.26%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           M SSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI  EKE FD WVK+H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 100/214 (46.73%), Postives = 119/214 (55.61%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DAV     PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match: A0A5A7U6Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00120 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.2e-39
Identity = 99/214 (46.26%), Postives = 119/214 (55.61%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG++E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match: A0A5A7UQ11 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001230 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.2e-39
Identity = 86/179 (48.04%), Postives = 115/179 (64.25%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGWR-----VRTRKKQYQAIAEMMGLGCSG 60
           M++S+RAPRH WTK E+  LVE L+ LV +GGW+     ++T K+ +QAIAEM G  CSG
Sbjct: 1   MSTSNRAPRHVWTKEEERTLVECLMKLVSMGGWKSDNGTIKTLKRTFQAIAEMRGPACSG 60

Query: 61  FGWNDEFKCIEAEKETFDLWVKTHLIAKGLLNKPFPHFEDLAYVFGKDRATGGVSEVMAK 120
           FGWNDE KCI AEKE FD WV++H  AK LLNKPFP++++L YVFG+DR TG  +E  A 
Sbjct: 61  FGWNDEEKCIIAEKELFDNWVRSHPAAKRLLNKPFPYYDELTYVFGRDRVTGRFAETFAD 120

Query: 121 MGSIVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPDSQTYPIGNSSRGSKRKR 175
           +GS  P    +     D +   P      +++S+D+ R +  S+       S GSKRKR
Sbjct: 121 VGSNEPSGGYDRFDMGDGNEDFPLVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKR 179

[Close]
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 99/214 (46.26%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 5.6e-40
Identity = 99/214 (46.26%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           M SSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI  EKE FD WVK+H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-39
Identity = 100/214 (46.73%), Postives = 119/214 (55.61%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DAV     PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. NCBI nr
Match: KAA0051058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-38
Identity = 99/214 (46.26%), Postives = 119/214 (55.61%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG++E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGLAESFADIGSNDPPGYDAGAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. NCBI nr
Match: KAA0055631.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-38
Identity = 86/179 (48.04%), Postives = 115/179 (64.25%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGWR-----VRTRKKQYQAIAEMMGLGCSG 60
           M++S+RAPRH WTK E+  LVE L+ LV +GGW+     ++T K+ +QAIAEM G  CSG
Sbjct: 1   MSTSNRAPRHVWTKEEERTLVECLMKLVSMGGWKSDNGTIKTLKRTFQAIAEMRGPACSG 60

Query: 61  FGWNDEFKCIEAEKETFDLWVKTHLIAKGLLNKPFPHFEDLAYVFGKDRATGGVSEVMAK 120
           FGWNDE KCI AEKE FD WV++H  AK LLNKPFP++++L YVFG+DR TG  +E  A 
Sbjct: 61  FGWNDEEKCIIAEKELFDNWVRSHPAAKRLLNKPFPYYDELTYVFGRDRVTGRFAETFAD 120

Query: 121 MGSIVPDDAVNLSGSPDNDIPIPPFTMPTVNMSEDEPRVTPDSQTYPIGNSSRGSKRKR 175
           +GS  P    +     D +   P      +++S+D+ R +  S+       S GSKRKR
Sbjct: 121 VGSNEPSGGYDRFDMGDGNEDFPLVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKR 179

[Close]
BLAST of Lcy06g011750 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-38
Identity = 99/214 (46.26%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 1   MTSSSRAPRHTWTKNEDTKLVEFLVSLVHVGGW--------------------------- 60
           MTSSSR P+HTWTK E+  LVE LV LV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  --------RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGL 120
                   R++  K+ + A+AEM G  CSGFGWNDE KCI AEKE FD W  +H  AKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 121 LNKPFPHFEDLAYVFGKDRATGGVSEVMAKMGSIVPD--DAVNLSGSPDNDIPIPPFTMP 178
           LNK F H+++L+YVFGKDRATGG +E  A +GS  P   DA      PD D   PP   P
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTD--FPPMYSP 180

[Close]
BLAST of Lcy06g011750 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 27/81 (33.33%), Postives = 41/81 (50.62%), Query Frame = 0 

Query: 34  RVRTRKKQYQAIAEMMGLGCSGFGWNDEFKCIEAEKETFDLWVKTHLIAKGLLNKPFPHF 93
           R++  K  YQ+  ++     SGFGW+ E K   A  E +  ++K H   K +  +   HF
Sbjct: 69  RLKFLKNLYQSYLDLKRFS-SGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHF 128

Query: 94  EDLAYVFGKDRATGGVSEVMA 115
           EDL  +FG   ATG  +  M+
Sbjct: 129 EDLQIIFGDVVATGSFAVGMS 148

The following BLAST results are available for this feature:
BLAST of Lcy06g011750 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g011750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C1M02.7e-4046.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DPR52.3e-3946.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U6Z35.2e-3946.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UQ115.2e-3948.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UME41.1e-3846.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Lcy06g011750 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05082.15.6e-4046.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035621.14.8e-3946.73retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... [more]
KAA0051058.11.1e-3846.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0055631.11.1e-3848.04retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0057083.12.4e-3846.26retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p... [more]
BLAST of Lcy06g011750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30140.12.6e-0633.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..176
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 34..179

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy06g011750.1Lcy06g011750.1mRNA